TCONS_00042836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042836
Unique NameTCONS_00042836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042836 ID=TCONS_00042836|Name=TCONS_00042836|organism=Clytia hemisphaerica|type=transcript|length=426bp
AATGTTGACTGGTTCAACCCCTACAAACACGTTAAGTACAGTATAGGAGC
TATATATCTCGTGATAATGAATTTGCCAAGAAGTGANAAGAAAGGAAATT
ATGGGCTCATGCTGAATGTTGTCTGGTTCAACCCCTACAAACACGTTAAG
TACAGTATAGGAGCTATATATCTCGTGATAATGAATTTGCCAAGAAGTGA
ACGTTTTAAACCAAAAAACATTATTCTAGTCGACCTCATCCCATCGATGG
CAAAAGAACCAGCTAATATAAATTCGTTTTTGGAGCCTTCTGGTTTGTGA
ATTAAAGGAGGCTTGGACTGATGGTTTCATCCTAAAACTTGGCaatgctt
ttaaaacgtttggATTGGCACTTTTATGTATTGGATGTGATATTCCTGCA
TGTCGCAAGCTTTGTGGATTTTTAGG
Run BLAST on NCBI

protein sequence of TCONS_00042836-protein

>TCONS_00042836-protein ID=TCONS_00042836-protein|Name=TCONS_00042836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
NVDWFNPYKHVKYSIGAIYLVIMNLPRSXKKGNYGLMLNVVWFNPYKHVK
YSIGAIYLVIMNLPRSERFKPKNIILVDLIPSMAKEPANINSFLEPSGL
Run BLAST on NCBI

transcript from alignment at sc0003719:5242..5667

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042836 ID=TCONS_00042836|Name=TCONS_00042836|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at sc0003719:5242..5667 (Clytia hemisphaerica)
CCTAAAAATCCACAAAGCTTGCGACATGCAGGAATATCACATCCAATACA
TAAAAGTGCCAATccaaacgttttaaaagcattGCCAAGTTTTAGGATGA
AACCATCAGTCCAAGCCTCCTTTAATTCACAAACCAGAAGGCTCCAAAAA
CGAATTTATATTAGCTGGTTCTTTTGCCATCGATGGGATGAGGTCGACTA
GAATAATGTTTTTTGGTTTAAAACGTTCACTTCTTGGCAAATTCATTATC
ACGAGATATATAGCTCCTATACTGTACTTAACGTGTTTGTAGGGGTTGAA
CCAGACAACATTCAGCATGAGCCCATAATTTCCTTTCTTNTCACTTCTTG
GCAAATTCATTATCACGAGATATATAGCTCCTATACTGTACTTAACGTGT
TTGTAGGGGTTGAACCAGTCAACATT

Coding sequence (CDS) from alignment at sc0003719:5242..5667

>TCONS_00042836 ID=TCONS_00042836|Name=TCONS_00042836|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0003719:5242..5667 (Clytia hemisphaerica)
TCACAAACCAGAAGGCTCCAAAAACGAATTTATATTAGCTGGTTCTTTTG
CCATCGATGGGATGAGGTCGACTAGAATAATGTTTTTTGGTTTAAAACGT
TCACTTCTTGGCAAATTCATTATCACGAGATATATAGCTCCTATACTGTA
CTTAACGTGTTTGTAGGGGTTGAACCAGACAACATTCAGCATGAGCCCAT
AATTTCCTTTCTTNTCACTTCTTGGCAAATTCATTATCACGAGATATATA
GCTCCTATACTGTACTTAACGTGTTTGTAGGGGTTGAACCAGTCAACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026628XLOC_026628Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042836-exon-sc0003719-1491911889:5242..5667TCONS_00042836-exon-sc0003719-1491911889:5242..5667Clytia hemisphaericaexon
TCONS_00042836-exon-sc0003719-1510915933:5242..5667TCONS_00042836-exon-sc0003719-1510915933:5242..5667Clytia hemisphaericaexon
TCONS_00042836-exon-sc0003719-1575043694:5242..5667TCONS_00042836-exon-sc0003719-1575043694:5242..5667Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042836-proteinTCONS_00042836-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003719supercontigsc0003719:5242..5667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0920319	0	0	0.181105	2.08215	0.522674	0	0.430193	0.265697	0	0.674052	0	0.322301	0	0	0.0996274	0	0	0.198549	0.806895	0.589524	0.28928	0.240977	0	2.04745	1.13952	0.640824	0.695204	0	0.29795
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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