TCONS_00042833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042833
Unique NameTCONS_00042833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042833 ID=TCONS_00042833|Name=TCONS_00042833|organism=Clytia hemisphaerica|type=transcript|length=580bp
TGAAACTGTAGCAAAGAGAAAGAACAGAGGAAAGAAGATgggaattttta
ttgtttcattgaCAAGACAGACTCAACAGAGTCATTTCTAGAAAaggaaa
gctgaaaaatgaccTGCATACGTggtgaaaaaaccttttttgcaaAGCAG
CGAATATAACTATAAGAAAGTGAGCAAGAACATGATGAACTTGGCCTTTT
TGCATGCTTTGAAATGAGTCGAACATATTCAAGTTATGGATAATCTTGAA
GAATTTATCCCTCCTCTTATTCAGTGGAAAAGAGAACTGATTGTTTGTCG
TTGTTCTTGAAATCTTGACTTGGCTGCTCGAAAATATGTGGGTTCTGGTT
GCTTGCTGTTATAAATATGCATTTGAATTTGATGGCCAGGATAAAGTAAC
TATTGAGGAAACATATGATTGTAAAAAGGATTTTAGAAATTGCTGGAAAC
GAAAATGACTTGTAAAATATCGAAATGTGTCCATGAACAAATCTTGACAG
TTATCATCAAAACATGATATTATGGATATTTATGATGtacttttaactgt
tttaaatttctgtgcTACAGCTGATAAANN
Run BLAST on NCBI

transcript from alignment at sc0003714:7931..8510

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042833 ID=TCONS_00042833|Name=TCONS_00042833|organism=Clytia hemisphaerica|type=transcript|length=580bp|location=Sequence derived from alignment at sc0003714:7931..8510 (Clytia hemisphaerica)
NNTTTATCAGCTGTAgcacagaaatttaaaacagttaaaagtaCATCATA
AATATCCATAATATCATGTTTTGATGATAACTGTCAAGATTTGTTCATGG
ACACATTTCGATATTTTACAAGTCATTTTCGTTTCCAGCAATTTCTAAAA
TCCTTTTTACAATCATATGTTTCCTCAATAGTTACTTTATCCTGGCCATC
AAATTCAAATGCATATTTATAACAGCAAGCAACCAGAACCCACATATTTT
CGAGCAGCCAAGTCAAGATTTCAAGAACAACGACAAACAATCAGTTCTCT
TTTCCACTGAATAAGAGGAGGGATAAATTCTTCAAGATTATCCATAACTT
GAATATGTTCGACTCATTTCAAAGCATGCAAAAAGGCCAAGTTCATCATG
TTCTTGCTCACTTTCTTATAGTTATATTCGCTGCTttgcaaaaaaggttt
tttcaccACGTATGCAggtcatttttcagctttcctTTTCTAGAAATGAC
TCTGTTGAGTCTGTCTTGtcaatgaaacaataaaaattcccATCTTCTTT
CCTCTGTTCTTTCTCTTTGCTACAGTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026625XLOC_026625Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042833-exon-sc0003714-1491911889:7931..8510TCONS_00042833-exon-sc0003714-1491911889:7931..8510Clytia hemisphaericaexon
TCONS_00042833-exon-sc0003714-1510915933:7931..8510TCONS_00042833-exon-sc0003714-1510915933:7931..8510Clytia hemisphaericaexon
TCONS_00042833-exon-sc0003714-1575043694:7931..8510TCONS_00042833-exon-sc0003714-1575043694:7931..8510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003714supercontigsc0003714:7931..8510 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.847773	0	0.762634	0.639103	0.206378	0.152558	0	0.126322	0.328428	0.363728	0	0	0.105991	0	0.248147	0.106261	0.408355	0.280288	0.156932	0.198961	0.21618	0.99794	0.564843	0.386638	0.69245	0.546464	1.0111	0	1.5857	0.48914
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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