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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042832 ID=TCONS_00042832|Name=TCONS_00042832|organism=Clytia hemisphaerica|type=transcript|length=769bp
CGAAGTTCTCTGGTTAGGTTAGAAAAATTCTCCTTAATATTTTTGCGTCT
GTTTATTTACCTCCCTTATATGACGGGTATGGTTTCGAATGAGCGAAGCG
AAATTCTCTTGTCCCGCTCAGTTCTTTTTGATCTGACTTCTGGACTGAAA
AAGACCGAAAAGTTTCTTCCACATATCCTATCCTAATTGATCTGACTTCT
GGACATCAAAGATATTTACTTTACAAAGTCTCACAATCTTGCTGGACATA
AAAGATATTTACATTAAAAAGTCTCCGGACTTTACCATCACATCTGACAT
CAAAGATATTAAAATCAGactGTATAATCCATTGATAAAGAGATTGGCTG
AAGAAATTCAAGTTTATTGGATATTGGCTGAAGCATTTCTACTCGATTGT
ACCACCATATTCTAGgGATTGTTTCTGAAATCACCATTGGTTCAAGTACA
TACAATCGATTTGCACAGCACAAGTTTACTAACTTGCACAGCACAAGTTT
ACTAACTTGCATTACGAGTTTACTAACTTGCATTACGAGTTTACTAACTT
GCATTACGAGTTTACTAATTGCATTACGAGTTTACTAATTGCATTACGAG
TTTACTAATTGCATTACGAGTTTACTAATGGCATTACGCGTTAACTGATT
ACATTACGTGTTTTCAAAGTTTATAAGGATAAACTCAGATAAACCCTAGC
TTTTTACTTAGAAATATTtcaacaataacaacaacagTGCCCAGAGTGTT
AAAGAAAATATATTAAAGT Run BLAST on NCBI transcript from alignment at sc0003714:3453..6211- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042832 ID=TCONS_00042832|Name=TCONS_00042832|organism=Clytia hemisphaerica|type=transcript|length=2759bp|location=Sequence derived from alignment at sc0003714:3453..6211- (Clytia hemisphaerica)
CGAAGTTCTCTGGTTAGGTTAGAAAAATTCTCCTTAATATTTTTGCGTCT
GTTTATTTACCTCCCTTATATGACGGGTATGGTTTCGAATGAGCGAAGCG
AAATTCTCTTGTCCCGCTCAGTTCTTTTTGATCTGACTTCTGGACTGAAA
AAGACCGAAAAGTTTCTTCCACATATCCTATCCTAATTGATCTGACTTCT
GGACATCAAAGATATTTACTTTACAAAGTCTCACAATCTTGCTGGACATA
AAAGATATTTACATTAAAAAGTCTCCGGACTTTACCATCACATCTGACAT
CAAAGATATTAAAATCAGGTAATTTTTGTCATCATTATTTAGACCATGTG
TTTGCATCATTTCCAGCCCCAAAGCAAAATGTGATCCTCCATATGATTTT
TAATACATAGAAATCTTTCCGGCAAGCATCAAAAAATGATTCGCTACATT
ATTGCACGCAGGCAGCACTTGAGTATTATTGTCCGCTTATTTACGGATTT
CTTCCCGCAAGATAACGGTTGATAAAATCTAGCGCATATTTTTTTTTGTT
GTGCTTAGCGGGAAGTTTGTCGGCAATCAGTCTGCCAGGTTTTTACGGCA
CGGAAGGGTGTACAAAGTCAGCAAATTGCTTCATGGAAATTTGTCGGCTA
TGAGCAGTGGTCAAAATAAGCTTTTTTCTCCTGGTCGGTTGTTTAGTGGA
TCACTCGCGTTGAAGTGTCACCCGAAGGGCGAATCATGGTTCGCCCTGAG
GACCAAATAATTTTTTTCACCGAATTTTTTGCCGAATTTGTCAAAATTGG
TTCTCTTGAAAGAGCAAAAAGATAAAGTAAGAGAATCAAAATGTTAATTT
TTGAAAAATATGTTGAAATCTAAGTTTACTACATTATTTTCAAGAATTAT
ACCTCGAAAATATTTAAAGTAGTTTGCTCAAATGCAAGAATAGAGGAAAT
TCTGGATAGAAATAAATATGGAAACTCAAGGTAACCGAATCACCATTAAG
CGAACAGTATATTGGTCGGTTATTTTCTCAAAATCCAAAATTTTTGGGTC
GGTGATTTTTTATTTCTGGTCGGGTCGGTTTTAACCGATAACCGACCACT
ATTTCGATCACTGTATGAGTCCGCAATGCTTTTTTGGAAGCGGTTTGTTT
GTATAATTTACGGTGCGTGATCCAACGATTCACAATGCACGATCCGCGAT
CGATGCATAATTTCATTGGGTTGGTTTATTCGGGGAAACTTTTTTTTTAA
GAAAAAGCAAAACTGACAAGATATTCAAAGCCCGTGCGAAAATGTTTGTT
TTGATTTCTAAATGATTGTTGAGGCTAGAATTAATACACCGGCAAACTCC
GTAAATTTGGCACTTGATTGCCGGCAAAATCGACACTGGATAATTGCTGG
CTTGAATTTAGTGTCTTTGTTTTGACATCGCTTGGAGGGTCACAAATATA
ATATGAATATGTTGCGGGTGGTCGGTCGGTCAGCACTGAAAAACATTAAA
AAAATTTGCTCTGAACATGGGTTTCTCCAGGACAACAAGAATCATTGAGT
GCACAATCTGCAGTACGATTCAAATTGTGCGGTCAGTCGGCGGTCGGCAC
TGAAAAACGCCAGAAAAATGGGCTCTGTACGAGTACAATTCAAATTGTTA
GATTTAATAAAATTTTTCTTTGTTTTCTTTTTCAGACTGTATAATCCATT
GATAAAGAGATTGGCTGAAGAAATTCAAGTTTATTGGATATTGGCTGAAG
CATTTCTACTCGATTGTACCACCATATTCTAGGTAATATTTAACAGGCCA
TTTTTTAAAGAGGGCTGGGACATGTTGAATGTTTAAGTAGTCCAGGCATA
AATTAAGTAGTCCAGGAATAAATTACGTAATTTACCTAAAAGCAGATGAT
CAGCCGCGCACTGAGTTTTTATCTGTACAGCTGTTACCTATAGTATTTGC
GCGGCAAGCTAGAATGTACCTAATGATTGCATGTGTACTTTCTAGCTTGC
CACACTTGTATGTGTACTTTCTAGCTTGCCGCACTTGCATGTGTACTTTC
TGGTACTTTCTAGCTTGTCGCACAGACAACAGCCACAGCTGTGCAGATAA
AAACTGAAAAAAGCTGATCATCTGAGTCCTACGTCATAAATAATGGTGTC
GACTTTGAAAAATGCTCTATTGGACCGATTGAGATGTTGCATTAGGCAGG
CATCAAAAAATTGTTCTATTCGAGTCACCCGCCCGCATCATATTTTCCGC
TGATTTTCCGGTGCGGAGACGCAGGAAAAAATCCAAGAAAAGCAATTTGT
TCTTTTAAGGTCAGAAGTTAAATTTTGAAAGATAATTTCAGTCAATTAAG
TTCTGTGAAATGCATTTGCAATTTGACTTATTTCTTTACAATTTTCCTTT
TTCAGGGATTGTTTCTGAAATCACCATTGGTTCAAGTACATACAATCGAT
TTGCACAGCACAAGTTTACTAACTTGCACAGCACAAGTTTACTAACTTGC
ATTACGAGTTTACTAACTTGCATTACGAGTTTACTAACTTGCATTACGAG
TTTACTAATTGCATTACGAGTTTACTAATTGCATTACGAGTTTACTAATT
GCATTACGAGTTTACTAATGGCATTACGCGTTAACTGATTACATTACGTG
TTTTCAAAGTTTATAAGGATAAACTCAGATAAACCCTAGCTTTTTACTTA
GAAATATTTCAACAATAACAACAACAGTGCCCAGAGTGTTAAAGAAAATA
TATTAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042832-exon-sc0003714-1575043694:5894..6211 | TCONS_00042832-exon-sc0003714-1575043694:5894..6211 | Clytia hemisphaerica | exon |
| TCONS_00042832-exon-sc0003714-1575043694:4430..4526 | TCONS_00042832-exon-sc0003714-1575043694:4430..4526 | Clytia hemisphaerica | exon |
| TCONS_00042832-exon-sc0003714-1575043694:3453..3806 | TCONS_00042832-exon-sc0003714-1575043694:3453..3806 | Clytia hemisphaerica | exon |
| TCONS_00042832-exon-sc0003714-1510915933:5894..6211 | TCONS_00042832-exon-sc0003714-1510915933:5894..6211 | Clytia hemisphaerica | exon |
| TCONS_00042832-exon-sc0003714-1510915933:4430..4526 | TCONS_00042832-exon-sc0003714-1510915933:4430..4526 | Clytia hemisphaerica | exon |
| TCONS_00042832-exon-sc0003714-1510915933:3453..3806 | TCONS_00042832-exon-sc0003714-1510915933:3453..3806 | Clytia hemisphaerica | exon |
| TCONS_00042832-exon-sc0003714-1491911889:5894..6211 | TCONS_00042832-exon-sc0003714-1491911889:5894..6211 | Clytia hemisphaerica | exon |
| TCONS_00042832-exon-sc0003714-1491911889:4430..4526 | TCONS_00042832-exon-sc0003714-1491911889:4430..4526 | Clytia hemisphaerica | exon |
| TCONS_00042832-exon-sc0003714-1491911889:3453..3806 | TCONS_00042832-exon-sc0003714-1491911889:3453..3806 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003714 | supercontig | sc0003714:3453..6211 - |
Blast
The following BLAST results are available for this feature:
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