TCONS_00042829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042829
Unique NameTCONS_00042829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length846

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042829 ID=TCONS_00042829|Name=TCONS_00042829|organism=Clytia hemisphaerica|type=transcript|length=846bp
TTTGCacttaaaataatcaaaaataataCTTTACTTTGACCTTTTGGCGA
GGTTCGGGAACTTTCGGAAGCCTCAAATAGACTGGATTAAATATAGAAAC
AGTTTAGCTTTGCATTTGTACAATTtaggaaaaattttgattaattttaa
gGCCTAAAAACTTGGTTACGTCAAACTCCTGCCAGAATAACTTGTTTAAG
CTGCGATAGTGTCTGTCACCAGATGTGCCTCCAGAATGACTCTTCTTTGA
TATGGAGGAGAGCCAATAGCCTTTGGTACGTGTCTTAAGGCTCGAAGGGG
CCCTGAAGGATTTCTTTGTTCTTCGAAAACTTATCTTGTAACCAGTCCTA
CCGTTACCTCGGGAGCCTCTCTAGGTTGTCTGGACGGACAATCGGTCGAC
CCTACGAACCGGATCAACTACCTCCCAATACAACAATGCGAATCCAGTAA
AACCATGCTCATTTTTCGTTGGATTTCAAAGTGACGTGTTAAAGAAACAA
AATCAGTGttgtctttaaaaaatcaaaattccgtAAGGAAGGTAGCTATG
AACTTCAAATAAAGACTGGTTTtaatgaatttcaaaggaaCGAAAGCCTT
ATCTAGGTTACACTTAATTGgtattatttcttattttacaatcagaaatt
ttcaatgCAACCCTCATTTTGGCACATGAACATATTAAAAACAACTTGTC
atttcaaaatgtaaaatatagTCAGGCTGCCAATTAGCATAAATACTGAA
GCTGCCAGTAAGCCTTTGTCAATCTTGTTCTAAACTCCCTGCGTGACAAC
ATAGACTCCCAACAGTCCTAAACTTTGTGAAACACTCGTATGCAAG
Run BLAST on NCBI

transcript from alignment at sc0003710:5788..6633

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042829 ID=TCONS_00042829|Name=TCONS_00042829|organism=Clytia hemisphaerica|type=transcript|length=846bp|location=Sequence derived from alignment at sc0003710:5788..6633 (Clytia hemisphaerica)
CTTGCATACGAGTGTTTCACAAAGTTTAGGACTGTTGGGAGTCTATGTTG
TCACGCAGGGAGTTTAGAACAAGATTGACAAAGGCTTACTGGCAGCTTCA
GTATTTATGCTAATTGGCAGCCTGActatattttacattttgaaatGACA
AGTTGTTTTTAATATGTTCATGTGCCAAAATGAGGGTTGcattgaaaatt
tctgattgtaaaataagaaataatacCAATTAAGTGTAACCTAGATAAGG
CTTTCGttcctttgaaattcattaAAACCAGTCTTTATTTGAAGTTCATA
GCTACCTTCCTTacggaattttgattttttaaagacaaCACTGATTTTGT
TTCTTTAACACGTCACTTTGAAATCCAACGAAAAATGAGCATGGTTTTAC
TGGATTCGCATTGTTGTATTGGGAGGTAGTTGATCCGGTTCGTAGGGTCG
ACCGATTGTCCGTCCAGACAACCTAGAGAGGCTCCCGAGGTAACGGTAGG
ACTGGTTACAAGATAAGTTTTCGAAGAACAAAGAAATCCTTCAGGGCCCC
TTCGAGCCTTAAGACACGTACCAAAGGCTATTGGCTCTCCTCCATATCAA
AGAAGAGTCATTCTGGAGGCACATCTGGTGACAGACACTATCGCAGCTTA
AACAAGTTATTCTGGCAGGAGTTTGACGTAACCAAGTTTTTAGGCcttaa
aattaatcaaaatttttcctaAATTGTACAAATGCAAAGCTAAACTGTTT
CTATATTTAATCCAGTCTATTTGAGGCTTCCGAAAGTTCCCGAACCTCGC
CAAAAGGTCAAAGTAAAGtattatttttgattattttaagtGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026621XLOC_026621Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042829-exon-sc0003710-1491911889:5788..6633TCONS_00042829-exon-sc0003710-1491911889:5788..6633Clytia hemisphaericaexon
TCONS_00042829-exon-sc0003710-1510915933:5788..6633TCONS_00042829-exon-sc0003710-1510915933:5788..6633Clytia hemisphaericaexon
TCONS_00042829-exon-sc0003710-1575043694:5788..6633TCONS_00042829-exon-sc0003710-1575043694:5788..6633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003710supercontigsc0003710:5788..6633 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.27851	0.0716048	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0597973	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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