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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042828 ID=TCONS_00042828|Name=TCONS_00042828|organism=Clytia hemisphaerica|type=transcript|length=945bp AATGTTggtcaaacaaacaaacaaaatggcgcTAATTTTTCGGTGGTCGG ATGAGGAATTTGTTTGTGGAACAGATGGATTTTGTTTGATCATTCCATTG CTTTTTAGTGAAAGAAAATGGTTGCACTCCTGATTAAAGAACAACTACTT TCACAACAAATATAACTCCAACGGCACGTCCTCGACCTGCCCCCTGCTAA GCATGGACAATGTACCAACTACACAAACACACTGCGgtgaagatgaaaat gaaattgattcGAATGATGAAGACGAACCAGtttcttctggCAATTATGA CCCCGCCGTTCAAGTGTCTCGTATGCATTACGACTTGCTTTTTGAGAAAG AAATTGATTTGGAGGCTTTCAAGGTTgtagaagaaaaattgaaacgcGCA TCCGTCAAGGATTTTGAAAAGCACTGGTACGACATCAAAAAGCTTCTTTG CAAAATCCAATCTGGTGCTGTACCAAGCTACCGCCATGATGTTGTGAAGA GTTTGAAGAACCATTATTTTCGCGACAATCCGaaagtcaaaataagaaaa atagatcTTCAATATAGTCGAACGTATTCCTTGACAGATGATGTTGACAA TCTTATGTATCAGACGGTCATGGAGACTTTCCCTTCCTCCAATAGTAATG CTTTGAAATATGTCAGCGATGTCCTATTACCGGCAGCGTATAAATTTTTT GTTGTATACCACTGCGGGCTTGCGCCAGATGAAGTACAATACTTCAACGA GAACTATGACGACATGAGGAAGAAACTTGATTTCAAGGATGTAGAGGATG AATATCAAGCTGAATTGGACGTTGAAAGTTAGAATATTTATGTCTATTAC TTCATCAAAAGCCATCGAAAATGAATTATATTTGTGTTTGTGTTTATTAC TTCATTTAAAGCCATTTGAGATGATatatttcttttaaatgttCA Run BLAST on NCBI protein sequence of TCONS_00042828-protein >TCONS_00042828-protein ID=TCONS_00042828-protein|Name=TCONS_00042828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MDNVPTTQTHCGEDENEIDSNDEDEPVSSGNYDPAVQVSRMHYDLLFEKE IDLEAFKVVEEKLKRASVKDFEKHWYDIKKLLCKIQSGAVPSYRHDVVKS LKNHYFRDNPKVKIRKIDLQYSRTYSLTDDVDNLMYQTVMETFPSSNSNA LKYVSDVLLPAAYKFFVVYHCGLAPDEVQYFNENYDDMRKKLDFKDVEDE YQAELDVES Run BLAST on NCBI transcript from alignment at sc0003710:3..4092- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042828 ID=TCONS_00042828|Name=TCONS_00042828|organism=Clytia hemisphaerica|type=transcript|length=4090bp|location=Sequence derived from alignment at sc0003710:3..4092- (Clytia hemisphaerica) AATGTTGGTCAAACAAACAAACAAAATGGCGCTAATTTTTCGGTGGTCGG
ATGAGGAATTTGTTTGTGGAACAGATGGATTTTGTTTGATCATTCCATTG
CTTTTTAGTGAAAGAAAATGGTTGCACTCCTGATTAAAGGTTAAAGTAAA
GTATTAGAGATAATGAGTTGTAAAAAATAAGTGTTTCACAGCTAACAATG
AAGAAAACTTTTAGTTCATTGTCTCGTAACAAATGTTACAGTCCAGTCTG
GAAATGATGCAAAGCTTACGCTGAATCATCAAGTGCTTTTAGCTGTCAAT
ACAATAGAAAGTACTCAACTCACCCTGAATATATTTGGCATAATGTGCAC
CATTTCTGGACTAGATTACAGTATACTGCATACCAGGTGTACTTAATGGA
TATAATAGATAGGCCCAGGCGTAGTTAATCGATATAATCGATAATCGAGG
GTAATCCATAACTAATCGATAAGTAATTAGATATTGATTATCTGATAGAA
TTGATAAGTAATCGATACTCAAGATTTTTTAAAGCTCAATTATTAATCGA
TTATTTATCGATTAGAGAGCTGTACATTAGGATTTGATTCAATCCAGATA
AATAAACAAATGATAAACAAATTCAATTTTTTATAACTTTCACAGGAAAA
ATTGGGTTTTCGCATGCCCGGGAATCAAAACCGCTTGCACGTACCACTTC
AAATTTTTACAGCTTTGAGATATCATGATTTATAACTTAATTACAAAAAT
TGAGATCAAAATTCAATTTACATCAAGAGTTATAAACAAATTCAATTTTT
TATAACTTTTGCAGGAAAAATTGGGTTTTCGCAAGCCCGGGAATCAAAAC
GGCTTGCACGTTCTACTTCAATTTTTTACAGCTTTGAGATATCATGATTT
ATAACTTAATTACAAAAATTGAGATCAAAATTCGATTTACATCAAAAGTT
ATAAACAAATTCAATTTTTTTTAACTTTCGCAGGAAAAATTGGGTTTTCG
CAAGCCCGGGAATCAAAACCGCTTGCACGTACCACTTCAAATTTTTACAG
CTTTGAGATATCATGATTTATAACTTAATTACAAAAATTGAGATCAAAAT
TCGATTTACATCAAGAGTTATAAACAAATTCAATTTTTTATAACTTTCAC
AGGAAAAATTGGGTTTTCGCAAGCCCGGGAATCAAAACGGCTTGCACGTT
CTACTTCAAATTTTTACAGCTTTGAGATATCATGATTTATAACTTAATTA
CAAGAATTGAGATCAAAATTCGATTTACATCAAAAGTTATAAACAAATTC
AATTTTTTATAACTTTCGCAGGAAAAATTGGGTTTTCGCAAGCCCGGGAA
TCAAAACCGCTTGCACGTACCACTTCAAATTTTTACAGCTTTGAGATATC
ATGATTTATAACTTAATTACAAAAATTGAGATCAAAATTCGATTTACATC
AAAAGTTATAAACAAATTCAATTTTTTATAACTTTCGCAGGAAAAATTGG
GTTTTCGCAAGCCCGGGAATCAAAACCGCTTGCACGTACCACTTCAAATT
TTTACAGCTTTGAGATATCATGATTTATAACTTAATTACAAAAATTGAGA
TCAAAATTCGATTTACATCAAGAGTTATAAACAAATTCAATTTTTTATAA
CTTTCACAGGAAAAATTGGGTTTTCGCAAGCCCGGGAATCAAAACGGCTT
GCACGTTCTACTTCAATTTTTTACAGCTTTGAGATATCATGATTTATAAC
TTAATTACAAGAATTGAGATCAAAATTCGATTTACATCAAGAGTTATAAA
CAAATTCAATTTTTTATAACTTTCGCAGGAAAAATTGGGTTTTCGCAAGC
CCGGGAATCAAAACGGCTTGCCCGTTCTACTTCAAATTTTTACAGCTTTA
ATCAAATCCTAAAGCTCAATTCAAAACTTTAAAAGCAGTAAGAATTGTGA
ATTTTATGGAGAATTTAGATTAGAGTTTGTATAGTAGCTGGAATATATTG
AGTTCAACGGTCATGAATTCTTTAATATTTGAAAAATTTATTTTTGCATG
ACAGAATTCAAATAAAGAAGATTCTTTTGTTGCAAATAGTTTTAAAAGGG
TCGTTTTTCACGGCAAAATGACAACTTGAGAGTATTTAAAATGACACAAT
CTTTTAAATATGTTCATATGACAAAATAAGGGTTGTTTTGCAAATTTCTA
AATTTAAAACATGCAAAATAACAGTTAAGTGTAACCTATAAGGGGCTTCT
ACTCATTTCCAATTCTTTAAAGTCAGTCTTTATTTGAAGTTCATACTTCA
AGGTTTTTAAAGGTCAACCTTAATTTTGTTTCTTCTGAGCTCTAATATTA
TTTGTATTTTCAGAACAACTACTTTCACAACAAATATAACTCCAACGGCA
CGTCCTCGACCTGCCCCCTGCTAAGCATGGACAATGTACCAACTACACAA
ACACACTGCGGTAGTTATTGTTGGTTCTTCATCAATCGGAAATTTGTTTC
AAAGATATAATTGGGAAAAACTTTTTATATGGTTGTTGGTTTAAAACGAA
CCCAAGCATAGACAATCTATTTCAATCAAAAACCAAGACTTTTTTCTAAT
TATATCATATTTTTCAGAAAATGTTATATACCTAGGTAAATTTGCAAGCA
TAGTTTTAATCAGGGCTTCCTTTTGTTTCTCATAGAAGGTGAAGATGAAA
ATGAAATTGATTCGAATGATGAAGACGAACCAGGTATGGTTACTTAAAAC
GAGCGCAAGTAATTCTTGTTGTTCCTTCGCCAGCCCTAAGTTTGTTTTCT
AGATATCTCAAAAATCGGTAATTTTGCTATTAATTCTTATGGACAATACC
CAGTAGATCTCCTTTGTAGTGATTTATTTTTCTTTTTTTAATTTTTCAGT
TTCTTCTGGCAATTATGACCCCGCCGTTCAAGTGTCTCGTATGCATTACG
ACTTGCTTTTTGGTAAGAGTGCTAGAAATAGACAAGGAATTTATTTTGGA
AGGTGGAACTATATGAATTGGGCTATTTCGTGATGTTTCTATAAGTTAGA
ATCCTGAATATTCTTTTTTTTCAATCATGATGTTTTACATTTCTGGCTAG
ATTTTATATCTTTCATGTAACTGCTCCTTATTCAATTTACTTCATTGTAG
AGAAAGAAATTGATTTGGAGGCTTTCAAGGTTGTAGAAGAAAAATTGAAA
CGCGCATCCGTCAAGGATTTTGAAAAGCACTGGTACGACATCAAAAAGCT
TCTTTGCAAAATCCAATCTGGTGCTGTACCAAGCTACCGCCATGATGTTG
TGAAGAGTTTGAAGAACCATTATTTTCGCGACAATCCGAAAGTCAAAATA
AGAAAAATAGATCTTCAATATAGTCGAACGTGTAAGATAATTTTTAAAAA
TTATGGTTTTCTTTTAATGTTTTCTTTTAATTGTGGGAATGAAAAAATCA
AAATTTTGTGTAAGTTACATGAATCAATAAGAGAACAAAACTCCCTAGCT
AAAAATATATTTTTCTTCCTCTTTATATTATAGATTCCTTGACAGATGAT
GTTGACAATCTTATGTATCAGACGGTCATGGAGACTTTCCCTTCCTCCAA
TAGTAATGCTTTGAAATATGTCAGCGATGTCCTATTACCGGCAGCGTATA
AATTTTTTGTTGTATACCACTGCGGGCTTGCGCCAGATGAAGTACAATAC
TTCAACGAGAACTATGGTAAGCTTGTCTACTGTGTCACTGCTTTTTACTA
TACCGAGCTGTTTAAAGTTACAGCATTGTAGCATGCTAGATGATGGAACC
TTTACAAACTCTTTTTTGCTTTTACTTGTCTTTTAATTACTTTGTAAGGA
TTCAAATAGCACGGGAAAAATAATCAATAAAATAAACCTTTTACTTTATC
TAGACGACATGAGGAAGAAACTTGATTTCAAGGATGTAGAGGATGAATAT
CAAGCTGAATTGGACGTTGAAAGTTAGAATATTTATGTCTATTACTTCAT
CAAAAGCCATCGAAAATGAATTATATTTGTGTTTGTGTTTATTACTTCAT
TTAAAGCCATTTGAGATGATATATTTCTTTTAAATGTTCA Coding sequence (CDS) from alignment at sc0003710:3..4092- >TCONS_00042828 ID=TCONS_00042828|Name=TCONS_00042828|organism=Clytia hemisphaerica|type=CDS|length=3780bp|location=Sequence derived from alignment at sc0003710:3..4092- (Clytia hemisphaerica) ACGACATGAGGAAGAAACTTGATTTCAAGGATGTAGAGGATGAATATCAA GCTGAATTGGACGTTGAAAGTTAGATTCCTTGACAGATGATGTTGACAAT CTTATGTATCAGACGGTCATGGAGACTTTCCCTTCCTCCAATAGTAATGC TTTGAAATATGTCAGCGATGTCCTATTACCGGCAGCGTATAAATTTTTTG TTGTATACCACTGCGGGCTTGCGCCAGATGAAGTACAATACTTCAACGAG AACTATGAGAAAGAAATTGATTTGGAGGCTTTCAAGGTTGTAGAAGAAAA ATTGAAACGCGCATCCGTCAAGGATTTTGAAAAGCACTGGTACGACATCA AAAAGCTTCTTTGCAAAATCCAATCTGGTGCTGTACCAAGCTACCGCCAT GATGTTGTGAAGAGTTTGAAGAACCATTATTTTCGCGACAATCCGAAAGT CAAAATAAGAAAAATAGATCTTCAATATAGTCGAACGTTTTCTTCTGGCA ATTATGACCCCGCCGTTCAAGTGTCTCGTATGCATTACGACTTGCTTTTT GGTGAAGATGAAAATGAAATTGATTCGAATGATGAAGACGAACCAGATGG ACAATGTACCAACTACACAAACACACTGCGACGACATGAGGAAGAAACTT GATTTCAAGGATGTAGAGGATGAATATCAAGCTGAATTGGACGTTGAAAG TTAGATTCCTTGACAGATGATGTTGACAATCTTATGTATCAGACGGTCAT GGAGACTTTCCCTTCCTCCAATAGTAATGCTTTGAAATATGTCAGCGATG TCCTATTACCGGCAGCGTATAAATTTTTTGTTGTATACCACTGCGGGCTT GCGCCAGATGAAGTACAATACTTCAACGAGAACTATGAGAAAGAAATTGA TTTGGAGGCTTTCAAGGTTGTAGAAGAAAAATTGAAACGCGCATCCGTCA AGGATTTTGAAAAGCACTGGTACGACATCAAAAAGCTTCTTTGCAAAATC CAATCTGGTGCTGTACCAAGCTACCGCCATGATGTTGTGAAGAGTTTGAA GAACCATTATTTTCGCGACAATCCGAAAGTCAAAATAAGAAAAATAGATC TTCAATATAGTCGAACGTTTTCTTCTGGCAATTATGACCCCGCCGTTCAA GTGTCTCGTATGCATTACGACTTGCTTTTTGGTGAAGATGAAAATGAAAT TGATTCGAATGATGAAGACGAACCAGATGGACAATGTACCAACTACACAA ACACACTGCGACGACATGAGGAAGAAACTTGATTTCAAGGATGTAGAGGA TGAATATCAAGCTGAATTGGACGTTGAAAGTTAGATTCCTTGACAGATGA TGTTGACAATCTTATGTATCAGACGGTCATGGAGACTTTCCCTTCCTCCA ATAGTAATGCTTTGAAATATGTCAGCGATGTCCTATTACCGGCAGCGTAT AAATTTTTTGTTGTATACCACTGCGGGCTTGCGCCAGATGAAGTACAATA CTTCAACGAGAACTATGAGAAAGAAATTGATTTGGAGGCTTTCAAGGTTG TAGAAGAAAAATTGAAACGCGCATCCGTCAAGGATTTTGAAAAGCACTGG TACGACATCAAAAAGCTTCTTTGCAAAATCCAATCTGGTGCTGTACCAAG CTACCGCCATGATGTTGTGAAGAGTTTGAAGAACCATTATTTTCGCGACA ATCCGAAAGTCAAAATAAGAAAAATAGATCTTCAATATAGTCGAACGTTT TCTTCTGGCAATTATGACCCCGCCGTTCAAGTGTCTCGTATGCATTACGA CTTGCTTTTTGGTGAAGATGAAAATGAAATTGATTCGAATGATGAAGACG AACCAGATGGACAATGTACCAACTACACAAACACACTGCGACGACATGAG GAAGAAACTTGATTTCAAGGATGTAGAGGATGAATATCAAGCTGAATTGG ACGTTGAAAGTTAGATTCCTTGACAGATGATGTTGACAATCTTATGTATC AGACGGTCATGGAGACTTTCCCTTCCTCCAATAGTAATGCTTTGAAATAT GTCAGCGATGTCCTATTACCGGCAGCGTATAAATTTTTTGTTGTATACCA CTGCGGGCTTGCGCCAGATGAAGTACAATACTTCAACGAGAACTATGAGA AAGAAATTGATTTGGAGGCTTTCAAGGTTGTAGAAGAAAAATTGAAACGC GCATCCGTCAAGGATTTTGAAAAGCACTGGTACGACATCAAAAAGCTTCT TTGCAAAATCCAATCTGGTGCTGTACCAAGCTACCGCCATGATGTTGTGA AGAGTTTGAAGAACCATTATTTTCGCGACAATCCGAAAGTCAAAATAAGA AAAATAGATCTTCAATATAGTCGAACGTTTTCTTCTGGCAATTATGACCC CGCCGTTCAAGTGTCTCGTATGCATTACGACTTGCTTTTTGGTGAAGATG AAAATGAAATTGATTCGAATGATGAAGACGAACCAGATGGACAATGTACC AACTACACAAACACACTGCGACGACATGAGGAAGAAACTTGATTTCAAGG ATGTAGAGGATGAATATCAAGCTGAATTGGACGTTGAAAGTTAGATTCCT TGACAGATGATGTTGACAATCTTATGTATCAGACGGTCATGGAGACTTTC CCTTCCTCCAATAGTAATGCTTTGAAATATGTCAGCGATGTCCTATTACC GGCAGCGTATAAATTTTTTGTTGTATACCACTGCGGGCTTGCGCCAGATG AAGTACAATACTTCAACGAGAACTATGAGAAAGAAATTGATTTGGAGGCT TTCAAGGTTGTAGAAGAAAAATTGAAACGCGCATCCGTCAAGGATTTTGA AAAGCACTGGTACGACATCAAAAAGCTTCTTTGCAAAATCCAATCTGGTG CTGTACCAAGCTACCGCCATGATGTTGTGAAGAGTTTGAAGAACCATTAT TTTCGCGACAATCCGAAAGTCAAAATAAGAAAAATAGATCTTCAATATAG TCGAACGTTTTCTTCTGGCAATTATGACCCCGCCGTTCAAGTGTCTCGTA TGCATTACGACTTGCTTTTTGGTGAAGATGAAAATGAAATTGATTCGAAT GATGAAGACGAACCAGATGGACAATGTACCAACTACACAAACACACTGCG ACGACATGAGGAAGAAACTTGATTTCAAGGATGTAGAGGATGAATATCAA GCTGAATTGGACGTTGAAAGTTAGATTCCTTGACAGATGATGTTGACAAT CTTATGTATCAGACGGTCATGGAGACTTTCCCTTCCTCCAATAGTAATGC TTTGAAATATGTCAGCGATGTCCTATTACCGGCAGCGTATAAATTTTTTG TTGTATACCACTGCGGGCTTGCGCCAGATGAAGTACAATACTTCAACGAG AACTATGAGAAAGAAATTGATTTGGAGGCTTTCAAGGTTGTAGAAGAAAA ATTGAAACGCGCATCCGTCAAGGATTTTGAAAAGCACTGGTACGACATCA AAAAGCTTCTTTGCAAAATCCAATCTGGTGCTGTACCAAGCTACCGCCAT GATGTTGTGAAGAGTTTGAAGAACCATTATTTTCGCGACAATCCGAAAGT CAAAATAAGAAAAATAGATCTTCAATATAGTCGAACGTTTTCTTCTGGCA ATTATGACCCCGCCGTTCAAGTGTCTCGTATGCATTACGACTTGCTTTTT GGTGAAGATGAAAATGAAATTGATTCGAATGATGAAGACGAACCAGATGG ACAATGTACCAACTACACAAACACACTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00042828-exon-sc0003710-1575043694:3954..4092 | TCONS_00042828-exon-sc0003710-1575043694:3954..4092 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1575043694:1633..1729 | TCONS_00042828-exon-sc0003710-1575043694:1633..1729 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1575043694:1360..1404 | TCONS_00042828-exon-sc0003710-1575043694:1360..1404 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1575043694:1131..1193 | TCONS_00042828-exon-sc0003710-1575043694:1131..1193 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1575043694:712..942 | TCONS_00042828-exon-sc0003710-1575043694:712..942 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1575043694:377..559 | TCONS_00042828-exon-sc0003710-1575043694:377..559 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1575043694:3..189 | TCONS_00042828-exon-sc0003710-1575043694:3..189 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1510915933:3954..4092 | TCONS_00042828-exon-sc0003710-1510915933:3954..4092 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1510915933:1633..1729 | TCONS_00042828-exon-sc0003710-1510915933:1633..1729 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1510915933:1360..1404 | TCONS_00042828-exon-sc0003710-1510915933:1360..1404 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1510915933:1131..1193 | TCONS_00042828-exon-sc0003710-1510915933:1131..1193 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1510915933:712..942 | TCONS_00042828-exon-sc0003710-1510915933:712..942 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1510915933:377..559 | TCONS_00042828-exon-sc0003710-1510915933:377..559 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1510915933:3..189 | TCONS_00042828-exon-sc0003710-1510915933:3..189 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1491911889:3954..4092 | TCONS_00042828-exon-sc0003710-1491911889:3954..4092 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1491911889:1633..1729 | TCONS_00042828-exon-sc0003710-1491911889:1633..1729 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1491911889:1360..1404 | TCONS_00042828-exon-sc0003710-1491911889:1360..1404 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1491911889:1131..1193 | TCONS_00042828-exon-sc0003710-1491911889:1131..1193 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1491911889:712..942 | TCONS_00042828-exon-sc0003710-1491911889:712..942 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1491911889:377..559 | TCONS_00042828-exon-sc0003710-1491911889:377..559 | Clytia hemisphaerica | exon |
| TCONS_00042828-exon-sc0003710-1491911889:3..189 | TCONS_00042828-exon-sc0003710-1491911889:3..189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0003710 | supercontig | sc0003710:3..4092 - |
Blast
The following BLAST results are available for this feature:
|