TCONS_00042827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042827
Unique NameTCONS_00042827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length937

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042827 ID=TCONS_00042827|Name=TCONS_00042827|organism=Clytia hemisphaerica|type=transcript|length=937bp
CTATAAGGGGCTTCTACTCATTTCCAATTCTTTAAAGTCAGTCTTTATTT
GAAGTTCATACTTCAAGGTTTTTAAAGGTCAACCTTAATTTTGTTTCTTC
TGAGCTCTAATATTATTTGTATTTTCAGAACAACTACTTTCACAACAAAT
ATAACTCCAACGGCACGTCCTCGACCTGCCCCCTGCTAAGCATGGACAAT
GTACCAACTACACAAACACACTGCGAaggtgaagatgaaaatgaaattga
ttcGAATGATGAAGACGAACCAGtttcttctggCAATTATGACCCCGCCG
TTCAAGTGTCTCGTATGCATTACGACTTGCTTTTTGAGAAAGAAATTGAT
TTGGAGGCTTTCAAGGTTgtagaagaaaaattgaaacgcGCATCCGTCAA
GGATTTTGAAAAGCACTGGTACGACATCAAAAAGCTTCTTTGCAAAATCC
AATCTGGTGCTGTACCAAGCTACCGCCATGATGTTGTGAAGAGTTTGAAG
AACCATTATTTTCGCGACAATCCGaaagtcaaaataagaaaaatagatcT
TCAATATAGTCGAACGTATTCCTTGACAGATGATGTTGACAATCTTATGT
ATCAGACGGTCATGGAGACTTTCCCTTCCTCCAATAGTAATGCTTTGAAA
TATGTCAGCGATGTCCTATTACCGGCAGCGTATAAATTTTTTGTTGTATA
CCACTGCGGGCTTGCGCCAGATGAAGTACAATACTTCAACGAGAACTATG
ACGACATGAGGAAGAAACTTGATTTCAAGGATGTAGAGGATGAATATCAA
GCTGAATTGGACGTTGAAAGTTAGAATATTTATGTCTATTACTTCATCAA
AAGCCATCGAAAATGAATTATATTTGTGTTTGTGTTTATTACTTCATTTA
AAGCCATTTGAGATGATatatttcttttaaatgttCA
Run BLAST on NCBI

transcript from alignment at sc0003710:3..1857-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042827 ID=TCONS_00042827|Name=TCONS_00042827|organism=Clytia hemisphaerica|type=transcript|length=1855bp|location=Sequence derived from alignment at sc0003710:3..1857- (Clytia hemisphaerica)
CTATAAGGGGCTTCTACTCATTTCCAATTCTTTAAAGTCAGTCTTTATTT
GAAGTTCATACTTCAAGGTTTTTAAAGGTCAACCTTAATTTTGTTTCTTC
TGAGCTCTAATATTATTTGTATTTTCAGAACAACTACTTTCACAACAAAT
ATAACTCCAACGGCACGTCCTCGACCTGCCCCCTGCTAAGCATGGACAAT
GTACCAACTACACAAACACACTGCGGTAGTTATTGTTGGTTCTTCATCAA
TCGGAAATTTGTTTCAAAGATATAATTGGGAAAAACTTTTTATATGGTTG
TTGGTTTAAAACGAACCCAAGCATAGACAATCTATTTCAATCAAAAACCA
AGACTTTTTTCTAATTATATCATATTTTTCAGAAAATGTTATATACCTAG
GTAAATTTGCAAGCATAGTTTTAATCAGGGCTTCCTTTTGTTTCTCATAG
AAGGTGAAGATGAAAATGAAATTGATTCGAATGATGAAGACGAACCAGGT
ATGGTTACTTAAAACGAGCGCAAGTAATTCTTGTTGTTCCTTCGCCAGCC
CTAAGTTTGTTTTCTAGATATCTCAAAAATCGGTAATTTTGCTATTAATT
CTTATGGACAATACCCAGTAGATCTCCTTTGTAGTGATTTATTTTTCTTT
TTTTAATTTTTCAGTTTCTTCTGGCAATTATGACCCCGCCGTTCAAGTGT
CTCGTATGCATTACGACTTGCTTTTTGGTAAGAGTGCTAGAAATAGACAA
GGAATTTATTTTGGAAGGTGGAACTATATGAATTGGGCTATTTCGTGATG
TTTCTATAAGTTAGAATCCTGAATATTCTTTTTTTTCAATCATGATGTTT
TACATTTCTGGCTAGATTTTATATCTTTCATGTAACTGCTCCTTATTCAA
TTTACTTCATTGTAGAGAAAGAAATTGATTTGGAGGCTTTCAAGGTTGTA
GAAGAAAAATTGAAACGCGCATCCGTCAAGGATTTTGAAAAGCACTGGTA
CGACATCAAAAAGCTTCTTTGCAAAATCCAATCTGGTGCTGTACCAAGCT
ACCGCCATGATGTTGTGAAGAGTTTGAAGAACCATTATTTTCGCGACAAT
CCGAAAGTCAAAATAAGAAAAATAGATCTTCAATATAGTCGAACGTGTAA
GATAATTTTTAAAAATTATGGTTTTCTTTTAATGTTTTCTTTTAATTGTG
GGAATGAAAAAATCAAAATTTTGTGTAAGTTACATGAATCAATAAGAGAA
CAAAACTCCCTAGCTAAAAATATATTTTTCTTCCTCTTTATATTATAGAT
TCCTTGACAGATGATGTTGACAATCTTATGTATCAGACGGTCATGGAGAC
TTTCCCTTCCTCCAATAGTAATGCTTTGAAATATGTCAGCGATGTCCTAT
TACCGGCAGCGTATAAATTTTTTGTTGTATACCACTGCGGGCTTGCGCCA
GATGAAGTACAATACTTCAACGAGAACTATGGTAAGCTTGTCTACTGTGT
CACTGCTTTTTACTATACCGAGCTGTTTAAAGTTACAGCATTGTAGCATG
CTAGATGATGGAACCTTTACAAACTCTTTTTTGCTTTTACTTGTCTTTTA
ATTACTTTGTAAGGATTCAAATAGCACGGGAAAAATAATCAATAAAATAA
ACCTTTTACTTTATCTAGACGACATGAGGAAGAAACTTGATTTCAAGGAT
GTAGAGGATGAATATCAAGCTGAATTGGACGTTGAAAGTTAGAATATTTA
TGTCTATTACTTCATCAAAAGCCATCGAAAATGAATTATATTTGTGTTTG
TGTTTATTACTTCATTTAAAGCCATTTGAGATGATATATTTCTTTTAAAT
GTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026620XLOC_026620Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042827-exon-sc0003710-1575043694:1633..1857TCONS_00042827-exon-sc0003710-1575043694:1633..1857Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1575043694:1360..1407TCONS_00042827-exon-sc0003710-1575043694:1360..1407Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1575043694:1131..1193TCONS_00042827-exon-sc0003710-1575043694:1131..1193Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1575043694:712..942TCONS_00042827-exon-sc0003710-1575043694:712..942Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1575043694:377..559TCONS_00042827-exon-sc0003710-1575043694:377..559Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1575043694:3..189TCONS_00042827-exon-sc0003710-1575043694:3..189Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1510915933:1633..1857TCONS_00042827-exon-sc0003710-1510915933:1633..1857Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1510915933:1360..1407TCONS_00042827-exon-sc0003710-1510915933:1360..1407Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1510915933:1131..1193TCONS_00042827-exon-sc0003710-1510915933:1131..1193Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1510915933:712..942TCONS_00042827-exon-sc0003710-1510915933:712..942Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1510915933:377..559TCONS_00042827-exon-sc0003710-1510915933:377..559Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1510915933:3..189TCONS_00042827-exon-sc0003710-1510915933:3..189Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1491911889:1633..1857TCONS_00042827-exon-sc0003710-1491911889:1633..1857Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1491911889:1360..1407TCONS_00042827-exon-sc0003710-1491911889:1360..1407Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1491911889:1131..1193TCONS_00042827-exon-sc0003710-1491911889:1131..1193Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1491911889:712..942TCONS_00042827-exon-sc0003710-1491911889:712..942Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1491911889:377..559TCONS_00042827-exon-sc0003710-1491911889:377..559Clytia hemisphaericaexon
TCONS_00042827-exon-sc0003710-1491911889:3..189TCONS_00042827-exon-sc0003710-1491911889:3..189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003710supercontigsc0003710:3..1857 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48373	0.801191	1.09696	0	2.4384	1.22458	1.48953	1.42544	0.602093	0.83692	1.12767	0.909855	0.636217	1.17958	1.11497	1.6809	1.21506	2.58136	1.53196	1.24264	0.822288	0.702146	3.85548	1.78149	0.882881	0	0	0	0.930849	1.08008
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top