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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042823 ID=TCONS_00042823|Name=TCONS_00042823|organism=Clytia hemisphaerica|type=transcript|length=515bp
CCGTTGACGAGATGGGGTGACAAATGCCATGGCGTAGAAGTCTACAATGA
TTTCACATATTATTATTCAGCATCTCCCTTGGATGAAGGTAAGGATGACC
CCTGGAAAGGCGGTAACGGCTTCCTACATGACAAAGAAGGAACGCCCAAC
AATTATGTTCATTGGTTTGATACATACCCTTTGGAGTTCGGTGAATTCCT
TGTGGAGACTTCTTTGAGATATGGAAGTTATATGCAAATACTGTCCGCTA
ACGATGCTATGTATGTCCGAGAAACAGTGGTTGTCGATCGAAATGCGGGG
ACGGTTGCTACAAAATCTACTAGAAGTGAACCACGTCAGCATTTGACCAG
CAAACTGAAGACTGACCACAACCGACAGATGACTGAGCTTCGAAGTCTTC
GTAAAGATCTCGTCTCTTATGAAGGTGGCGAAGAAGAAGCTGTGGAGTAT
AAGCAGAAAAATGATAATTTACATTTCCTTGGCTCGATGCCTTACGAACA
GAAAACCGTATTTGG Run BLAST on NCBI transcript from alignment at sc0003709:7258..10096- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042823 ID=TCONS_00042823|Name=TCONS_00042823|organism=Clytia hemisphaerica|type=transcript|length=2839bp|location=Sequence derived from alignment at sc0003709:7258..10096- (Clytia hemisphaerica)
CCGTTGACGAGATGGGGTGACAAATGCCATGGCGTAGAAGTCTACAATGA
TTTCACGTAAGAAACTTGTGCAATGTGTTCCACCTGGTTCTGCAAAAAAG
TATACTTAAAAAAGGAAAATTGAACTATCAAAAAACTTTAAGCATAGCCA
ACTTAAATTTTGGATTAGCTTATTCAGCGTTCTACGGTAATTCCCGTTGC
GAAGGGAGTCTTAGTTTCAGAAATATGAATCTTCAAGCACACCAAATTGG
AGATTAACAAAAGTCGAGAAATTTTCAAAGCAAAAAAGCTAATTAACTTT
TGATTGACAGCTCTCTTTTATGTCATTTTGATGAAATTTTCAACTTTAAT
GGTGAAACGTATGCACCATCCAAGTCAAATTTCTCGTTAATGAACAGCTG
GTTGATTTTAATTCTTTCGGCAATGGAAAGAAGAAGAATTTTTCTTTCTG
CTGCATGTGAAATTAACTTTTATGAACATTTCTACCTTTAGCAAATTAAC
GTTAGTTATGACGAGCTAGCTTATTTTGGAATAACTTACTTCATTTTCAA
TGTTGAAAATGTCCCTTGTGTACTTAGCTTACTTAACACTTGATATCTCT
GGAACTAAAAACCTTCTGAAGTAAATTTTTAAGCACAGAGAGCTGAGTAG
CTATGCTTTCAACTATACTAAAAATTAAAGTTATTGGTTAAGTCATTTTA
TCACAGAATTCCTTTTTTTTTAGTATACTTTTTTTGCGCAGCACACTATT
CCATACAGGAGGGTGGACGAACCTTTTTAAGGTAAAAAATAAAAATTTAG
AGAAGTGATAATACCCCCTGGAAATTTGTAAAAGAAGTCTTGGAAAAATT
ATTTTNAGGTAAAAAATAAAAATTTAGAGAAGTGATAATACCCCCTGGAA
ATTTGTAAAAGAAGTCTTGGAAAAATTATTTTCATACCTTAAAGTAACGG
TGGACGAACAAAAATTAGCCTTTAGTAACCCCCTGCAAATTTTAGAATAT
ATAACCTTTGACCTACTGGAAAAATGAAAAGATAAATGGATAGGTTAGCC
CCCCCTGTACAGATATAAAATGGAATGGGCCATTTTTCAACTGATTTTCG
ACTGATTCGAAGAATTAAATCCACGTGATATATTTGATTCGAAAAATAAA
ACAAGAATGAATTTTGCTTTTTTTTTTGACTCGCGGAATTAAATTTCCCA
TTATCTCTTACTTAGATACTATTATTCAGCATCACCCTTGGATGAAGGTA
AGGATGACCCTNCCACGTGATATATCTGATTCGAGAAATAAAACAAGAAT
GACTTGAATTTCCCATTATCTCTTACTTAGATATTATTATTCAGCATCTC
CCTTGGATGAAGGTAAGGATGACCCCTGGAAAGGCGGTAACGGCTTCCTA
CATGACAAAGAAGGAACGCCCAACAATTATGTTCATTGGTTTGATACATA
CCCTTTGGAGTTCGGTGAATTCCTTGTGGAGACTTCTTTGAGATATGGAA
GTTATATGCAAATACTGTCCGCTAACGATGCTATGTATGTCCGAGAAACA
GTGGTTGTCGATCGAAGTAAGTGTTTTATTTTAGCACACCTAAAGGGAAC
TAATTTTCGCAAAACTTATTTTCGCAGAATTAATTTCTTCGTTTTTAATT
GTCTACCGCGAAAAAATTACTTCACTTAAGGTAACCGCTTGTCTGATGAT
GCTGAAAATTTGACTGCAAGCTTCATCAGTACATAAGACTGATGATCAAA
AGTTCATGTCAATAGCATTTTCCGATCCATTAATACAGTAACTTAGGGCT
CATTTAGGGACAAAAGACAACTTTTGGGTCGTTCTGTAAAATCTACGATA
CTAGAAAGTTGCAAAGAATTGATCCGCTGTCCCAAAAATAAATGTCACAC
GGAGTTACCTCACAAAACTTTAGCAGAAAAACAAATAAAGTGAAAAAAGG
GGTCCTTTTCCTCAGCATTTTCAAAGAATGACTACGTCGCCAATGATATG
TGCACACTTGCAAAATTTCAATTAATATAGATATTCCAAATGTTATCAGA
AAGGTTTTTTTTCCAAGATGCTCGAATGCTTCAGAAATGTTTACGCAAGG
TCATAGGACAGCTTGCTCAGGCATCGAAGGAGGAGGAGGAATTCCAACTA
GGAATCTCTGTTNCCAAGATGCTCGAATGCTTCAGAAATGTTTACGCAAG
GTCATAGGACAGCTTGCTCAGGCATCGAAGGAGGAGGAGGAATTCGAACT
AGGAATCTCTGTTTCGTAAAGATTGTAGCTTAAACCAGTCGCTCATCGCT
TCTTCTATTTCTTTAGCACGGGGTCCACTTAAGTTAAAGCTTTTTGATAG
AATGGCTGGTGCGATTAAGTGTCCTGGTAGTATATATGGCAATATGCTTT
TGCTTAAGATTTTAGTTGTTTTTGGAAGGTAAAAACAGTACAGTACGAGG
CAATGTATTATTTATCTCCAAGTATTTTTATTGTTAGTTGGATTTTTAAC
ATTTTCTCTCAAAATGGCGACCTTGCCAAACGCTCCTAGTCTACTTCACT
GGACTCATTCTTTTATCAAAAAGCAAAGTTCAGCCAAAAGTAGACTCTGG
TCTTCTATTTCTTTAGATGCGGGGACGGTTGCTACAAAATCTACTAGAAG
TGAACCACGTCAGCATTTGACCAGCAAACTGAAGACTGACCACAACCGAC
AGATGACTGAGCTTCGAAGTCTTCGTAAAGATCTCGTCTCTTATGAAGGT
GGCGAAGAAGAAGCTGTGGAGTATAAGCAGAAAAATGATAATTTACATTT
CCTTGGCTCGATGCCTTACGAACAGAAAACCGTATTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042823-exon-sc0003709-1575043694:10041..10096 | TCONS_00042823-exon-sc0003709-1575043694:10041..10096 | Clytia hemisphaerica | exon |
| TCONS_00042823-exon-sc0003709-1575043694:8531..8766 | TCONS_00042823-exon-sc0003709-1575043694:8531..8766 | Clytia hemisphaerica | exon |
| TCONS_00042823-exon-sc0003709-1575043694:7258..7480 | TCONS_00042823-exon-sc0003709-1575043694:7258..7480 | Clytia hemisphaerica | exon |
| TCONS_00042823-exon-sc0003709-1510915933:10041..10096 | TCONS_00042823-exon-sc0003709-1510915933:10041..10096 | Clytia hemisphaerica | exon |
| TCONS_00042823-exon-sc0003709-1510915933:8531..8766 | TCONS_00042823-exon-sc0003709-1510915933:8531..8766 | Clytia hemisphaerica | exon |
| TCONS_00042823-exon-sc0003709-1510915933:7258..7480 | TCONS_00042823-exon-sc0003709-1510915933:7258..7480 | Clytia hemisphaerica | exon |
| TCONS_00042823-exon-sc0003709-1491911889:10041..10096 | TCONS_00042823-exon-sc0003709-1491911889:10041..10096 | Clytia hemisphaerica | exon |
| TCONS_00042823-exon-sc0003709-1491911889:8531..8766 | TCONS_00042823-exon-sc0003709-1491911889:8531..8766 | Clytia hemisphaerica | exon |
| TCONS_00042823-exon-sc0003709-1491911889:7258..7480 | TCONS_00042823-exon-sc0003709-1491911889:7258..7480 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003709 | supercontig | sc0003709:7258..10096 - |
Blast
The following BLAST results are available for this feature:
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