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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042822 ID=TCONS_00042822|Name=TCONS_00042822|organism=Clytia hemisphaerica|type=transcript|length=1049bp
CAGGTATTTATGATATTTTCAACTACCGTGATGATGACGACAACTTTCAA
CAATATTACCCCATCCAGATTGGCGACGCTGAACAAACACCAGATTGTTC
AGTCGACAGTTTCAAAGTAGAACAAACTTCCGGAAATCGTTTAGCCTTCA
TAATGCCCAAGGCTCAAAAATTGAAAGGTGTTAAAAAACAGCGGATCTCT
GAGCACATTGTTTGGCAGTACACCGTTGAAGTTTATGATGGTTACAAACC
AAAAACAGCCATCACATGCCATCGAGGTTATTTCAAACTTCACGAAGACT
ACCGAACAAAGGTTCAACTCAAAAAAATTCCTGCCAGAGATATCACTTGG
ATTCGTATTCAAGCTTATGATGTGAGAAATCCACATCGAAGAGCTTGGTT
TCAACCTATAATGGGACCAAAGTTCAGCAATTTTAGTTCAGAATTGACAA
ACACCATTTGGAACATGCACAAAGTTATCGGGAATGCAAGTACGGGTGAA
GAAATGTTTAACATTTATGAGCAAAATGATGAATTCATTCCTGGCCGCGC
GTCCGCATCAAGTCTTCATTTCGATCTCGGAACCGTAGGTGAAAAAGAAG
AACACAACTTGTGCGTCTACAATCTCCAAGTTGCAGCAAACAAACAACAG
AAAGTTCCAAAAAGTCATACACAAAATACATCAAATGGGGAACCACCAAG
CTATCTTCAAAACGTCTGTGGTGTTTTGCAGTTATCCACAAAATATCCAA
CTAAATTGGATTTGAAGAAAAGCTGGGATGCTACTACCGTtaagaaagat
aaaaataaaaaagcatgCGCTTATATTTACATGGTAACAAAATCTGGTGA
ACTCAAATAAACTCGCCTTCTAAACGGTTGGTTTTGTTCAATAGCCActa
aaaggaaaaaaacttttttcatcttGAATAGATATATAGTAACAAATTaa
cattatttttgtattttggggTAGATTATATGGAAGAATTTAGGATTAAT
ACGTAAATGACGGGTAGGGCACTCCAATACGCGTGTACCACGACTGAAT Run BLAST on NCBI protein sequence of TCONS_00042822-protein >TCONS_00042822-protein ID=TCONS_00042822-protein|Name=TCONS_00042822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
GIYDIFNYRDDDDNFQQYYPIQIGDAEQTPDCSVDSFKVEQTSGNRLAFI
MPKAQKLKGVKKQRISEHIVWQYTVEVYDGYKPKTAITCHRGYFKLHEDY
RTKVQLKKIPARDITWIRIQAYDVRNPHRRAWFQPIMGPKFSNFSSELTN
TIWNMHKVIGNASTGEEMFNIYEQNDEFIPGRASASSLHFDLGTVGEKEE
HNLCVYNLQVAANKQQKVPKSHTQNTSNGEPPSYLQNVCGVLQLSTKYPT
KLDLKKSWDATTVKKDKNKKACAYIYMVTKSGELK Run BLAST on NCBI transcript from alignment at sc0003709:4173..5644- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042822 ID=TCONS_00042822|Name=TCONS_00042822|organism=Clytia hemisphaerica|type=transcript|length=1472bp|location=Sequence derived from alignment at sc0003709:4173..5644- (Clytia hemisphaerica)
CAGGTATTTATGATATTTTCAACTACCGTGATGATGACGACAACTTTCAA
CAATATTACCCCATCCAGATTGGCGACGCTGAACAAACACCAGATTGTTC
AGTCGACAGTTTCAAAGTAGAACAAACTTCCGGAAATCGTTTAGCCTTCA
TAATGCCCAAGGCTCAAAAATTGAAAGGTGTTAAAAAACAGCGGATCTCT
GAGCACATTGTTTGGCAGTACACCGTTGAAGTTTATGATGGTTACAAACC
AAAAACAGCCATCACATGCCATCGAGGTTATTTCAAACTTCACGAAGACT
ACCGAACAAAGGTTCAACTCAAAAAAATTCCTGCCAGAGATATCACTTGG
ATTCGTATTCAAGCTTATGATGTGAGAAATCCACATCGAAGAGCTTGGTT
TCAACCTATAATGGGACCAAAGTTCAGCAGTATGTAAATGTCTTATTTGA
TAGAAAAGTAACTCCAAATCATAAAGTTTGAAGCCTGAAGGGTTAAATGG
GACTGTTCGACTTTTCCCGAACAAGAAAAAGTAAAGCCTTAACATAAAGC
GCCGTATTTTGTAAAAATCGAGAAAGTCACATGTTTTGAATTGAGAATGC
GCAACATTATGATCTAGCCCCTTAGGGTTTTTTTAAACTGGAATATTTTG
AGAGCGGTATCTATTTTTATTAATAAAGTTTTTGTACTGCAGGACGCCAC
TTTGTTAAAATTATAAGCTCTTCCCCCAACTTTCAAAAGAGGTTCAGGTC
AGCTAGGCTTGAATGAAGCTTTTAAGATATAAAATAATATTTTAAGTTCT
TAAAGAAAAATCATAAAAAACTCTTCCAGTATGAAGGCGTATTTCATTTC
AGATTTTAGTTCAGAATTGACAAACACCATTTGGAACATGCACAAAGTTA
TCGGGAATGCAAGTACGGGTGAAGAAATGTTTAACATTTATGAGCAAAAT
GATGAATTCATTCCTGGCCGCGCGTCCGCATCAAGTCTTCATTTCGATCT
CGGAACCGTAGGTGAAAAAGAAGAACACAACTTGTGCGTCTACAATCTCC
AAGTTGCAGCAAACAAACAACAGAAAGTTCCAAAAAGTCATACACAAAAT
ACATCAAATGGGGAACCACCAAGCTATCTTCAAAACGTCTGTGGTGTTTT
GCAGTTATCCACAAAATATCCAACTAAATTGGATTTGAAGAAAAGCTGGG
ATGCTACTACCGTTAAGAAAGATAAAAATAAAAAAGCATGCGCTTATATT
TACATGGTAACAAAATCTGGTGAACTCAAATAAACTCGCCTTCTAAACGG
TTGGTTTTGTTCAATAGCCACTAAAAGGAAAAAAACTTTTTTCATCTTGA
ATAGATATATAGTAACAAATTAACATTATTTTTGTATTTTGGGGTAGATT
ATATGGAAGAATTTAGGATTAATACGTAAATGACGGGTAGGGCACTCCAA
TACGCGTGTACCACGACTGAAT Coding sequence (CDS) from alignment at sc0003709:4173..5644- >TCONS_00042822 ID=TCONS_00042822|Name=TCONS_00042822|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at sc0003709:4173..5644- (Clytia hemisphaerica)
ATTTTAGTTCAGAATTGACAAACACCATTTGGAACATGCACAAAGTTATC
GGGAATGCAAGTACGGGTGAAGAAATGTTTAACATTTATGAGCAAAATGA
TGAATTCATTCCTGGCCGCGCGTCCGCATCAAGTCTTCATTTCGATCTCG
GAACCGTAGGTGAAAAAGAAGAACACAACTTGTGCGTCTACAATCTCCAA
GTTGCAGCAAACAAACAACAGAAAGTTCCAAAAAGTCATACACAAAATAC
ATCAAATGGGGAACCACCAAGCTATCTTCAAAACGTCTGTGGTGTTTTGC
AGTTATCCACAAAATATCCAACTAAATTGGATTTGAAGAAAAGCTGGGAT
GCTACTACCGTTAAGAAAGATAAAAATAAAAAAGCATGCGCTTATATTTA
CATGGTAACAAAATCTGGTGAACTCAAATAAGGTATTTATGATATTTTCA
ACTACCGTGATGATGACGACAACTTTCAACAATATTACCCCATCCAGATT
GGCGACGCTGAACAAACACCAGATTGTTCAGTCGACAGTTTCAAAGTAGA
ACAAACTTCCGGAAATCGTTTAGCCTTCATAATGCCCAAGGCTCAAAAAT
TGAAAGGTGTTAAAAAACAGCGGATCTCTGAGCACATTGTTTGGCAGTAC
ACCGTTGAAGTTTATGATGGTTACAAACCAAAAACAGCCATCACATGCCA
TCGAGGTTATTTCAAACTTCACGAAGACTACCGAACAAAGGTTCAACTCA
AAAAAATTCCTGCCAGAGATATCACTTGGATTCGTATTCAAGCTTATGAT
GTGAGAAATCCACATCGAAGAGCTTGGTTTCAACCTATAATGGGACCAAA
GTTCAGCAATTTTAGTTCAGAATTGACAAACACCATTTGGAACATGCACA
AAGTTATCGGGAATGCAAGTACGGGTGAAGAAATGTTTAACATTTATGAG
CAAAATGATGAATTCATTCCTGGCCGCGCGTCCGCATCAAGTCTTCATTT
CGATCTCGGAACCGTAGGTGAAAAAGAAGAACACAACTTGTGCGTCTACA
ATCTCCAAGTTGCAGCAAACAAACAACAGAAAGTTCCAAAAAGTCATACA
CAAAATACATCAAATGGGGAACCACCAAGCTATCTTCAAAACGTCTGTGG
TGTTTTGCAGTTATCCACAAAATATCCAACTAAATTGGATTTGAAGAAAA
GCTGGGATGCTACTACCGTTAAGAAAGATAAAAATAAAAAAGCATGCGCT
TATATTTACATGGTAACAAAATCTGGTGAACTCAAATAAGGTATTTATGA
TATTTTCAACTACCGTGATGATGACGACAACTTTCAACAATATTACCCCA
TCCAGATTGGCGACGCTGAACAAACACCAGATTGTTCAGTCGACAGTTTC
AAAGTAGAACAAACTTCCGGAAATCGTTTAGCCTTCATAATGCCCAAGGC
TCAAAAATTGAAAGGTGTTAAAAAACAGCGGATCTCTGAGCACATTGTTT
GGCAGTACACCGTTGAAGTTTATGATGGTTACAAACCAAAAACAGCCATC
ACATGCCATCGAGGTTATTTCAAACTTCACGAAGACTACCGAACAAAGGT
TCAACTCAAAAAAATTCCTGCCAGAGATATCACTTGGATTCGTATTCAAG
CTTATGATGTGAGAAATCCACATCGAAGAGCTTGGTTTCAACCTATAATG
GGACCAAAGTTCAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042822-exon-sc0003709-1575043694:5216..5644 | TCONS_00042822-exon-sc0003709-1575043694:5216..5644 | Clytia hemisphaerica | exon |
| TCONS_00042822-exon-sc0003709-1575043694:4173..4792 | TCONS_00042822-exon-sc0003709-1575043694:4173..4792 | Clytia hemisphaerica | exon |
| TCONS_00042822-exon-sc0003709-1510915933:5216..5644 | TCONS_00042822-exon-sc0003709-1510915933:5216..5644 | Clytia hemisphaerica | exon |
| TCONS_00042822-exon-sc0003709-1510915933:4173..4792 | TCONS_00042822-exon-sc0003709-1510915933:4173..4792 | Clytia hemisphaerica | exon |
| TCONS_00042822-exon-sc0003709-1491911889:5216..5644 | TCONS_00042822-exon-sc0003709-1491911889:5216..5644 | Clytia hemisphaerica | exon |
| TCONS_00042822-exon-sc0003709-1491911889:4173..4792 | TCONS_00042822-exon-sc0003709-1491911889:4173..4792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003709 | supercontig | sc0003709:4173..5644 - |
Blast
The following BLAST results are available for this feature:
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