TCONS_00042820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042820
Unique NameTCONS_00042820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042820 ID=TCONS_00042820|Name=TCONS_00042820|organism=Clytia hemisphaerica|type=transcript|length=492bp
CCATTGGTATAGTCCCTCGACTTTGTAATTTGATCCCTAATGGAAACATG
CATTGTAACAAGCTGGAATCATCGAAATATCTCTTTTGTGTCGTAGCTGG
TAAAAACGAAGAGGACTTATCGAAACTGGTAAGAGAACTGTTTTCGACAG
CAGATAATCTTGAATGCCGTAGCCTGGCTAAAGCTGCAATCGAATTCCCG
AATATAAATCGAACAGAAATTGCCGAAACATACGTTACGGAATTGACTTC
AAAACAAACTAAATTTATGAAATTGGTGCGATTTGCTGGACCGAAAAGAA
GTATTGGAGCGATTTTCAGAGATTTGGACAAATtggttaagggctctgac
catagtccaaaaattgattttggtatttgaacataaaaattatatttcag
gttccttaacacttttaacaaagaattgcctttatgaattgctttttaat
cgaatcccttaagagtaattaagaatttaattgcaaaaatgc
Run BLAST on NCBI

protein sequence of TCONS_00042820-protein

>TCONS_00042820-protein ID=TCONS_00042820-protein|Name=TCONS_00042820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
IGIVPRLCNLIPNGNMHCNKLESSKYLFCVVAGKNEEDLSKLVRELFSTA
DNLECRSLAKAAIEFPNINRTEIAETYVTELTSKQTKFMKLVRFAGPKRS
IGAIFRDLDKLVKGSDHSPKIDFGI
Run BLAST on NCBI

transcript from alignment at sc0003707:3391..4554-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042820 ID=TCONS_00042820|Name=TCONS_00042820|organism=Clytia hemisphaerica|type=transcript|length=1164bp|location=Sequence derived from alignment at sc0003707:3391..4554- (Clytia hemisphaerica)
CCATTGGTATAGTCCCTCGACTTTGTAATTTGATCCCTAATGGAAACATG
CATTGTAACAAGCTGGAATCATCGAAATATCTCTTTTGTGTCGTAGGTAT
GAATGAATTGCCTTCTTATCCATATTTTTTTATATCGCTTGTTACCGTAA
GTAGCGCAGGCCTTCTTTGGAATACAAACTAGGATTGCACAAGTATAGAT
TTTAATCTGGCAGTCAACAATTTGTGATGTAACTATGGGAAATACTTTGA
AAAGAACCCGAGATGAAGAGCTTATATCTATATTGAAAATGTGTCAGCAA
GTGTTTGTGTTAGTAATTGTATGACTTTGAGGGTATTTTAGGCCGAGGTT
TATTTTGACGTTTTGGAATTGCCCAAAAGAAGTAAAACCTGAAAGACTTA
TTTTTCCTTGATTTTCTTTTTTTTTCTCAGTCTTTTGCATCACTGTGTAA
CCTGGGATTTAACAAGCACTTTCCCGTGCGACCCACAGTTGAGATTTCTC
CGAAATTTAGCCTGTGGAGACGGACGATGAGAGCTTTATTGCACGTGTCT
CAATCACATAACTGTTCTTTTCTTATTTGTGATCTAATTGACACGGCTTC
ATCTAAGATTCCTAATGATTGCCATGGTTACTTTTATTCATGAGTGTGGT
TATTAACCACAAAAAAACGGGATCATAAGATGTGATACTCACGGTAACAG
CACTTATCACTTACTTTATGTAATTTATAAGAGGAAATCGCATAAATTGA
TGTGTTTTCTTGTTATAGCTGGTAAAAACGAAGAGGACTTATCGAAACTG
GTAAGAGAACTGTTTTCGACAGCAGATAATCTTGAATGCCGTAGCCTGGC
TAAAGCTGCAATCGAATTCCCGAATATAAATCGAACAGAAATTGCCGAAA
CATACGTTACGGAATTGACTTCAAAACAAACTAAATTTATGAAATTGGTG
CGATTTGCTGGACCGAAAAGAAGTATTGGAGCGATTTTCAGAGATTTGGA
CAAATTGGTTAAGGGCTCTGACCATAGTCCAAAAATTGATTTTGGTATTT
GAACATAAAAATTATATTTCAGGTTCCTTAACACTTTTAACAAAGAATTG
CCTTTATGAATTGCTTTTTAATCGAATCCCTTAAGAGTAATTAAGAATTT
AATTGCAAAAATGC

Coding sequence (CDS) from alignment at sc0003707:3391..4554-

>TCONS_00042820 ID=TCONS_00042820|Name=TCONS_00042820|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at sc0003707:3391..4554- (Clytia hemisphaerica)
CTGGTAAAAACGAAGAGGACTTATCGAAACTGGTAAGAGAACTGTTTTCG
ACAGCAGATAATCTTGAATGCCGTAGCCTGGCTAAAGCTGCAATCGAATT
CCCGAATATAAATCGAACAGAAATTGCCGAAACATACGTTACGGAATTGA
CTTCAAAACAAACTAAATTTATGAAATTGGTGCGATTTGCTGGACCGAAA
AGAAGTATTGGAGCGATTTTCAGAGATTTGGACAAATTGGTTAAGGGCTC
TGACCATAGTCCAAAAATTGATTTTGGTATTTGAATTGGTATAGTCCCTC
GACTTTGTAATTTGATCCCTAATGGAAACATGCATTGTAACAAGCTGGAA
TCATCGAAATATCTCTTTTGTGTCGTAGCTGGTAAAAACGAAGAGGACTT
ATCGAAACTGGTAAGAGAACTGTTTTCGACAGCAGATAATCTTGAATGCC
GTAGCCTGGCTAAAGCTGCAATCGAATTCCCGAATATAAATCGAACAGAA
ATTGCCGAAACATACGTTACGGAATTGACTTCAAAACAAACTAAATTTAT
GAAATTGGTGCGATTTGCTGGACCGAAAAGAAGTATTGGAGCGATTTTCA
GAGATTTGGACAAATTGGTTAAGGGCTCTGACCATAGTCCAAAAATTGAT
TTTGGTATTTGAATTGGTATAGTCCCTCGACTTTGTAATTTGATCCCTAA
TGGAAACATGCATTGTAACAAGCTGGAATCATCGAAATATCTCTTTTGTG
TCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026614XLOC_026614Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042820-proteinTCONS_00042820-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042820-exon-sc0003707-1575043694:4459..4554TCONS_00042820-exon-sc0003707-1575043694:4459..4554Clytia hemisphaericaexon
TCONS_00042820-exon-sc0003707-1575043694:3391..3786TCONS_00042820-exon-sc0003707-1575043694:3391..3786Clytia hemisphaericaexon
TCONS_00042820-exon-sc0003707-1510915933:4459..4554TCONS_00042820-exon-sc0003707-1510915933:4459..4554Clytia hemisphaericaexon
TCONS_00042820-exon-sc0003707-1510915933:3391..3786TCONS_00042820-exon-sc0003707-1510915933:3391..3786Clytia hemisphaericaexon
TCONS_00042820-exon-sc0003707-1491911889:4459..4554TCONS_00042820-exon-sc0003707-1491911889:4459..4554Clytia hemisphaericaexon
TCONS_00042820-exon-sc0003707-1491911889:3391..3786TCONS_00042820-exon-sc0003707-1491911889:3391..3786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003707supercontigsc0003707:3391..4554 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.859335	0.263536	0.343448	0.324513	6.20761	4.13279	5.96344	6.20439	29.172	19.2983	30.6092	39.0901	29.4708	25.2358	28.26	24.5438	15.1817	21.463	34.9746	39.7645	16.412	18.6621	7.39948	12.3265	4.58521	3.14477	15.9812	22.3211	8.73655	6.64782
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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