TCONS_00042819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042819
Unique NameTCONS_00042819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042819 ID=TCONS_00042819|Name=TCONS_00042819|organism=Clytia hemisphaerica|type=transcript|length=546bp
TTAACTTGTAAGTGTTCAAGCAGTCTCTTGAGTGGTCAAGTCTCATCGCC
ATTTGGCTGTGAGTCAAATAAACATTATTGGTCTTTGACAAGTGTTTGTC
TGTTGCATATGCACTATCCATTGTAGATTTCAATTTCGCATGGTTTTCTA
GCTTTTTACATTGTTCATTAATATCAGAGTCGATGCCTGGCTGAATCAAA
TAGTTACTTGATGCACAACTCTTGCTATGGAATGACCCATTCTCAAAAAC
AATATCTTTAAATTGATCAGTGCTAAATAACTGAAATGGAAAGTTACTGA
AGATCTCTCNGCTATGGAATGACCCATTCTCAAAAACAATATCTTTAAAT
TGATCAGTGCTAAATAACTGAAATGGAAAGTTACTGAAGATCTCTCCAAC
AACAGGGGGAACATATCCTTTACATTTTGTCAATGGAATATTTGTAGCTG
TGCTTTTAGAGGTGATATGATTTGTTTCTTCTTGTGGTTCAATCAATTCA
ACAAAATCATCTTCAGAAACACCATCACTCAGGTCTGCTTGGCGAG
Run BLAST on NCBI

protein sequence of TCONS_00042819-protein

>TCONS_00042819-protein ID=TCONS_00042819-protein|Name=TCONS_00042819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
RQADLSDGVSEDDFVELIEPQEETNHITSKSTATNIPLTKCKGYVPPVVG
EIFSNFPFQLFSTDQFKDIVFENGSFHSXEIFSNFPFQLFSTDQFKDIVF
ENGSFHSKSCASSNYLIQPGIDSDINEQCKKLENHAKLKSTMDSAYATDK
HLSKTNNVYLTHSQMAMRLDHSRDCLNTYKL
Run BLAST on NCBI

transcript from alignment at sc0003705:20..565

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042819 ID=TCONS_00042819|Name=TCONS_00042819|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at sc0003705:20..565 (Clytia hemisphaerica)
CTCGCCAAGCAGACCTGAGTGATGGTGTTTCTGAAGATGATTTTGTTGAA
TTGATTGAACCACAAGAAGAAACAAATCATATCACCTCTAAAAGCACAGC
TACAAATATTCCATTGACAAAATGTAAAGGATATGTTCCCCCTGTTGTTG
GAGAGATCTTCAGTAACTTTCCATTTCAGTTATTTAGCACTGATCAATTT
AAAGATATTGTTTTTGAGAATGGGTCATTCCATAGCNGAGAGATCTTCAG
TAACTTTCCATTTCAGTTATTTAGCACTGATCAATTTAAAGATATTGTTT
TTGAGAATGGGTCATTCCATAGCAAGAGTTGTGCATCAAGTAACTATTTG
ATTCAGCCAGGCATCGACTCTGATATTAATGAACAATGTAAAAAGCTAGA
AAACCATGCGAAATTGAAATCTACAATGGATAGTGCATATGCAACAGACA
AACACTTGTCAAAGACCAATAATGTTTATTTGACTCACAGCCAAATGGCG
ATGAGACTTGACCACTCAAGAGACTGCTTGAACACTTACAAGTTAA

Coding sequence (CDS) from alignment at sc0003705:20..565

>TCONS_00042819 ID=TCONS_00042819|Name=TCONS_00042819|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0003705:20..565 (Clytia hemisphaerica)
CGCCAAGCAGACCTGAGTGATGGTGTTTCTGAAGATGATTTTGTTGAATT
GATTGAACCACAAGAAGAAACAAATCATATCACCTCTAAAAGCACAGCTA
CAAATATTCCATTGACAAAATGTAAAGGATATGTTCCCCCTGTTGTTGGA
GAGATCTTCAGTAACTTTCCATTTCAGTTATTTAGCACTGATCAATTTAA
AGATATTGTTTTTGAGAATGGGTCATTCCATAGCNGAGAGATCTTCAGTA
ACTTTCCATTTCAGTTATTTAGCACTGATCAATTTAAAGATATTGTTTTT
GAGAATGGGTCATTCCATAGCAAGAGTTGTGCATCAAGTAACTATTTGAT
TCAGCCAGGCATCGACTCTGATATTAATGAACAATGTAAAAAGCTAGAAA
ACCATGCGAAATTGAAATCTACAATGGATAGTGCATATGCAACAGACAAA
CACTTGTCAAAGACCAATAATGTTTATTTGACTCACAGCCAAATGGCGAT
GAGACTTGACCACTCAAGAGACTGCTTGAACACTTACAAGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026613XLOC_026613Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042819-proteinTCONS_00042819-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042819-exon-sc0003705-1491911889:20..565TCONS_00042819-exon-sc0003705-1491911889:20..565Clytia hemisphaericaexon
TCONS_00042819-exon-sc0003705-1510915933:20..565TCONS_00042819-exon-sc0003705-1510915933:20..565Clytia hemisphaericaexon
TCONS_00042819-exon-sc0003705-1575043694:20..565TCONS_00042819-exon-sc0003705-1575043694:20..565Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003705supercontigsc0003705:20..565 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105275	0.30798	0.125082	1.09499	0.283939	0.224372	0.135348	0	0.0887134	0	0	0.140225	0.0700152	0.145423	0	0	0	0	0.11191	0	0	0	0	0	0.339088	0.201752	0	0	0.116847	0.119049
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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