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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042818 ID=TCONS_00042818|Name=TCONS_00042818|organism=Clytia hemisphaerica|type=transcript|length=641bp
TGCAAACTATACTTCCTCAGTCAGAGTCAGACGTCTCAGACTCTAAACCA
TTATTTAAATGTGACCTTTGTCAGAAAGAATACTTCAGAGAAAGGGGAAT
AAAGACACACAAAAAAACATGCAAAGgATCAAAAGCACAGTCCTCAAAGA
AGCCAACGGCAGCAAGTGGAAAGCCCAAAAAACCTATTGcaccaaagaaa
aaaacaccagcTGTGTTGTTGAAGGAAAAATTCTTAAATTCGTCCGTCAA
CATATTGGAAACATCGTTAAAATATGCTGCTGATGACCCTTTCTTCATGA
TCAGAGAGCCTGGCAAAAGTGCAGCATTGTTGGCTTCAAAACTCATTCCG
CTATCAAGTAACAAAAACGCCAAAATATTTGTGGAAGGATTCATCAAAGC
AAtgcatgaaaaattgaaaaagaagagTGTGTCAAAACCTTACCACATAA
ACTTATTCAAGCTTTTTAACAAACAGTGTTTTGCAGACGAACATATAAAT
AATTGGAAGTTATTCCTAGCATTGGTAGGGAGTGATCTCGATCAAACAAG
AATGCTTTTTAATTTCGTCACCTCAAAAATCCTTGAGAAGTTACTAAAGA
TAAGAAGGGAGTTCTTTCTTCCTgatacaaacaacaaagag Run BLAST on NCBI protein sequence of TCONS_00042818-protein >TCONS_00042818-protein ID=TCONS_00042818-protein|Name=TCONS_00042818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
QTILPQSESDVSDSKPLFKCDLCQKEYFRERGIKTHKKTCKGSKAQSSKK
PTAASGKPKKPIAPKKKTPAVLLKEKFLNSSVNILETSLKYAADDPFFMI
REPGKSAALLASKLIPLSSNKNAKIFVEGFIKAMHEKLKKKSVSKPYHIN
LFKLFNKQCFADEHINNWKLFLALVGSDLDQTRMLFNFVTSKILEKLLKI
RREFFLPDTNNKE Run BLAST on NCBI transcript from alignment at sc0003705:9093..10093+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042818 ID=TCONS_00042818|Name=TCONS_00042818|organism=Clytia hemisphaerica|type=transcript|length=1001bp|location=Sequence derived from alignment at sc0003705:9093..10093+ (Clytia hemisphaerica)
TGCAAACTATACTTCCTCAGTCAGAGTCAGACGTCTCAGACTCTAAACCA
TTATTTAAATGTGACCTTTGTCAGAAAGAATACTTCAGAGAAAGGGGAAT
AAAGACACACAAAAAAACATGCAAAGGTAACcggcaaaattattttgatc
ttTATAAATTCCAGTCTGCCAGTGAAATAAAATTCAACGTTGAGTTTTAT
AGATTTGATTATAATGCCTAATGGTTGTTTGTTTTTCAACTTCATTTAAA
ACTTGATTCACCACATTTTTTTGGTAGATAGAAGCTTGTTTTATGTAATA
GCTTTTTTTTCTTCGAGAAATAAAGAATGGCATTATTAAAGCAAACTCTG
GATATATGTACATTTTGTTGCTCATTCCCGCCCCTCTGAGAGTGTTCTAT
TTTATGCCTGAGTATAGCCCTTTTCATCATGGGTGTTAAAGAAACAAGAG
TTTGAacatcattttttcaacttttcatgtttttaggATCAAAAGCACAG
TCCTCAAAGAAGCCAACGGCAGCAAGTGGAAAGCCCAAAAAACCTATTGc
accaaagaaaaaaacaccagcTGTGTTGTTGAAGGAAAAATTCTTAAATT
CGTCCGTCAACATATTGGAAACATCGTTAAAATATGCTGCTGATGACCCT
TTCTTCATGATCAGAGAGCCTGGCAAAAGTGCAGCATTGTTGGCTTCAAA
ACTCATTCCGCTATCAAGTAACAAAAACGCCAAAATATTTGTGGAAGGAT
TCATCAAAGCAAtgcatgaaaaattgaaaaagaagagTGTGTCAAAACCT
TACCACATAAACTTATTCAAGCTTTTTAACAAACAGTGTTTTGCAGACGA
ACATATAAATAATTGGAAGTTATTCCTAGCATTGGTAGGGAGTGATCTCG
ATCAAACAAGAATGCTTTTTAATTTCGTCACCTCAAAAATCCTTGAGAAG
TTACTAAAGATAAGAAGGGAGTTCTTTCTTCCTgatacaaacaacaaaga
g Coding sequence (CDS) from alignment at sc0003705:9093..10093+ >TCONS_00042818 ID=TCONS_00042818|Name=TCONS_00042818|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0003705:9093..10093+ (Clytia hemisphaerica)
CAAACTATACTTCCTCAGTCAGAGTCAGACGTCTCAGACTCTAAACCATT
ATTTAAATGTGACCTTTGTCAGAAAGAATACTTCAGAGAAAGGGGAATAA
AGACACACAAAAAAACATGCAAAGgATCAAAAGCACAGTCCTCAAAGAAG
CCAACGGCAGCAAGTGGAAAGCCCAAAAAACCTATTGcaccaaagaaaaa
aacaccagcTGTGTTGTTGAAGGAAAAATTCTTAAATTCGTCCGTCAACA
TATTGGAAACATCGTTAAAATATGCTGCTGATGACCCTTTCTTCATGATC
AGAGAGCCTGGCAAAAGTGCAGCATTGTTGGCTTCAAAACTCATTCCGCT
ATCAAGTAACAAAAACGCCAAAATATTTGTGGAAGGATTCATCAAAGCAA
tgcatgaaaaattgaaaaagaagagTGTGTCAAAACCTTACCACATAAAC
TTATTCAAGCTTTTTAACAAACAGTGTTTTGCAGACGAACATATAAATAA
TTGGAAGTTATTCCTAGCATTGGTAGGGAGTGATCTCGATCAAACAAGAA
TGCTTTTTAATTTCGTCACCTCAAAAATCCTTGAGAAGTTACTAAAGATA
AGAAGGGAGTTCTTTCTTCCTgatacaaacaacaaagagCAAACTATACT
TCCTCAGTCAGAGTCAGACGTCTCAGACTCTAAACCATTATTTAAATGTG
ACCTTTGTCAGAAAGAATACTTCAGAGAAAGGGGAATAAAGACACACAAA
AAAACATGCAAAGgATCAAAAGCACAGTCCTCAAAGAAGCCAACGGCAGC
AAGTGGAAAGCCCAAAAAACCTATTGcaccaaagaaaaaaacaccagcTG
TGTTGTTGAAGGAAAAATTCTTAAATTCGTCCGTCAACATATTGGAAACA
TCGTTAAAATATGCTGCTGATGACCCTTTCTTCATGATCAGAGAGCCTGG
CAAAAGTGCAGCATTGTTGGCTTCAAAACTCATTCCGCTATCAAGTAACA
AAAACGCCAAAATATTTGTGGAAGGATTCATCAAAGCAAtgcatgaaaaa
ttgaaaaagaagagTGTGTCAAAACCTTACCACATAAACTTATTCAAGCT
TTTTAACAAACAGTGTTTTGCAGACGAACATATAAATAATTGGAAGTTAT
TCCTAGCATTGGTAGGGAGTGATCTCGATCAAACAAGAATGCTTTTTAAT
TTCGTCACCTCAAAAATCCTTGAGAAGTTACTAAAGATAAGAAGGGAGTT
CTTTCTTCCTgatacaaacaacaaagag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042818-exon-sc0003705-1491911889:9093..9218 | TCONS_00042818-exon-sc0003705-1491911889:9093..9218 | Clytia hemisphaerica | exon |
| TCONS_00042818-exon-sc0003705-1510915933:9093..9218 | TCONS_00042818-exon-sc0003705-1510915933:9093..9218 | Clytia hemisphaerica | exon |
| TCONS_00042818-exon-sc0003705-1575043694:9093..9218 | TCONS_00042818-exon-sc0003705-1575043694:9093..9218 | Clytia hemisphaerica | exon |
| TCONS_00042818-exon-sc0003705-1491911889:9579..10093 | TCONS_00042818-exon-sc0003705-1491911889:9579..10093 | Clytia hemisphaerica | exon |
| TCONS_00042818-exon-sc0003705-1510915933:9579..10093 | TCONS_00042818-exon-sc0003705-1510915933:9579..10093 | Clytia hemisphaerica | exon |
| TCONS_00042818-exon-sc0003705-1575043694:9579..10093 | TCONS_00042818-exon-sc0003705-1575043694:9579..10093 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003705 | supercontig | sc0003705:9093..10093 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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