TCONS_00042813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042813
Unique NameTCONS_00042813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042813 ID=TCONS_00042813|Name=TCONS_00042813|organism=Clytia hemisphaerica|type=transcript|length=397bp
attaaattcccgccaaaatttcttcctttaaggtaatagTTTTTTGATAT
TATTAATATAcgattttaataataatttttaataattattaaacaatttt
tttgtcatttctttTGCCTTAGTTCTGTATTAGCTCATTTCAAACCATGC
CTATTAGGTTTCAAACAGTAAGGAAGTATCCTTGgagagtttttatttta
ttttaggcAAATTCAAAAGTGGTAGTGGCAAACACCTTGGTGGAGGAAGA
CAGTCAAGAAACCCAGTCATTGCATGAAGATGATGAAGAGATTCCTCTTA
CAGATGACGAAACTATGGCGGATAGACCAATAAAAAACTATTCATTATCA
GGTATGAGTGCTTCTTTTTGAGTAGCCAATGGCCATCCTattctgcc
Run BLAST on NCBI

transcript from alignment at sc0003701:5110..5881+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042813 ID=TCONS_00042813|Name=TCONS_00042813|organism=Clytia hemisphaerica|type=transcript|length=772bp|location=Sequence derived from alignment at sc0003701:5110..5881+ (Clytia hemisphaerica)
attaaattcccgccaaaatttcttcctttaaggtaatagTTTTTTGATAT
TATTAATATAcgattttaataataatttttaataattattaaacaatttt
tttgtcatttctttTGCCTTAGTTCTGTATTAGCTCATTTCAAACCATGC
CTATTAGGTTTCAAACAGTAAGGAAGTATCCTTGgagagtttttatttta
ttttaggcAAATTCAAAAGTGGTAGTGGCAAACACCTTGGTGGAGGAAGA
CAGTCAAGAAACCCAGTCATTGCATGAAGATGATGAAGAGATTCCTCTTA
CAGgtaatttcaagaaaaagttaAATAATTCTCCACTAAAATGTCTTGTT
TCCTGTGAACACCTTTTTCACATAGCTGAAATGGGTGCTGAATAGATTAT
TGATGAAGTAAAAGGCTTTGAAAATACTGGCGTTTGGTCATAGttcattt
ggattttgaaaaaataaaaatgtttcttgAATTTTGGATAAAATTTTGGC
AATGTTTTGCTATCATTGGGCTGAATTCGTCATGTatttcaaatttagat
tttcaaaatgcAAATGAAGGGTTTTGCCAGAATTTAATTTGCATTCTAGC
CCAAAGTGGATTTCATCCCTTAGAGGGGTTATATTATAAATCAAACACTC
CAAATAATTTAACGCTTTTTTTGTTTAGATGACGAAACTATGGCGGATAG
ACCAATAAAAAACTATTCATTATCAGGTATGAGTGCTTCTTTTTGAGTAG
CCAATGGCCATCCTattctgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026607XLOC_026607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042813-exon-sc0003701-1491911889:5110..5412TCONS_00042813-exon-sc0003701-1491911889:5110..5412Clytia hemisphaericaexon
TCONS_00042813-exon-sc0003701-1510915933:5110..5412TCONS_00042813-exon-sc0003701-1510915933:5110..5412Clytia hemisphaericaexon
TCONS_00042813-exon-sc0003701-1575043694:5110..5412TCONS_00042813-exon-sc0003701-1575043694:5110..5412Clytia hemisphaericaexon
TCONS_00042813-exon-sc0003701-1491911889:5788..5881TCONS_00042813-exon-sc0003701-1491911889:5788..5881Clytia hemisphaericaexon
TCONS_00042813-exon-sc0003701-1510915933:5788..5881TCONS_00042813-exon-sc0003701-1510915933:5788..5881Clytia hemisphaericaexon
TCONS_00042813-exon-sc0003701-1575043694:5788..5881TCONS_00042813-exon-sc0003701-1575043694:5788..5881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003701supercontigsc0003701:5110..5881 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26454	1.47219	0.427337	0.209115	0.254488	0	0.728205	2.04423	0.318144	0.197039	0	0.251406	0.502024	0.260714	0.321557	0.575196	2.6921	3.63065	0.200936	0	2.00739	0.801975	1.73146	0.196903	1.8235	1.62743	0	0	0.419101	0.42707
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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