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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042809 ID=TCONS_00042809|Name=TCONS_00042809|organism=Clytia hemisphaerica|type=transcript|length=1341bp
tagtgaaaaaaaaacaaacacaaatgaacaataatttgaaaaagatgACA
AAAGAGAATAAAAACACGCAAACAAAAAGTTTCATTTGCTTCACGTGTCG
ACAAACGGGCCATAAGAAAGCCGAATGTCCTTTGAAATCCAATAATACTT
GGTCAGCGGTTTCTGGGCCAACACCTAAAGCACAGAACCATGGTAATATT
AGAAGTAAAGCACCAGATTTTACATTTAAGGTTGAAAATGAACTGGAAAT
TGATATTGGGAATCGATGTTATGATGGGTATCTGAGAGATGACTTGTCTT
TAGTCGATTTGTTGAAAAACAGTCATGATAAGTTCTGTCAAAATAACGTA
GACTCTGGTGAAATTCCAATGTCAGATCGAGGTTACGATGGTTTGATCCA
CGATGATCCATCTCTGGACAAGGATTTACTGACGTACAATAACAATTTTT
ATGGTCATGAGAAATACTATAAAATGAATGCTATTGGAATCATTAACTCT
GGAGAAATCCTAAGTCAGAATATGTCAGAACGAAGTTATGATGGTTCTAT
CCAAGATGATCTATCACTGGCAAAAGGTTTGGTAATGAATAATAATAATG
ACTTTCAACGAAACTATGATGGTTTAATCCAAGATGACCCATCTTTGGCA
AACGAAATCTTAAGCAGTAACAACAAATATGAACCTATTCAAAACATGTT
CGTTGATCATGGTGGTATTAAAGTTGAAGAAGGTTCAAGAGAGGTGTTAC
AAGGTGAAGTTAATGTAAAGAAGGAACAAAACTTAGGTCAAACACTGATG
CAGTCATGGTATTGAAAGAATGGTAGTGCTTTTTGTCGTGTTTTGTCGGT
TATtacaaattaacattttcaagacCGATGAcacggatatatccgacatg
ggGTGTTAAGGGGCGAGGCCCTTCTGTAAAGCCCGTTTTGGAGTTGAGAT
TTTTTGGTCATCATTTATACGAAGAGTATTTTGGTTCGTATTTAGTGAAC
GAGCGAGTCAAAAGCCGCAAAATTTGGATCGTTTTTTTTAGATTCTCTCA
TCTAGTGAATTAATTTGAAGTCCCTtctagttctggagatataacGGTTT
AAAATTGGACCTTAGGCATGGTATGAACCCCCCCAGAgattaggggggac
ctaattttttttttaccatattctgGCTGGGGGctggcaaaatttaattt
tttaggggGTACCTATATTGTTGGGGGGACCTACAACTGCATGTGAAAGA
TCTGGGGGCTGGCTTTGTTTAAAATTGGGAGTAATCTTTTTCTGCTTTCA
ATCCACAGATTCATTGTTTTAGTCCAACTTTTATATCAAGA Run BLAST on NCBI protein sequence of TCONS_00042809-protein >TCONS_00042809-protein ID=TCONS_00042809-protein|Name=TCONS_00042809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
VKKKQTQMNNNLKKMTKENKNTQTKSFICFTCRQTGHKKAECPLKSNNTW
SAVSGPTPKAQNHGNIRSKAPDFTFKVENELEIDIGNRCYDGYLRDDLSL
VDLLKNSHDKFCQNNVDSGEIPMSDRGYDGLIHDDPSLDKDLLTYNNNFY
GHEKYYKMNAIGIINSGEILSQNMSERSYDGSIQDDLSLAKGLVMNNNND
FQRNYDGLIQDDPSLANEILSSNNKYEPIQNMFVDHGGIKVEEGSREVLQ
GEVNVKKEQNLGQTLMQSWY Run BLAST on NCBI transcript from alignment at sc0003697:513..1853 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042809 ID=TCONS_00042809|Name=TCONS_00042809|organism=Clytia hemisphaerica|type=transcript|length=1341bp|location=Sequence derived from alignment at sc0003697:513..1853 (Clytia hemisphaerica)
TCTTGATATAAAAGTTGGACTAAAACAATGAATCTGTGGATTGAAAGCAG
AAAAAGATTACTCCCAATTTTAAACAAAGCCAGCCCCCAGATCTTTCACA
TGCAGTTGTAGGTCCCCCCAACAATATAGGTACcccctaaaaaattaaat
tttgccagCCCCCAGCcagaatatggtaaaaaaaaaattaggtcccccct
aatcTCTGGGGGGGTTCATACCATGCCTAAGGTCCAATTTTAAACCgtta
tatctccagaactagaAGGGACTTCAAATTAATTCACTAGATGAGAGAAT
CTAAAAAAAACGATCCAAATTTTGCGGCTTTTGACTCGCTCGTTCACTAA
ATACGAACCAAAATACTCTTCGTATAAATGATGACCAAAAAATCTCAACT
CCAAAACGGGCTTTACAGAAGGGCCTCGCCCCTTAACACcccatgtcgga
tatatccgtgTCATCGgtcttgaaaatgttaatttgtaATAACCGACAAA
ACACGACAAAAAGCACTACCATTCTTTCAATACCATGACTGCATCAGTGT
TTGACCTAAGTTTTGTTCCTTCTTTACATTAACTTCACCTTGTAACACCT
CTCTTGAACCTTCTTCAACTTTAATACCACCATGATCAACGAACATGTTT
TGAATAGGTTCATATTTGTTGTTACTGCTTAAGATTTCGTTTGCCAAAGA
TGGGTCATCTTGGATTAAACCATCATAGTTTCGTTGAAAGTCATTATTAT
TATTCATTACCAAACCTTTTGCCAGTGATAGATCATCTTGGATAGAACCA
TCATAACTTCGTTCTGACATATTCTGACTTAGGATTTCTCCAGAGTTAAT
GATTCCAATAGCATTCATTTTATAGTATTTCTCATGACCATAAAAATTGT
TATTGTACGTCAGTAAATCCTTGTCCAGAGATGGATCATCGTGGATCAAA
CCATCGTAACCTCGATCTGACATTGGAATTTCACCAGAGTCTACGTTATT
TTGACAGAACTTATCATGACTGTTTTTCAACAAATCGACTAAAGACAAGT
CATCTCTCAGATACCCATCATAACATCGATTCCCAATATCAATTTCCAGT
TCATTTTCAACCTTAAATGTAAAATCTGGTGCTTTACTTCTAATATTACC
ATGGTTCTGTGCTTTAGGTGTTGGCCCAGAAACCGCTGACCAAGTATTAT
TGGATTTCAAAGGACATTCGGCTTTCTTATGGCCCGTTTGTCGACACGTG
AAGCAAATGAAACTTTTTGTTTGCGTGTTTTTATTCTCTTTTGTcatctt
tttcaaattattgttcatttgtgtttgtttttttttcacta Coding sequence (CDS) from alignment at sc0003697:513..1853 >TCONS_00042809 ID=TCONS_00042809|Name=TCONS_00042809|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at sc0003697:513..1853 (Clytia hemisphaerica)
TCAATACCATGACTGCATCAGTGTTTGACCTAAGTTTTGTTCCTTCTTTA
CATTAACTTCACCTTGTAACACCTCTCTTGAACCTTCTTCAACTTTAATA
CCACCATGATCAACGAACATGTTTTGAATAGGTTCATATTTGTTGTTACT
GCTTAAGATTTCGTTTGCCAAAGATGGGTCATCTTGGATTAAACCATCAT
AGTTTCGTTGAAAGTCATTATTATTATTCATTACCAAACCTTTTGCCAGT
GATAGATCATCTTGGATAGAACCATCATAACTTCGTTCTGACATATTCTG
ACTTAGGATTTCTCCAGAGTTAATGATTCCAATAGCATTCATTTTATAGT
ATTTCTCATGACCATAAAAATTGTTATTGTACGTCAGTAAATCCTTGTCC
AGAGATGGATCATCGTGGATCAAACCATCGTAACCTCGATCTGACATTGG
AATTTCACCAGAGTCTACGTTATTTTGACAGAACTTATCATGACTGTTTT
TCAACAAATCGACTAAAGACAAGTCATCTCTCAGATACCCATCATAACAT
CGATTCCCAATATCAATTTCCAGTTCATTTTCAACCTTAAATGTAAAATC
TGGTGCTTTACTTCTAATATTACCATGGTTCTGTGCTTTAGGTGTTGGCC
CAGAAACCGCTGACCAAGTATTATTGGATTTCAAAGGACATTCGGCTTTC
TTATGGCCCGTTTGTCGACACGTGAAGCAAATGAAACTTTTTGTTTGCGT
GTTTTTATTCTCTTTTGTcatctttttcaaattattgttcatttgtgttt
gtttttttttcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042809-exon-sc0003697-1491911889:513..1853 | TCONS_00042809-exon-sc0003697-1491911889:513..1853 | Clytia hemisphaerica | exon |
| TCONS_00042809-exon-sc0003697-1510915933:513..1853 | TCONS_00042809-exon-sc0003697-1510915933:513..1853 | Clytia hemisphaerica | exon |
| TCONS_00042809-exon-sc0003697-1575043694:513..1853 | TCONS_00042809-exon-sc0003697-1575043694:513..1853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003697 | supercontig | sc0003697:513..1853 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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