TCONS_00042806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042806
Unique NameTCONS_00042806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042806 ID=TCONS_00042806|Name=TCONS_00042806|organism=Clytia hemisphaerica|type=transcript|length=585bp
GGTTGATGTCAAAGTTTCAAAACCATATACAAACACGTCTTTAAGGTCTT
GTTATAATTGAATTGTTAAACCTTTAAGTGAAAACTTTGTCAGTGATGTT
TTTAATACATGTTATTAATGAGCATATAGCAAGCATGTCCAGGGGCTTAA
ATCTTACCAAAAATTAAATAGTTCCTAAAGATATACTaagcatgtttctt
agtttttaggcattctgagcctcatgtttcttaaaaaaaacgcaTAGCGT
TTGTACCTACTATCATTAACTCTTGTTTATCGTAATAGCCCTTCCAGGGG
CTCAAATCTTACCAAAAATTAAACAGTATCTAAAGATATGGTAAGGCCTC
ATCAGTTAACAAAATAATTAAAGGGAAGCAAACCAATGCACCAAcagaag
aaaaaaggaaagattAATCACACAACAATTATATTTTCTGGAACTAATAA
CCATACTTAGAAAAATATTAgaagaatatcaaaataattatttgaaaaag
ttatttttcaaaaattacaaagaaacacttgaaatcaaacaaaagaaaat
tgacaaaattattgTGTAAGTTAAATTGAAATCGG
Run BLAST on NCBI

transcript from alignment at sc0003692:1..585

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042806 ID=TCONS_00042806|Name=TCONS_00042806|organism=Clytia hemisphaerica|type=transcript|length=585bp|location=Sequence derived from alignment at sc0003692:1..585 (Clytia hemisphaerica)
CCGATTTCAATTTAACTTACAcaataattttgtcaattttcttttgtttg
atttcaagtgtttctttgtaatttttgaaaaataactttttcaaataatt
attttgatattcttcTAATATTTTTCTAAGTATGGTTATTAGTTCCAGAA
AATATAATTGTTGTGTGATTaatctttccttttttcttctgTTGGTGCAT
TGGTTTGCTTCCCTTTAATTATTTTGTTAACTGATGAGGCCTTACCATAT
CTTTAGATACTGTTTAATTTTTGGTAAGATTTGAGCCCCTGGAAGGGCTA
TTACGATAAACAAGAGTTAATGATAGTAGGTACAAACGCTAtgcgttttt
tttaagaaacatgaggctcagaatgcctaaaaactaagaaacatgcttAG
TATATCTTTAGGAACTATTTAATTTTTGGTAAGATTTAAGCCCCTGGACA
TGCTTGCTATATGCTCATTAATAACATGTATTAAAAACATCACTGACAAA
GTTTTCACTTAAAGGTTTAACAATTCAATTATAACAAGACCTTAAAGACG
TGTTTGTATATGGTTTTGAAACTTTGACATCAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026600XLOC_026600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042806-exon-sc0003692-1491911889:1..585TCONS_00042806-exon-sc0003692-1491911889:1..585Clytia hemisphaericaexon
TCONS_00042806-exon-sc0003692-1510915933:1..585TCONS_00042806-exon-sc0003692-1510915933:1..585Clytia hemisphaericaexon
TCONS_00042806-exon-sc0003692-1575043694:1..585TCONS_00042806-exon-sc0003692-1575043694:1..585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003692supercontigsc0003692:1..585 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.87134	4.24326	5.58514	5.92887	1.40051	0.67923	2.32752	1.1512	40.7047	26.925	40.6402	45.497	0	0	0	0.0575757	0.0708659	0.18362	0	0	0.0932725	0.475202	0.836038	1.17835	1.52198	1.05834	3.42298	3.93807	0	0.423458
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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