TCONS_00042802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042802
Unique NameTCONS_00042802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042802 ID=TCONS_00042802|Name=TCONS_00042802|organism=Clytia hemisphaerica|type=transcript|length=402bp
gttgatAAAAGTTTAGAGAGAAGAGATTCTTGAGTCTAATTGGAGAAAAG
CCACATAAGATCCTATGAGCAAGAGTTATATTTACTAGATTAATGTGATc
agaaattttaagaagattaaGTTCATAAAAGATTTTACTAGAGTGAGCat
tgaaatcagaaaaagtCATGATTCGTAAGCATCGTTTTTGAAGTTTAAAG
ACTCTTTCCACATTATAGTTATGTTTTTGACCCCAGATTTGGCAAGCATA
ATAAAGATGCGAAAAAAATAGAGCATAATAAATCTGAAGTATTGTAGATA
GAGGAACAAAATGTCTGAGTTTAGAAATTATTCCATTGGCACTACTTAAT
TTAGAGCATAGATCGTTAGTGTTTATTCtccaatttaaaaagtgatcaaG
AG
Run BLAST on NCBI

transcript from alignment at sc0003684:5950..6351

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042802 ID=TCONS_00042802|Name=TCONS_00042802|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at sc0003684:5950..6351 (Clytia hemisphaerica)
CTCttgatcactttttaaattggaGAATAAACACTAACGATCTATGCTCT
AAATTAAGTAGTGCCAATGGAATAATTTCTAAACTCAGACATTTTGTTCC
TCTATCTACAATACTTCAGATTTATTATGCTCTATTTTTTTCGCATCTTT
ATTATGCTTGCCAAATCTGGGGTCAAAAACATAACTATAATGTGGAAAGA
GTCTTTAAACTTCAAAAACGATGCTTACGAATCATGactttttctgattt
caatGCTCACTCTAGTAAAATCTTTTATGAACttaatcttcttaaaattt
ctgATCACATTAATCTAGTAAATATAACTCTTGCTCATAGGATCTTATGT
GGCTTTTCTCCAATTAGACTCAAGAATCTCTTCTCTCTAAACTTTTatca
ac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026596XLOC_026596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042802-exon-sc0003684-1491911889:5950..6351TCONS_00042802-exon-sc0003684-1491911889:5950..6351Clytia hemisphaericaexon
TCONS_00042802-exon-sc0003684-1510915933:5950..6351TCONS_00042802-exon-sc0003684-1510915933:5950..6351Clytia hemisphaericaexon
TCONS_00042802-exon-sc0003684-1575043694:5950..6351TCONS_00042802-exon-sc0003684-1575043694:5950..6351Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003684supercontigsc0003684:5950..6351 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.7228	0.40782	2.76418	1.72027	1.63588	0.58767	1.65433	0.795024	0.309807	0.191873	0	0.377958	0.366764	0	0.472975	0.487251	0.169289	0.173449	0.586222	0.613439	0.614667	1.38378	1.15076	0.99844	0.394724	0.176141	2.40325	1.70468	1.56859	1.79075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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