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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042798 ID=TCONS_00042798|Name=TCONS_00042798|organism=Clytia hemisphaerica|type=transcript|length=1477bp
TCCATGATGTAATTTCAGAAGACAATgcagtgttgcatatcatgaattaa
gtTGCTCTGCTAGATATTTAGAAACCATGTTTTCCTTACCGCAGGCGGGA
AAAACAAGAAACAGCTGGCTGGTTTACGAGCAGAATGTGACCCTGACTTA
TACATGGAAGTTATCGAAGCTCTTCCCTTGGCGAATACTCCTGACGTTTT
TGGTTTACATCCAAATGCTGAAATTGGATACAGCACAACAGCTGCCAAAG
ACATGTGGACACAACTCGTTGAATTACAACCGCAAACAGGTGGAGACAGT
GGTGGTAAAAGTCGTGAAGAATTTATTGGTAAGATTGCTGCAGACATCCA
AGAGAAGTTACCAACACTTTATGACGTGAATGGTTTCAGAAagaaattag
gattagagatatcaCCAACGACTGTGGTCTTATTACAAGAGTTAGATGTG
TTGATCAGGAAAATGGGCACCACCCTGATGAACCTACAAAGGGTAAGTGT
TTTGTTTTAGATTGAAAAAGTCTATATTTTACGGCCATGTCGATATCTGT
GGGTTGTTCTCTTAGGCCCCGTCACTTTAAACCTAACAAAACACTAAAGA
ATTGAAAATAAGCGTGGTTTgaactattcatgatatgcaccattgcgatg
tcttctgacattacattacGGAGCCAcaaaagctgattggttgtgGGTGA
CTTAGAAttagtcaatacgtcacttgcaaccaatcagctgttgggtctgt
tgattgcaatggtgcatatcatgaataggggTATGTGGGTTGTAGCGCTG
ACGCAAATNgcaatggtgcatatcatgaataggggTATGTGGGTTGTAGC
GCtgacgcaaattttttttccgtcagcggaCGTAGACTTGATTTAGCGGC
CGTAGACCTGAATTAACGaccgaagacctgaattaaacGGTCGAAGACCT
GGATCAACGACTTTAGATAGGCATGAATACCATTTACTTTATTATCTTTA
TAATTGTAATGTTTGATCTAAAATATAAGAAGCAAATATAGTACATCCAA
TACCAggggcggtgcgacacccctgcaaaacatgcactcgcagggtatgc
tccggagtcatttttgtcgcagcttgtttttagcCTACCCGGAGTTGTTT
TTCCGGATCATTCGTTAGtgtcattagatttattttactgacttaaagtc
cgcggtaaatataagaaaactgttTATCAAGTCGCGCTACAGGAAGCGTG
AATTCCAGTCttcattttagattttgtgCACAAAACGTTTTGCAGCCCCT
GCcccctgcaaaattttgcagaaagacctggatgaggtcaaaatgcaggg
tttgcccgggatttgatggctgttagtgacaaaacgttaaaagtcaagac
tcgtcaaatggctttagatgcttggagaagaaaaaacagaatagacagtc
ctggttttatctattttgtcgcaaatt Run BLAST on NCBI transcript from alignment at sc0003684:9651..11700+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042798 ID=TCONS_00042798|Name=TCONS_00042798|organism=Clytia hemisphaerica|type=transcript|length=2050bp|location=Sequence derived from alignment at sc0003684:9651..11700+ (Clytia hemisphaerica)
TCCATGATGTAATTTCAGAAGACAATgcagtgttgcatatcatgaattaa
gtTGCTCTGCTAGATATTTAGAAACCATGTTTTCCTTACCGCAGGCGGGA
AAAACAAGAAACAGCTGGCTGGTTTACGAGCAGAATGTGACCCTGACTTA
TACATGGAAGTTATCGAAGCTCTTCCCTTGGCGAATACTCCTGACGTTTT
TGGTTTACATCCAAATGCTGAAATTGGATACAGCACAACAGCTGCCAAAG
GTTTGTTCCTTtcacacaatgttgtttcaatcttaataatttttttcccg
cCGCTATTAAAAAATGTGCAAAGGTGACAGATTTCTAAATATAGAATAGA
GCCTGAGTAATCTTTGATAACAATAATTCGTCTCTCTCCAATCGAAATTT
AAAGAATTGAGTAAATGAAATCGTGAGGTGTTTGGTGGTTGAGAAATTGT
TTCGAGCTTTACAATTGTTCAATAGCAACTTTGAGTAAGTAATGTCGAGT
AAAAGAGTCAAAAAGTAGGTAATCATGGAAGTTCCGTGGTctgatacaca
ttttttttatataaacaaACTATATGAGAACACCAGGCCTCGATATTCAA
TATATTAAGAACATTTTAAGGCTTTACGCACTCTAAAACGCCAAATATCT
TAGAAAATTACAGAAAAATACGCCCAAAATGAATGGTGAAAACTTAAGAA
GGGTTGAAATTAAGCTTGAAATTCAAAGTTAAAAAGTTAAGAACGTTGGA
AGGCTTCAAAAAATTTGAATGCTCTTATAAAGAAATGTATATTCACTATC
TACCCATCCTTTTCTCTTTCCAGACATGTGGACACAACTCGTTGAATTAC
AACCGCAAACAGGTGGAGACAGTGGTGGTAAAAGTCGTGAAGAATTTATT
GGTAAGATTGCTGCAGACATCCAAGAGAAGTTACCAACACTTTATGACGT
GAATGGTTTCAGAAagaaattaggattagagatatcaCCAACGACTGTGG
TCTTATTACAAGAGTTAGATGTGTTGATCAGGAAAATGGGCACCACCCTG
ATGAACCTACAAAGGGTAAGTGTTTTGTTTTAGATTGAAAAAGTCTATAT
TTTACGGCCATGTCGATATCTGTGGGTTGTTCTCTTAGGCCCCGTCACTT
TAAACCTAACAAAACACTAAAGAATTGAAAATAAGCGTGGTTTgaactat
tcatgatatgcaccattgcgatgtcttctgacattacattacGGAGCCAc
aaaagctgattggttgtgGGTGACTTAGAAttagtcaatacgtcacttgc
aaccaatcagctgttgggtctgttgattgcaatggtgcatatcatgaata
ggggTATGTGGGTTGTAGCGCTGACGCAAATNgcaatggtgcatatcatg
aataggggTATGTGGGTTGTAGCGCtgacgcaaattttttttccgtcagc
ggaCGTAGACTTGATTTAGCGGCCGTAGACCTGAATTAACGaccgaagac
ctgaattaaacGGTCGAAGACCTGGATCAACGACTTTAGATAGGCATGAA
TACCATTTACTTTATTATCTTTATAATTGTAATGTTTGATCTAAAATATA
AGAAGCAAATATAGTACATCCAATACCAggggcggtgcgacacccctgca
aaacatgcactcgcagggtatgctccggagtcatttttgtcgcagcttgt
ttttagcCTACCCGGAGTTGTTTTTCCGGATCATTCGTTAGtgtcattag
atttattttactgacttaaagtccgcggtaaatataagaaaactgttTAT
CAAGTCGCGCTACAGGAAGCGTGAATTCCAGTCttcattttagattttgt
gCACAAAACGTTTTGCAGCCCCTGCcccctgcaaaattttgcagaaagac
ctggatgaggtcaaaatgcagggtttgcccgggatttgatggctgttagt
gacaaaacgttaaaagtcaagactcgtcaaatggctttagatgcttggag
aagaaaaaacagaatagacagtcctggttttatctattttgtcgcaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042798-exon-sc0003684-1491911889:9651..9900 | TCONS_00042798-exon-sc0003684-1491911889:9651..9900 | Clytia hemisphaerica | exon |
| TCONS_00042798-exon-sc0003684-1510915933:9651..9900 | TCONS_00042798-exon-sc0003684-1510915933:9651..9900 | Clytia hemisphaerica | exon |
| TCONS_00042798-exon-sc0003684-1575043694:9651..9900 | TCONS_00042798-exon-sc0003684-1575043694:9651..9900 | Clytia hemisphaerica | exon |
| TCONS_00042798-exon-sc0003684-1491911889:10474..11700 | TCONS_00042798-exon-sc0003684-1491911889:10474..11700 | Clytia hemisphaerica | exon |
| TCONS_00042798-exon-sc0003684-1510915933:10474..11700 | TCONS_00042798-exon-sc0003684-1510915933:10474..11700 | Clytia hemisphaerica | exon |
| TCONS_00042798-exon-sc0003684-1575043694:10474..11700 | TCONS_00042798-exon-sc0003684-1575043694:10474..11700 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003684 | supercontig | sc0003684:9651..11700 + |
Blast
BLAST of TCONS_00042798 vs. Swiss-Prot (Human)
Match: DYH10 (Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4) HSP 1 Score: 145.976 bits (367), Expect = 1.573e-36 Identity = 68/117 (58.12%), Postives = 92/117 (78.63%), Query Frame = 1
Query: 151 YMEVIEALPLANTPDVFGLHPNAEIGYSTTAAKDMWTQLVELQPQTGGDSGGKSREEFIGKIAADIQEKLPTLYDVNGFRKKLGLEISPTTVVLLQELDV---LIRKMGTTLMNLQR 492
++E IEALPLANTP+VFGLHPNAEIGY T AA+DMW L+ELQPQTG S G SR+++IG++A +I+ K+P ++D++ RK+LG +SPT+VVLLQEL+ L+ +M +L LQR
Sbjct: 4142 FVEAIEALPLANTPEVFGLHPNAEIGYYTQAARDMWAHLLELQPQTGESSSGISRDDYIGQVAKEIENKMPKVFDLDQVRKRLGTGLSPTSVVLLQELERFNKLVVRMTKSLAELQR 4258
The following BLAST results are available for this feature:
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