TCONS_00042797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042797
Unique NameTCONS_00042797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1156

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042797 ID=TCONS_00042797|Name=TCONS_00042797|organism=Clytia hemisphaerica|type=transcript|length=1156bp
ACCAGGTGCTAACAtcttaatatctttttaaacaATCAAAGATAATACGC
AACTAATCCCACAGTACTTCCCGGTCGTTTAATACgattatttcatctat
gaataatcgaacaatatgcgaaattttcgactctggGTCGTCTTGTTTGT
TGTTAATTCTATACAACCTCAAGTCGAAGATAGAGAAGACCTTTCGTCAT
TATTAAGTTCTTTTAAGTTAATCAGTTTGTCAATGAAAATTAAGGCTTCG
TGTGGTGTGATTTCCTCCGGGTCAATTTCTTGAACCTCATCTTCACTTTC
CAGGCGGGAAAAACAAGAAACAGCTGGCTGGTTTACGAGCAGAATGTGAC
CCTGACTTATACATGGAAGTTATCGAAGCTCTTCCCTTGGCGAATACTCC
TGACGTTTTTGGTTTACATCCAAATGCTGAAATTGGATACAGCACAACAG
CTGCCAAAGACATGTGGACACAACTCGTTGAATTACAACCGCAAACAGGT
GGAGACAGTGGTGGTAAAAGTCGTGAAGAATTTATTGGTAAGATTGCTGC
AGACATCCAAGAGAAGTTACCAACACTTTATGACGTGAATGGTTTCAGAA
agaaattaggattagagatatcaCCAACGACTGTGGTCTTATTACAAGAG
TTAGATGTGTTGATCAGGAAAATGGGCACCACCCTGATGAACCTACAAAG
GGCACTAGCCGGTGAAGTTGGTATggacaatgggcttttccagaaaaaaa
ccgtataccccctgttgaggaggtccatttccgttccaagggggtaaggt
ttgatatgtgccGGAATTCCATAGAGATacaaaaaactgtcaaaaattac
tggaattccatgggggtagccttttaaatcctactaaaattcagaattcc
agagggagggtaaacctgaaattgcctggaattccagagggttacagcat
ttccagccacaaaatgatggacctcctcaacaggggtatacggttttttt
ctggaaaagcccaatgagcTAGACGATGTCGCTCGTGCTCTTTTCAACGG
ACAAATTCCACCGAGTTGGCGAAAACTTGCTCCTGCGACGCTCAAAAATT
TGGGTGGTTGGATGGAACATTTTATGCGAAGAAATGAACAATATACTTCA
TGGGNN
Run BLAST on NCBI

protein sequence of TCONS_00042797-protein

>TCONS_00042797-protein ID=TCONS_00042797-protein|Name=TCONS_00042797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MEVIEALPLANTPDVFGLHPNAEIGYSTTAAKDMWTQLVELQPQTGGDSG
GKSREEFIGKIAADIQEKLPTLYDVNGFRKKLGLEISPTTVVLLQELDVL
IRKMGTTLMNLQRALAGEVGMDNGLFQKKTVYPLLRRSISVPRG
Run BLAST on NCBI

transcript from alignment at sc0003684:8608..17284+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042797 ID=TCONS_00042797|Name=TCONS_00042797|organism=Clytia hemisphaerica|type=transcript|length=8677bp|location=Sequence derived from alignment at sc0003684:8608..17284+ (Clytia hemisphaerica)
ACCAGGTGCTAACAtcttaatatctttttaaacaATCAAAGATAATACGC
AACTAATCCCACAGTACTTCCCGGTCGTTTAATACgattatttcatctat
gaataatcgaacaatatgcgaaattttcgactctggGTCGTCTTGTTTGT
TGTTAATTCTATACAACCTCAAGTCGAAGATAGAGAAGACCTTTCGTCAT
TATTAAGTTCTTTTAAGTTAATCAGTTTGTCAATGAAAATTAAGGCTTCG
TGTGGTGTGATTTCCTCCGGGTCAATTTCTTGAACCTCATCTTCACTTTC
CAGGTCAGATTTTGGGTTTTCTTCATTTCCAGATTCTTTATTCAAATACT
CGCTAACACATTTACTCGCGGAGCTTACTCTCCAGTCAAATGAAATAACT
GGCAATAGAACAGGGGAGGTGGCTATGGACTTGAAGTGCCAGTCATTTAC
TATTTTACTGGCCCAGGAAAGCTTGTCAACTGGGTAAAGGAAAAACtgaa
ttaaaagcaaaatttggaagaaaaaaaacaaaaaatgcttgaaataaATG
GTTTAAAATCACTTATTACTTGTATCTTAATGTCGGAAACTATGTTTTCC
tcggtgtccgctaattggagggggaaaaacaggtttttgaccATTCCGTG
CAAAAATTTGTGTCCGCTAAATTGAGGTGTCTGCTAATTGAGTGTTcgcc
ttttggaaacttttttataaggatttgacaaggaaacggccggggaaaaa
tattttgtccgctaatcagaggtgtccgccttttagagtgtccgctaatt
ggagattCTACTGTAGTTATTTTATACAAACTGATGTTATCCCTTTTCAA
CTATCGTATTATCATGTAACACCCATTTACTGTATTCCacggattataaa
cgactcctgTTTCGTCACGTTTTGTAAATTGATTTATTCtagttattcat
gatatgcaccattgcaatgtcttccatagaccgaacagctgattggttga
aagtgacgtattgactgattttacgtcacaaTCAGCTGTTAGGTCCATGA
TGTAATTTCAGAAGACAATgcagtgttgcatatcatgaattaagtTGCTC
TGCTAGATATTTAGAAACCATGTTTTCCTTACCGCAGGCGGGAAAAACAA
GAAACAGCTGGCTGGTTTACGAGCAGAATGTGACCCTGACTTATACATGG
AAGTTATCGAAGCTCTTCCCTTGGCGAATACTCCTGACGTTTTTGGTTTA
CATCCAAATGCTGAAATTGGATACAGCACAACAGCTGCCAAAGGTTTGTT
CCTTtcacacaatgttgtttcaatcttaataatttttttcccgcCGCTAT
TAAAAAATGTGCAAAGGTGACAGATTTCTAAATATAGAATAGAGCCTGAG
TAATCTTTGATAACAATAATTCGTCTCTCTCCAATCGAAATTTAAAGAAT
TGAGTAAATGAAATCGTGAGGTGTTTGGTGGTTGAGAAATTGTTTCGAGC
TTTACAATTGTTCAATAGCAACTTTGAGTAAGTAATGTCGAGTAAAAGAG
TCAAAAAGTAGGTAATCATGGAAGTTCCGTGGTctgatacacattttttt
tatataaacaaACTATATGAGAACACCAGGCCTCGATATTCAATATATTA
AGAACATTTTAAGGCTTTACGCACTCTAAAACGCCAAATATCTTAGAAAA
TTACAGAAAAATACGCCCAAAATGAATGGTGAAAACTTAAGAAGGGTTGA
AATTAAGCTTGAAATTCAAAGTTAAAAAGTTAAGAACGTTGGAAGGCTTC
AAAAAATTTGAATGCTCTTATAAAGAAATGTATATTCACTATCTACCCAT
CCTTTTCTCTTTCCAGACATGTGGACACAACTCGTTGAATTACAACCGCA
AACAGGTGGAGACAGTGGTGGTAAAAGTCGTGAAGAATTTATTGGTAAGA
TTGCTGCAGACATCCAAGAGAAGTTACCAACACTTTATGACGTGAATGGT
TTCAGAAagaaattaggattagagatatcaCCAACGACTGTGGTCTTATT
ACAAGAGTTAGATGTGTTGATCAGGAAAATGGGCACCACCCTGATGAACC
TACAAAGGGTAAGTGTTTTGTTTTAGATTGAAAAAGTCTATATTTTACGG
CCATGTCGATATCTGTGGGTTGTTCTCTTAGGCCCCGTCACTTTAAACCT
AACAAAACACTAAAGAATTGAAAATAAGCGTGGTTTgaactattcatgat
atgcaccattgcgatgtcttctgacattacattacGGAGCCAcaaaagct
gattggttgtgGGTGACTTAGAAttagtcaatacgtcacttgcaaccaat
cagctgttgggtctgttgattgcaatggtgcatatcatgaataggggTAT
GTGGGTTGTAGCGCTGACGCAAATNgcaatggtgcatatcatgaataggg
gTATGTGGGTTGTAGCGCtgacgcaaattttttttccgtcagcggaCGTA
GACTTGATTTAGCGGCCGTAGACCTGAATTAACGaccgaagacctgaatt
aaacGGTCGAAGACCTGGATCAACGACTTTAGATAGGCATGAATACCATT
TACTTTATTATCTTTATAATTGTAATGTTTGATCTAAAATATAAGAAGCA
AATATAGTACATCCAATACCAggggcggtgcgacacccctgcaaaacatg
cactcgcagggtatgctccggagtcatttttgtcgcagcttgtttttagc
CTACCCGGAGTTGTTTTTCCGGATCATTCGTTAGtgtcattagatttatt
ttactgacttaaagtccgcggtaaatataagaaaactgttTATCAAGTCG
CGCTACAGGAAGCGTGAATTCCAGTCttcattttagattttgtgCACAAA
ACGTTTTGCAGCCCCTGCcccctgcaaaattttgcagaaagacctggatg
aggtcaaaatgcagggtttgcccgggatttgatggctgttagtgacaaaa
cgttaaaagtcaagactcgtcaaatggctttagatgcttggagaagaaaa
aacagaatagacagtcctggttttatctattttgtcgcaaattctgaANN
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NNNNNATTGGGCATAAAAAggtggctgttttagccaatctagagggtcga
aattcaaaaattttctggcccgtcgggcccaaccatggtgggccctcctt
agacactatacatagctgaatcactatatatagctgaaccTTTTTTGCAG
AGTATCCTAAAAATCCTAGATACGCCCCTGAATACCTAACTAAATATAAC
TCTCTATCTCCCTCCCCCCTGAAAGTCCAAAACAAAAAGCTATATAGGGC
ATGTACCCATAAAATATACACATTAATGTCCGTCTAAAGTGATGAAGAGA
ACATGGTCTCAAGTCTATATACATTTATACATGTTTGCGTAGGGTTAGGG
TATCGTAGTTCGCCCAATGAATGCCCAATATAAAGCAACATATCAACAGC
TCTGAGAAATGTCGAGCAGGGTATCTTGATAGTTCGCCCTGTGATGACAT
CATTATGTGTCATAGAGTCATGAAAGTATATAACCATGACGTTTGGGGAA
AGATGAACAGGGTATCTTAATAGTTCGCCCTGTGATTAATAATATGTAAA
TCGTACTATACAGTTCAAGTACTCATTTCAGCTCATAGTCGCTCAAGTGT
CCAGGGACCTTTTTAATACGTTGAGATCTCCTGGGTTCTTGCGTTGAGCT
TTGAGCTTTTTGACCAGAGCGTGGAGGAGCATTGTATGTTGTAACTCCTG
ATGGTGAGCCATAAGATACGGACGGTGTTGATTGAGCAGGCTTTGTTGAT
TGTTGGACGACTGGTGTAGTTGGTTGAAGATCTGACCGTTGGATACGTGG
TGGTATAACTTCCTTCATTGGTGGTGCAGATGATGTTTGATGTTCGTCGT
TCTTCACCGCCACAGGGGCAGCAGTTTTGTCCAGTCCCAAATGTGAGGGA
TGATTGAGAGGGACTGGACGAGTTTGTGATGGAGATGGAATTATGGGATG
AGTTGTGAACGGCTGTGGTATGAGAGGTGTAAAATGAGATGGGATTTGGA
GGGAAGTGTCCTGGGGCATGACAGGGGTGAAGCGCCTCAGAAACTTCCTG
TTGCGGAGAGTGACTCTCCCTGATCCATCCACTTTGACAGCGTATTGGTC
GAACTGCCTCACTTCAATGATTGTGCCGGTCCTATCCCATTTGCGGGGGC
TCTTGCCAACTTGATTCTGGATACGCACATGATCTCCAACCTTCAGTGGT
GGTAGAGGACGGGTCCCGATGGCGAGGCGTTCAGCGATCTTGAGATGACG
GTGTCGGAGGGCTTCTTCTCGCCTTTGGAGGGAGTCTTGCCAGGTTGGAT
GCGGACGATACTTTCCAGGTAGGATAGGTACAGGCGATCGAGTAGGATGG
CCAAAGATACATGTAGCAGGTGAGATGCGTGTGTCTGGCTGTGGTGTGTT
TCTGTAGACGAGCATAGCTTTTTGGAAAGCGTCAGTGTCGAGGTTCCCAT
TGGCATCTGTGTTGCCCACAATCATGCGCTTCACGGTCTTGACACCAATT
TCAGCACGGCTGTTGCTGTGAGGGAAGGCTGTTGACGATATACGTTGTCT
GACTCCCCACGATTTAAGGAAGGATTCTGTAGATCTTGAGGTGAATTCCG
GGCCGCCATCAGATGCAAGCTCCTCAGGGATACCGTAGGTAACAAACGAG
CGATGTAGGCTATCAATCAAACCGCTGCTTCCATCTCTTGCACGGTCTAC
GATGGGCCAGTTTGAGTAGCGATCAACGGATACAAGATAGTATTTNCTTC
GCTTGTGCCGGCTGATGAGATTGTTGGCCTCTTGACTCTCTCCACTTTAG
CAGCACTCTGTTGATTGGGTGAGCCGGTGTGGGTAGCCGTGATGAGGGTT
GCAACAATCGTGGCATCTAGGTCAGGGGTGACGTAATCACAAGATTCGAT
TGGGCATACAGCAGGCATCTTTGTTGAGCAACCAAATGATATCAATTCAA
AAGATCAAACATAGATAGGCATGAATACCATTTACTTTATTATCTTTATA
ATTGTAATGTTTGATCTAAAATATAAGAAGCAAANCATTTACTTTATTAT
CTTTATAATTGTAATGTTTGATCTAAAATATAAGAAGCAAAATCTTACAT
CCAATACCTAACTAAATATAACTCTCTAGACTAGACGCCTTAAATTACTT
GGCCATTGCTTACGGGCTTAAAGATATCTTTGTTTTAATGACTGTATTTT
CGTTATAGTAGATTGCCCGAAATATCAAAGATTATATAACTATAAAGTTT
TATCAATCTCATAATATTTTAGGCACTAGCCGGTGAAGTTGGTATggaca
atgggcttttccagaaaaaaaccgtataccccctgttgaggaggtccatt
tccgttccaagggggtaaggtttgatatgtgccGGAATTCCATAGAGATa
caaaaaactgtcaaaaattactggaattccatgggggtagccttttaaat
cctactaaaattcagaattccagagggagggtaaacctgaaattgcctgg
aattccagagggttacagcatttccagccacaaaatgatggacctcctca
acaggggtatacggtttttttctggaaaagcccaatgagcTAGACGATGT
CGCTCGTGCTCTTTTCAACGGACAAATTCCACCGAGTTGGCGAAAACTTG
CTCCTGCGACGCTCAAAAATTTGGGTGGTTGGATGGAACATTTTATGCGA
AGAAATGAACAATATACTTCATGGGNN

Coding sequence (CDS) from alignment at sc0003684:8608..17284+

>TCONS_00042797 ID=TCONS_00042797|Name=TCONS_00042797|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at sc0003684:8608..17284+ (Clytia hemisphaerica)
ATGGAAGTTATCGAAGCTCTTCCCTTGGCGAATACTCCTGACGTTTTTGG
TTTACATCCAAATGCTGAAATTGGATACAGCACAACAGCTGCCAAAGACA
TGTGGACACAACTCGTTGAATTACAACCGCAAACAGGTGGAGACAGTGGT
GGTAAAAGTCGTGAAGAATTTATTGGTAAGATTGCTGCAGACATCCAAGA
GAAGTTACCAACACTTTATGACGTGAATGGTTTCAGAAagaaattaggat
tagagatatcaCCAACGACTGTGGTCTTATTACAAGAGTTAGATGTGTTG
ATCAGGAAAATGGGCACCACCCTGATGAACCTACAAAGGGCACTAGCCGG
TGAAGTTGGTATggacaatgggcttttccagaaaaaaaccgtataccccc
tgttgaggaggtccatttccgttccaagggggtaaATGGAAGTTATCGAA
GCTCTTCCCTTGGCGAATACTCCTGACGTTTTTGGTTTACATCCAAATGC
TGAAATTGGATACAGCACAACAGCTGCCAAAGACATGTGGACACAACTCG
TTGAATTACAACCGCAAACAGGTGGAGACAGTGGTGGTAAAAGTCGTGAA
GAATTTATTGGTAAGATTGCTGCAGACATCCAAGAGAAGTTACCAACACT
TTATGACGTGAATGGTTTCAGAAagaaattaggattagagatatcaCCAA
CGACTGTGGTCTTATTACAAGAGTTAGATGTGTTGATCAGGAAAATGGGC
ACCACCCTGATGAACCTACAAAGGGCACTAGCCGGTGAAGTTGGTATgga
caatgggcttttccagaaaaaaaccgtataccccctgttgaggaggtcca
tttccgttccaagggggtaaATGGAAGTTATCGAAGCTCTTCCCTTGGCG
AATACTCCTGACGTTTTTGGTTTACATCCAAATGCTGAAATTGGATACAG
CACAACAGCTGCCAAAGACATGTGGACACAACTCGTTGAATTACAACCGC
AAACAGGTGGAGACAGTGGTGGTAAAAGTCGTGAAGAATTTATTGGTAAG
ATTGCTGCAGACATCCAAGAGAAGTTACCAACACTTTATGACGTGAATGG
TTTCAGAAagaaattaggattagagatatcaCCAACGACTGTGGTCTTAT
TACAAGAGTTAGATGTGTTGATCAGGAAAATGGGCACCACCCTGATGAAC
CTACAAAGGGCACTAGCCGGTGAAGTTGGTATggacaatgggcttttcca
gaaaaaaaccgtataccccctgttgaggaggtccatttccgttccaaggg
ggtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026595XLOC_026595Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042797-proteinTCONS_00042797-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042797-exon-sc0003684-1491911889:8608..8910TCONS_00042797-exon-sc0003684-1491911889:8608..8910Clytia hemisphaericaexon
TCONS_00042797-exon-sc0003684-1510915933:8608..8910TCONS_00042797-exon-sc0003684-1510915933:8608..8910Clytia hemisphaericaexon
TCONS_00042797-exon-sc0003684-1575043694:8608..8910TCONS_00042797-exon-sc0003684-1575043694:8608..8910Clytia hemisphaericaexon
TCONS_00042797-exon-sc0003684-1491911889:9745..9900TCONS_00042797-exon-sc0003684-1491911889:9745..9900Clytia hemisphaericaexon
TCONS_00042797-exon-sc0003684-1510915933:9745..9900TCONS_00042797-exon-sc0003684-1510915933:9745..9900Clytia hemisphaericaexon
TCONS_00042797-exon-sc0003684-1575043694:9745..9900TCONS_00042797-exon-sc0003684-1575043694:9745..9900Clytia hemisphaericaexon
TCONS_00042797-exon-sc0003684-1491911889:10474..10715TCONS_00042797-exon-sc0003684-1491911889:10474..10715Clytia hemisphaericaexon
TCONS_00042797-exon-sc0003684-1510915933:10474..10715TCONS_00042797-exon-sc0003684-1510915933:10474..10715Clytia hemisphaericaexon
TCONS_00042797-exon-sc0003684-1575043694:10474..10715TCONS_00042797-exon-sc0003684-1575043694:10474..10715Clytia hemisphaericaexon
TCONS_00042797-exon-sc0003684-1491911889:16830..17284TCONS_00042797-exon-sc0003684-1491911889:16830..17284Clytia hemisphaericaexon
TCONS_00042797-exon-sc0003684-1510915933:16830..17284TCONS_00042797-exon-sc0003684-1510915933:16830..17284Clytia hemisphaericaexon
TCONS_00042797-exon-sc0003684-1575043694:16830..17284TCONS_00042797-exon-sc0003684-1575043694:16830..17284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003684supercontigsc0003684:8608..17284 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.000283766	0	0.211348	0	0.314438	0.282992	0	0	0.418847	0.542894	0.822597	0	0	0	0	0	0	0	0	0	0	1.81869	3.17273	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004273Dynein_heavy_dom
Vocabulary: Cellular Component
TermDefinition
GO:0030286dynein complex
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
cellular_component GO:0030286 dynein complex
molecular_function GO:0003777 microtubule motor activity
Blast
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BLAST of TCONS_00042797 vs. Swiss-Prot (Human)
Match: DYH10 (Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4)

HSP 1 Score: 164.081 bits (414), Expect = 3.075e-43
Identity = 78/129 (60.47%), Postives = 102/129 (79.07%), Query Frame = 3 
Query:  360 YMEVIEALPLANTPDVFGLHPNAEIGYSTTAAKDMWTQLVELQPQTGGDSGGKSREEFIGKIAADIQEKLPTLYDVNGFRKKLGLEISPTTVVLLQEL---DVLIRKMGTTLMNLQRALAGEVGMDNGL 737
            ++E IEALPLANTP+VFGLHPNAEIGY T AA+DMW  L+ELQPQTG  S G SR+++IG++A +I+ K+P ++D++  RK+LG  +SPT+VVLLQEL   + L+ +M  +L  LQRALAGEVGM N L
Sbjct: 4142 FVEAIEALPLANTPEVFGLHPNAEIGYYTQAARDMWAHLLELQPQTGESSSGISRDDYIGQVAKEIENKMPKVFDLDQVRKRLGTGLSPTSVVLLQELERFNKLVVRMTKSLAELQRALAGEVGMSNEL 4270
The following BLAST results are available for this feature:
BLAST of TCONS_00042797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH103.075e-4360.47Dynein heavy chain 10, axonemal OS=Homo sapiens GN... [more]
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