TCONS_00042793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042793
Unique NameTCONS_00042793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042793 ID=TCONS_00042793|Name=TCONS_00042793|organism=Clytia hemisphaerica|type=transcript|length=638bp
ATTTTAACCTCGAACCTACCGATCCTAAAATGGCACGTTTCCTTGAACTG
AATGACATGTCGaatgtcatcaaaacaaaaacctgttttaaatctgaaaa
aggAACGTGTATAGATCTAAtcctaaaaaattctaaaaatctttctaaaa
gtTCAGGCACGGTAGAAACGGGGCTTAGTGATTTCCATCGGCTAATTTAT
GCAGTGCTTAAGACCAAGTACACGAAATTATCTccgaaaattatcaaata
tagagattataaaaattttaataaaaataattttttatatgaACTAGAAC
ATTACATTTCCagtaacatttttgaaaattaggatCAGTTTGAAAATGTC
TTTAATAATATTGTAAACAGGCATGCTCCACTGAAAACTAAATTTCTCAG
GGCAAATAACAAACCTCATGTCACTCTTCCTCAGGAACGCTATCATGATA
AGGTCCCATCTCAAAGCGGTGGCTATAAAATCTAAACAACCTGAGGATAA
AGCTATCTACAATCGCTAGAGAGAAATTTGGTTGTTCGATTGAACAAAAA
AGCAAATAAACTTTTCTTCagcaaaaacaatcaaaattccaAACATTTTT
GGGATAccataaaaactaaattttcaaataaaaactgc
Run BLAST on NCBI

protein sequence of TCONS_00042793-protein

>TCONS_00042793-protein ID=TCONS_00042793-protein|Name=TCONS_00042793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
FNLEPTDPKMARFLELNDMSNVIKTKTCFKSEKGTCIDLILKNSKNLSKS
SGTVETGLSDFHRLIYAVLKTKYTKLSPKIIKYRDYKNFNKNNFLYELEH
YISSNIFEN
Run BLAST on NCBI

transcript from alignment at sc0003679:9308..9945

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042793 ID=TCONS_00042793|Name=TCONS_00042793|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at sc0003679:9308..9945 (Clytia hemisphaerica)
gcagtttttatttgaaaatttagtttttatggTATCCCAAAAATGTTtgg
aattttgattgtttttgctGAAGAAAAGTTTATTTGCTTTTTTGTTCAAT
CGAACAACCAAATTTCTCTCTAGCGATTGTAGATAGCTTTATCCTCAGGT
TGTTTAGATTTTATAGCCACCGCTTTGAGATGGGACCTTATCATGATAGC
GTTCCTGAGGAAGAGTGACATGAGGTTTGTTATTTGCCCTGAGAAATTTA
GTTTTCAGTGGAGCATGCCTGTTTACAATATTATTAAAGACATTTTCAAA
CTGatcctaattttcaaaaatgttactGGAAATGTAATGTTCTAGTtcat
ataaaaaattatttttattaaaatttttataatctctatatttgataatt
ttcggAGATAATTTCGTGTACTTGGTCTTAAGCACTGCATAAATTAGCCG
ATGGAAATCACTAAGCCCCGTTTCTACCGTGCCTGAacttttagaaagat
ttttagaattttttaggaTTAGATCTATACACGTTcctttttcagattta
aaacaggtttttgttttgatgacattCGACATGTCATTCAGTTCAAGGAA
ACGTGCCATTTTAGGATCGGTAGGTTCGAGGTTAAAAT

Coding sequence (CDS) from alignment at sc0003679:9308..9945

>TCONS_00042793 ID=TCONS_00042793|Name=TCONS_00042793|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0003679:9308..9945 (Clytia hemisphaerica)
ctaattttcaaaaatgttactGGAAATGTAATGTTCTAGTtcatataaaa
aattatttttattaaaatttttataatctctatatttgataattttcggA
GATAATTTCGTGTACTTGGTCTTAAGCACTGCATAAATTAGCCGATGGAA
ATCACTAAGCCCCGTTTCTACCGTGCCTGAacttttagaaagatttttag
aattttttaggaTTAGATCTATACACGTTcctttttcagatttaaaacag
gtttttgttttgatgacattCGACATGTCATTCAGTTCAAGGAAACGTGC
CATTTTAGGATCGGTAGGTTCGAGGTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026592XLOC_026592Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042793-proteinTCONS_00042793-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042793-exon-sc0003679-1491911889:9308..9945TCONS_00042793-exon-sc0003679-1491911889:9308..9945Clytia hemisphaericaexon
TCONS_00042793-exon-sc0003679-1510915933:9308..9945TCONS_00042793-exon-sc0003679-1510915933:9308..9945Clytia hemisphaericaexon
TCONS_00042793-exon-sc0003679-1575043694:9308..9945TCONS_00042793-exon-sc0003679-1575043694:9308..9945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003679supercontigsc0003679:9308..9945 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.413494	0.403221	0	0.105984	6.06777	5.55204	2.3795	3.1852	1.44153	1.22947	0.837849	1.59723	0.660004	0	0.451094	0.151183	0.310408	0.303358	0.527463	0.217234	1.11941	0.468007	0.816665	0.517235	0.17758	0.871672	0.453585	0	0	0.280556
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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