TCONS_00042792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042792
Unique NameTCONS_00042792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042792 ID=TCONS_00042792|Name=TCONS_00042792|organism=Clytia hemisphaerica|type=transcript|length=379bp
aATAAATCGAAACCGAAATTCAGaccaatgttttgatttcaccAAGGTTG
AAGAGACTGAAGTTCTCAAGGTCATTTTGAGCTTAAACAATTCTAAATCT
GTAAGCGGGACAATACCGACTCGTATGCTTAAGATTGCTGCAAATACCGG
TGTACCATTTTTGACCACGTGCTTTAACAATTGCGTGGAATCTGGAACTT
TTCCCGATCGACTTAAGCTTGCTGACATTATTCCTAGTTTTAAAAAGttg
tatcaaaaatatttgaacgcTTGATTGTAAATCAACTCAACGTTCATTTC
GAGCCTCAATTTTCTAAACTTCTTTGTGGTTTCAGAAAAGGCCATAGCAC
TCAACATGCCATTTTAAATATGATCAAAN
Run BLAST on NCBI

transcript from alignment at sc0003679:7348..7726

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042792 ID=TCONS_00042792|Name=TCONS_00042792|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at sc0003679:7348..7726 (Clytia hemisphaerica)
NTTTGATCATATTTAAAATGGCATGTTGAGTGCTATGGCCTTTTCTGAAA
CCACAAAGAAGTTTAGAAAATTGAGGCTCGAAATGAACGTTGAGTTGATT
TACAATCAAgcgttcaaatatttttgatacaaCTTTTTAAAACTAGGAAT
AATGTCAGCAAGCTTAAGTCGATCGGGAAAAGTTCCAGATTCCACGCAAT
TGTTAAAGCACGTGGTCAAAAATGGTACACCGGTATTTGCAGCAATCTTA
AGCATACGAGTCGGTATTGTCCCGCTTACAGATTTAGAATTGTTTAAGCT
CAAAATGACCTTGAGAACTTCAGTCTCTTCAACCTTggtgaaatcaaaac
attggtCTGAATTTCGGTTTCGATTTATt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026591XLOC_026591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042792-exon-sc0003679-1491911889:7348..7726TCONS_00042792-exon-sc0003679-1491911889:7348..7726Clytia hemisphaericaexon
TCONS_00042792-exon-sc0003679-1510915933:7348..7726TCONS_00042792-exon-sc0003679-1510915933:7348..7726Clytia hemisphaericaexon
TCONS_00042792-exon-sc0003679-1575043694:7348..7726TCONS_00042792-exon-sc0003679-1575043694:7348..7726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003679supercontigsc0003679:7348..7726 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.203508	0.97468	0	8.44301	5.93401	4.82953	4.58464	1.07457	1.12895	1.22859	0.583688	0.616711	0	0.177472	0.242001	0	0.351519	0.887379	0.232145	0.376928	0.531724	0.261859	0.374801	0.270198	0.959358	1.02093	0.305397	0	0.471994
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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