TCONS_00042788 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042788
Unique NameTCONS_00042788
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042788 ID=TCONS_00042788|Name=TCONS_00042788|organism=Clytia hemisphaerica|type=transcript|length=497bp
GTTGGGTATTTGGTCAACTTTCATCCAATCTCTGTAGATGATTATGACTC
CTCCTTTTCCGTCTTCCCTATCTCTACGTTCTGCTAGGTAATGTGGTGGT
AAGAATTCAGAGTTTTTGGTACGTTCTTTAAGATGAGATTCGGATCCAAT
TACTACGTCGATTTGGTGGTCCTGGAAGAACTTTTCTAAAGAGTTACGTT
TGCTCCAGATACTTTGAAAGTTACATACCAGAATTCTGAGTTTATCGACT
TTCTTCTTATTCTTTTCATTATTGTCAGGTTGGATAGCAACATCGGTATC
AGACTCTCTGTTCTCGTTCTCAAGAAGGTTGGTACAATCACTACAGTGCC
AAGGAATGTCTACGTCGTTTGTGTGTCTTATGAATGTTTCAATGTCCATG
GAAACACATATTTGATGGAACCATTGATCACAGGTGTCGCATGCTATTGC
ATTTTCATCTTGTTTGAATGGTTGTTTGCATGGTTAGCATATCATCT
Run BLAST on NCBI

protein sequence of TCONS_00042788-protein

>TCONS_00042788-protein ID=TCONS_00042788-protein|Name=TCONS_00042788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MDIETFIRHTNDVDIPWHCSDCTNLLENENRESDTDVAIQPDNNEKNKKK
VDKLRILVCNFQSIWSKRNSLEKFFQDHQIDVVIGSESHLKERTKNSEFL
PPHYLAERRDREDGKGGVIIIYRDWMKVDQIPN
Run BLAST on NCBI

transcript from alignment at sc0003677:7037..7533

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042788 ID=TCONS_00042788|Name=TCONS_00042788|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at sc0003677:7037..7533 (Clytia hemisphaerica)
AGATGATATGCTAACCATGCAAACAACCATTCAAACAAGATGAAAATGCA
ATAGCATGCGACACCTGTGATCAATGGTTCCATCAAATATGTGTTTCCAT
GGACATTGAAACATTCATAAGACACACAAACGACGTAGACATTCCTTGGC
ACTGTAGTGATTGTACCAACCTTCTTGAGAACGAGAACAGAGAGTCTGAT
ACCGATGTTGCTATCCAACCTGACAATAATGAAAAGAATAAGAAGAAAGT
CGATAAACTCAGAATTCTGGTATGTAACTTTCAAAGTATCTGGAGCAAAC
GTAACTCTTTAGAAAAGTTCTTCCAGGACCACCAAATCGACGTAGTAATT
GGATCCGAATCTCATCTTAAAGAACGTACCAAAAACTCTGAATTCTTACC
ACCACATTACCTAGCAGAACGTAGAGATAGGGAAGACGGAAAAGGAGGAG
TCATAATCATCTACAGAGATTGGATGAAAGTTGACCAAATACCCAAC

Coding sequence (CDS) from alignment at sc0003677:7037..7533

>TCONS_00042788 ID=TCONS_00042788|Name=TCONS_00042788|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0003677:7037..7533 (Clytia hemisphaerica)
ATGGACATTGAAACATTCATAAGACACACAAACGACGTAGACATTCCTTG
GCACTGTAGTGATTGTACCAACCTTCTTGAGAACGAGAACAGAGAGTCTG
ATACCGATGTTGCTATCCAACCTGACAATAATGAAAAGAATAAGAAGAAA
GTCGATAAACTCAGAATTCTGGTATGTAACTTTCAAAGTATCTGGAGCAA
ACGTAACTCTTTAGAAAAGTTCTTCCAGGACCACCAAATCGACGTAGTAA
TTGGATCCGAATCTCATCTTAAAGAACGTACCAAAAACTCTGAATTCTTA
CCACCACATTACCTAGCAGAACGTAGAGATAGGGAAGACGGAAAAGGAGG
AGTCATAATCATCTACAGAGATTGGATGAAAGTTGACCAAATACCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026587XLOC_026587Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042788-exon-sc0003677-1491911889:7037..7533TCONS_00042788-exon-sc0003677-1491911889:7037..7533Clytia hemisphaericaexon
TCONS_00042788-exon-sc0003677-1510915933:7037..7533TCONS_00042788-exon-sc0003677-1510915933:7037..7533Clytia hemisphaericaexon
TCONS_00042788-exon-sc0003677-1575043694:7037..7533TCONS_00042788-exon-sc0003677-1575043694:7037..7533Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042788-proteinTCONS_00042788-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003677supercontigsc0003677:7037..7533 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23187	0.961011	1.81322	3.13853	3.4886	4.06948	2.85076	4.89289	1.86853	1.28582	3.36972	1.14858	2.13012	1.9569	0.699494	0.975864	1.10971	0.663492	0.5238	0.13703	0.476415	0	0.42373	0.256821	2.24842	2.47882	0.844566	1.44215	0.683638	0.417911
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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