TCONS_00042784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042784
Unique NameTCONS_00042784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042784 ID=TCONS_00042784|Name=TCONS_00042784|organism=Clytia hemisphaerica|type=transcript|length=560bp
ATTTACCAAGTGGGGATTGACATTGTGGCCTTACTTGGCCGTGTAAACAC
TGACATTTCTGACATCAGGAAAAAACCTGCCGTTTCTGTGTTGAAACCAG
AATTCAAATGCTTGACGACACAAACTAAATCCTCAAATTCAAAACTATTC
GGTGAAAATGTATCGAAAGTcttgaaaagtattgatattACCAACAAAGT
TGGTGGAAAAATAAAGAAGTACAACAACCGATCGTCTTACCAAAAGAAAG
AATCCTATGACAGACAAGACAGATCTTACAACAAATCGCAGTCTTTTTTA
GGACACGGCCGAAATTCCTGGCAACAAGGTCGGAACAATTATCACAATCA
TCGTCATTCaagcagcaacaacaacaacagaaatcaaaagagaaaaaact
aAAAGTGAGTTCTttgaaaaacatcaaagaaCAAACTGAAGCATTGAATG
ATTACTTAACAGCCAAAGTTGAAAACTTTAGTGCTGGACAACTCTCCAAT
CATTTAGAAGAATGGGAGAATTATACAAGTGATCCAGAAATTCTTCAAAT
TGTTCTTGGT
Run BLAST on NCBI

protein sequence of TCONS_00042784-protein

>TCONS_00042784-protein ID=TCONS_00042784-protein|Name=TCONS_00042784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
IYQVGIDIVALLGRVNTDISDIRKKPAVSVLKPEFKCLTTQTKSSNSKLF
GENVSKVLKSIDITNKVGGKIKKYNNRSSYQKKESYDRQDRSYNKSQSFL
GHGRNSWQQGRNNYHNHRHSSSNNNNRNQKRKN
Run BLAST on NCBI

transcript from alignment at sc0003671:5657..6216

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042784 ID=TCONS_00042784|Name=TCONS_00042784|organism=Clytia hemisphaerica|type=transcript|length=560bp|location=Sequence derived from alignment at sc0003671:5657..6216 (Clytia hemisphaerica)
ACCAAGAACAATTTGAAGAATTTCTGGATCACTTGTATAATTCTCCCATT
CTTCTAAATGATTGGAGAGTTGTCCAGCACTAAAGTTTTCAACTTTGGCT
GTTAAGTAATCATTCAATGCTTCAGTTTGttctttgatgtttttcaaAGA
ACTCACTTTtagttttttctcttttgatttctgttgttgttgttgctgct
tGAATGACGATGATTGTGATAATTGTTCCGACCTTGTTGCCAGGAATTTC
GGCCGTGTCCTAAAAAAGACTGCGATTTGTTGTAAGATCTGTCTTGTCTG
TCATAGGATTCTTTCTTTTGGTAAGACGATCGGTTGTTGTACTTCTTTAT
TTTTCCACCAACTTTGTTGGTaatatcaatacttttcaagACTTTCGATA
CATTTTCACCGAATAGTTTTGAATTTGAGGATTTAGTTTGTGTCGTCAAG
CATTTGAATTCTGGTTTCAACACAGAAACGGCAGGTTTTTTCCTGATGTC
AGAAATGTCAGTGTTTACACGGCCAAGTAAGGCCACAATGTCAATCCCCA
CTTGGTAAAT

Coding sequence (CDS) from alignment at sc0003671:5657..6216

>TCONS_00042784 ID=TCONS_00042784|Name=TCONS_00042784|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0003671:5657..6216 (Clytia hemisphaerica)
TtagttttttctcttttgatttctgttgttgttgttgctgcttGAATGAC
GATGATTGTGATAATTGTTCCGACCTTGTTGCCAGGAATTTCGGCCGTGT
CCTAAAAAAGACTGCGATTTGTTGTAAGATCTGTCTTGTCTGTCATAGGA
TTCTTTCTTTTGGTAAGACGATCGGTTGTTGTACTTCTTTATTTTTCCAC
CAACTTTGTTGGTaatatcaatacttttcaagACTTTCGATACATTTTCA
CCGAATAGTTTTGAATTTGAGGATTTAGTTTGTGTCGTCAAGCATTTGAA
TTCTGGTTTCAACACAGAAACGGCAGGTTTTTTCCTGATGTCAGAAATGT
CAGTGTTTACACGGCCAAGTAAGGCCACAATGTCAATCCCCACTTGGTAA
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026583XLOC_026583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042784-exon-sc0003671-1491911889:5657..6216TCONS_00042784-exon-sc0003671-1491911889:5657..6216Clytia hemisphaericaexon
TCONS_00042784-exon-sc0003671-1510915933:5657..6216TCONS_00042784-exon-sc0003671-1510915933:5657..6216Clytia hemisphaericaexon
TCONS_00042784-exon-sc0003671-1575043694:5657..6216TCONS_00042784-exon-sc0003671-1575043694:5657..6216Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042784-proteinTCONS_00042784-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003671supercontigsc0003671:5657..6216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.686585	0.514662	0.285801	0.271459	1.90866	1.06382	2.51625	2.54088	1.53865	1.18817	0.990305	2.08017	1.19483	0.721018	0.414082	1.12631	0.814547	1.39153	0.626064	1.20339	1.90201	2.54107	1.25463	1.97175	1.03593	0.805165	2.41103	1.4733	1.98888	2.0834
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top