TCONS_00042783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042783
Unique NameTCONS_00042783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042783 ID=TCONS_00042783|Name=TCONS_00042783|organism=Clytia hemisphaerica|type=transcript|length=726bp
TGACCATCAACGCTTCTCGAATTCAAACAACATTGACTTGGGGGAGTGGG
GGGAGGTGTCAGTCTCACAATATTATGCAGATGATTGTAGCATGCTAGCT
TCCagcattaaaaaaaaatacagcCCCAGTCAAGCAAAATTTGTTTAGGG
GGGGGGCCTATGCTCAGGGGAGTGCATCCTATTATGCACCAAGaacaaat
aattatttattcatTACCAGCCTTCTAAAAAGCCGACCATGTCGTtaagg
gttgataggtgtacacgctttttttaataagagtaacttctataagaata
tcagggtgagatttcagagttagaacaataggcctattgtttagaacaat
agaaaaataagaataatgctcgtAAATTTGTTAAGCTTTTGAGCTCCATA
TGGACATTCAAGACATTTCGTGGGGCCTGAGTTTTCTCagttaaaacaat
aagaaagaaaattcccTGATCTCCcctatttttttcttaaaccGATCATT
TTCCAAATGACAGTTTTTAGCAGTAGGTAAAAACACTCTATCGTCCCCAT
ATACCCCTACCTTGACCAATAAGATTCGTACCTTGAGGGTATCTAGACAA
ATATTTCCAGCCATATCAACGTTCGGATGAAAACAAGGAGTGGCAAATGT
GATGGTTGGTGCTTCGTATGGATAAGTTGCTGGAAATTTTAAACTCATCT
TGTATGCTTTTCCGCTGTACACCTAG
Run BLAST on NCBI

transcript from alignment at sc0003670:9516..10241

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042783 ID=TCONS_00042783|Name=TCONS_00042783|organism=Clytia hemisphaerica|type=transcript|length=726bp|location=Sequence derived from alignment at sc0003670:9516..10241 (Clytia hemisphaerica)
CTAGGTGTACAGCGGAAAAGCATACAAGATGAGTTTAAAATTTCCAGCAA
CTTATCCATACGAAGCACCAACCATCACATTTGCCACTCCTTGTTTTCAT
CCGAACGTTGATATGGCTGGAAATATTTGTCTAGATACCCTCAAGGTACG
AATCTTATTGGTCAAGGTAGGGGTATATGGGGACGATAGAGTGTTTTTAC
CTACTGCTAAAAACTGTCATTTGGAAAATGATCggtttaagaaaaaaata
ggGGAGATCAgggaattttctttcttattgttttaactGAGAAAACTCAG
GCCCCACGAAATGTCTTGAATGTCCATATGGAGCTCAAAAGCTTAACAAA
TTTacgagcattattcttatttttctattgttctaaacaataggcctatt
gttctaactctgaaatctcaccctgatattcttatagaagttactcttat
taaaaaaagcgtgtacacctatcaacccttaACGACATGGTCGGCTTTTT
AGAAGGCTGGTAatgaataaataattatttgttCTTGGTGCATAATAGGA
TGCACTCCCCTGAGCATAGGCCCCCCCCCTAAACAAATTTTGCTTGACTG
GGgctgtatttttttttaatgctGGAAGCTAGCATGCTACAATCATCTGC
ATAATATTGTGAGACTGACACCTCCCCCCACTCCCCCAAGTCAATGTTGT
TTGAATTCGAGAAGCGTTGATGGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026582XLOC_026582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042783-exon-sc0003670-1491911889:9516..10241TCONS_00042783-exon-sc0003670-1491911889:9516..10241Clytia hemisphaericaexon
TCONS_00042783-exon-sc0003670-1510915933:9516..10241TCONS_00042783-exon-sc0003670-1510915933:9516..10241Clytia hemisphaericaexon
TCONS_00042783-exon-sc0003670-1575043694:9516..10241TCONS_00042783-exon-sc0003670-1575043694:9516..10241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003670supercontigsc0003670:9516..10241 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.942102	0.74263	1.50141	0.740698	1.60734	1.34918	0.472131	0.556799	5.96977	6.56059	4.75682	4.92866	4.12754	3.68456	2.64889	2.89828	2.88719	2.97919	1.04744	1.44568	1.94266	1.68759	3.93979	3.66515	0.565	0.605587	1.96883	1.67102	4.42975	5.15431
Blast
[Close]
BLAST of TCONS_00042783 vs. Swiss-Prot (Human)
Match: UBE2C (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.084e-16
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = -2 
Query:  558 VYSGKAYKMSLKFPATYPYEAPTITFATPCFHPNVDMAGNICLDTLK--------VRILLVKV 722
            VY    YK+SL+FP+ YPY APT+ F TPC+HPNVD  GNICLD LK        VR +L+ +
Sbjct:   73 VYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSI 135
The following BLAST results are available for this feature:
BLAST of TCONS_00042783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBE2C3.084e-1653.97Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
back to top