|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042776 ID=TCONS_00042776|Name=TCONS_00042776|organism=Clytia hemisphaerica|type=transcript|length=2037bp
TTTTAGTAAACATTTGTGCTGATTTAAGTGTAGATTGCATACAatctata
aatttatttttggcaAGTAGGAAGTCATCTATAAAGCCACATATTGGTAT
TCCCAGTGTCCTCAGTTTGCTCATAGGGACTGCAGTGAGTTTGGTGAATT
TTCTTGGACAAGGTCCAAGGCCATTGGGATAACATGTGAATTTATAGATG
GTtccttgaaatgaaaattttagaaaacattgaTAATCCCTGTGTATGGG
AACACTGTAATATGCATCTTTGAGGTCTATTGAAGTCAAGTAGTCCCCTT
TTGATATCATAAGTAAAGCATCTTTAATAGTTTGCATTTTGAAGTGTTGA
aactcaatattttgatttaaacttTTAAGGTTCAGAATCATCCTTGTACC
CCCATCATCTTTTGGTTTTACAAATATAGGGGATATAAATTCTATTTTCT
CATGGTTTGTTTTTACTagaacttttttctttagcagtttttcaatttca
tgtcGAATATTTTCTAGATCTTCTTTATCTAAGAAGCTGTTGTTCGCAAA
GTGTTTTATTGGCAAGTCAGGAGTTGTGAACTTTAATTTGTCTCCTCTTA
TAATTGACAGAATATTTTGATCCTTGGTCATATTTTCCCATTCTGAAAAG
TAGTTTTTTAGTCTTCCCCCTTTAAATTGTTGGACATTTATCTGAGATGC
TTTAATAAATTCTTTTACCTTTTGTTGTAAGTCTTGAACTTCtgaggttg
gtttttcgactTCTGAGGTTGATTTCTCGACAACTGAGGTTGATTTCTTG
ACAACTGAGGTTGATTTCTTGACATCTGAGGTCTTGGTTGCACTTGTTTT
TAGCTCTAGTTTCTTTTTGTGTTGGTGTTTGTGGAGGAGGACATCCTCCC
CCGGCCTCGGCCTAAAAAAGAATTTGGACGAGTGTTTTTGTTGTAAGGAT
TGTATTCACTGTTTCGCTTTGAGAACTGGCTTTTCTGTTTATAGTTTGat
gttttgttattgtttttcagtttgtttcttaatttcaaatctttaatatt
ttggctCAGGTTATCCCCAAAAAGTTTTTCAGTTAGTTTGTTGTTGTCTC
CTGTGGATACCAAGTCTAAATTCATCTTTAAGGGctgattttataaaaag
tttccTCTTAAAGGCAATGTCTTTGGATGCTTGACCAATGAGGCCTGCTA
TATCCGAAGATATTTGAACAAGCTCTTTCTTGTTCGCGTCTTCATTGAgt
acatttttaataatttttattacCCCAGAGAGGGCAGAAATTAGATTTCT
TTGGATCATAGCCATGGATACATCACTTTTTCGTTGAAAACTGTTGAGTA
ATTGCCATAACTCAACGTTTAGTTTAGGCACTGGTATGTTGCAGTTTTCA
GGTAGAGGGTAGCTCTGTCTGAGCTTTTTGATATTCTCCTTATCTTTCTT
GGAATTGTAGCTGTCAAGAATTATTCTAGCAAAgtcatcttttatttttt
ccccCTTGTCTTCTTCTGTTGAGACAATCCTTATGTCAGAGAAAATATCG
TCATCTTGTGTGCTTGTAGATGGTTCATTTTGCACTTGGATGCTGGTGGG
GACCGCAGAAGGGGTGTCGTCCTTAGTTTTAGAGCTAGTATTTTCCtcta
tttcattttcaaaatcctCATTTTGGGAGGCATATAGTTCTAATTCTTCG
TCAAAATCAAGTTCATTAAATTCCATATCCTCATCCTCCTCTTCATAATA
GTCCCTCTGAGGGGAGGTATCTATGCCCTGCTGAGGGGTTGGTCTTTTCG
AGGAGGTTTGTGATGATGTCAGAGCATCTATTTGTTTCTGCATGTTGTTG
ACTATATTTCTTAGTTGCTCATTTGTATTTGAATTATGATCTGGTGAGGA
ATCTGACATTTTGTTTAGGTTctaaaagagaagaaagaaagtaaagaaaa
aacACTTATCTGATTCTTGTTTCTTCCACGTTTTCGCAGCTTCTCCGCCC
TGTTGCTTGATCCGTCATGAACTGACCAGCTTGCCGT Run BLAST on NCBI transcript from alignment at sc0003667:1..2157- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042776 ID=TCONS_00042776|Name=TCONS_00042776|organism=Clytia hemisphaerica|type=transcript|length=2157bp|location=Sequence derived from alignment at sc0003667:1..2157- (Clytia hemisphaerica)
TTTTAGTAAACATTTGTGCTGATTTAAGTGTAGATTGCATACAATCTATA
AATTTATTTTTGGCAAGTAGGAAGTCATCTATAAAGCCACATATTGGTAT
TCCCAGTGTCCTCAGTTTGCTCATAGGGACTGCAGTGAGTTTGGTGAATT
TTCTTGGACAAGGTCCAAGGCCATTGGGATAACATGTGAATTTATAGATG
GTTCCTTGAAATGAAAATTTTAGAAAACATTGATAATCCCTGTGTATGGG
AACACTGTAATATGCATCTTTGAGGTCTATTGAAGTCAAGTAGTCCCCTT
TTGATATCATAAGTAAAGCATCTTTAATAGTTTGCATTTTGAAGTGTTGA
AACTCAATATTTTGATTTAAACTTTTAAGGTTCAGAATCATCCTTGTACC
CCCATCATCTTTTGGTTTTACAAATATAGGGGATATAAATTCTATTTTCT
CATGGTTTGTTTTTACTAGAACTTTTTTCTTTAGCAGTTTTTCAATTTCA
TGTCGAATATTTTCTAGATCTTCTTTATCTAAGAAGCTGTTGTTCGCAAA
GTGTTTTATTGGCAAGTCAGGAGTTGTGAACTTTAATTTGTCTCCTCTTA
TAATTGACAGAATATTTTGATCCTTGGTCATATTTTCCCATTCTGAAAAG
TAGTTTTTTAGTCTTCCCCCTTTAAATTGTTGGACATTTATCTGAGATGC
TTTAATAAATTCTTTTACCTTTTGTTGTAAGTCTTGAACTTCTGAGGTTG
GTTTTTCGACTTCTGAGGTTGATTTCTCGACAACTGAGGTTGATTTCTTG
ACATCTGAGGTCTTGGTTGCACTTGTTTTTAGCTCTAGTTTCTTTTTGTG
TTGGTGTTTGTGGAGGAGGACATCCTCCCCTGGCCTCTGCNATTTTTCGA
CTTCTGAGGTTGATTTCTCGACAACTGAGGTTGATTTCTTGACATCTGAG
GTCTTGGTTGCACTTGTTTTTAGCTCTAGTTTCTTTTTGTGTTGGTGTTT
GTGGAGGAGGACATCCTCCCCCGGCCTCGGCCTAAAAAAGAATTTGGACG
AGTGTTTTTGTTGTAAGGATTGTATTCACTGTTTCGCTTTGAGAACTGGC
TTTTCTGTTTATAGTTTGATGTTTTGTTATTGTTTTTCAGTTTGTTTCTT
AATTTCAAATCTTTAATATTTTGGCTCAGGTTATCCCCAAAAAGTTTTTC
AGTTAGTTTGTTGTTGTCTCCTGTGGATACCAAGTCTAAATTCATCTTTA
AGGGCTGATTTTATAAAAAGTTTCCTCTTAAAGGCAATGTCTTTGGATGC
TTGACCAATGAGGCCTGCTATATCCGAAGATATTTGAACAAGCTCTTTCT
TGTTCGCGTCTTCATTGAGTACATTTTTAATAATTTTTATTACCCCAGAG
AGGGCAGAAATTAGATTTCTTTGGATCATAGCCATGGATACATCACTTTT
TCGTTGAAAACTGTTGAGTAATTGCCATAACTCAACGTTTAGTTTAGGCA
CTGGTATGTTGCAGTTTTCAGGTAGAGGGTAGCTCTGTCTGAGCTTTTTG
ATATTCTCCTTATCTTTCTTGGAATTGTAGCTGTCAAGAATTATTCTAGC
AAAGTCATCTTTTATTTTTTCCCCCTTGTCTTCTTCTGTTGAGACAATCC
TTATGTCAGAGAAAATATCGTCATCTTGTGTGCTTGTAGATGGTTCATTT
TGCACTTGGATGCTGGTGGGGACCGCAGAAGGGGTGTCGTCCTTAGTTTT
AGAGCTAGTATTTTCCTCTATTTCATTTTCAAAATCCTCATTTTGGGAGG
CATATAGTTCTAATTCTTCGTCAAAATCAAGTTCATTAAATTCCATATCC
TCATCCTCCTCTTCATAATAGTCCCTCTGAGGGGAGGTATCTATGCCCTG
CTGAGGGGTTGGTCTTTTCGAGGAGGTTTGTGATGATGTCAGAGCATCTA
TTTGTTTCTGCATGTTGTTGACTATATTTCTTAGTTGCTCATTTGTATTT
GAATTATGATCTGGTGAGGAATCTGACATTTTGTTTAGGTTCTAAAAGAG
AAGAAAGAAAGTAAAGAAAAAACACTTATCTGATTCTTGTTTCTTCCACG
TTTTCGCAGCTTCTCCGCCCTGTTGCTTGATCCGTCATGAACTGACCAGC
TTGCCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042776-exon-sc0003667-1575043694:1356..2157 | TCONS_00042776-exon-sc0003667-1575043694:1356..2157 | Clytia hemisphaerica | exon |
| TCONS_00042776-exon-sc0003667-1575043694:1..1235 | TCONS_00042776-exon-sc0003667-1575043694:1..1235 | Clytia hemisphaerica | exon |
| TCONS_00042776-exon-sc0003667-1510915933:1356..2157 | TCONS_00042776-exon-sc0003667-1510915933:1356..2157 | Clytia hemisphaerica | exon |
| TCONS_00042776-exon-sc0003667-1510915933:1..1235 | TCONS_00042776-exon-sc0003667-1510915933:1..1235 | Clytia hemisphaerica | exon |
| TCONS_00042776-exon-sc0003667-1491911889:1356..2157 | TCONS_00042776-exon-sc0003667-1491911889:1356..2157 | Clytia hemisphaerica | exon |
| TCONS_00042776-exon-sc0003667-1491911889:1..1235 | TCONS_00042776-exon-sc0003667-1491911889:1..1235 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003667 | supercontig | sc0003667:1..2157 - |
Blast
The following BLAST results are available for this feature:
|
