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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042775 ID=TCONS_00042775|Name=TCONS_00042775|organism=Clytia hemisphaerica|type=transcript|length=1036bp
GCAACAGGGCGGAGAAGCTGCGAAAACGTGGAAGAAACAAGAATCAGATA
AGTgttttttctttactttctttcttctcttttagAACCTAAACAAAATG
TCAGATTCCTCACCAGATCATAATTCAAATACAAATGAGCAACTAAGAAA
TATAGTCAACAACATGCAGAAACAAATAGATGCTCTGACATCATCACAAA
CCTCCTCGAAAAGACCAACCCCTCAGCAGGGCATAGATACCTCCCCTCAG
AGGGACTATTATGAAGAGGAGGATGAGGATATGGAATTTAATGAACTTGA
TTTTGACGAAGAATTAGAACTATATGCCTCCCAAAATGaggattttgaaa
atgaaatagaGGAAAATACTAGCTCTAAAACTAAGGACGACACCCCTTCT
GCGGTCCCCACCAGCATCCAAGTGCAAAATGAACCATCTACAAGCACACA
AGATGACGATATTTTCTCTGACATAAGGATTGTCTCAACAGAAGAAGACA
AGggggaaaaaataaaagatgacTTTGCTAGAATAATTCTTGACAGCTAC
AATTCCAAGAAAGATAAGGAGAATATCAAAAAGCTCAGACAGAGCTACCC
TCTACCTGAAAACTGCAACATACCAGTGCCTAAACTAAACGTTGAGTTAT
GGCAATTACTCAACAGTTTTCAACGAAAAAGTGATGTATCCATGGCTATG
ATCCAAAGAAATCTAATTTCTGCCCTCTCTGGGGCCGAGGCCGGGGGAGG
ATGTCCTCCTCCACAAACACCAACACAAAAAGAAACTAGAGCTAAAAACA
AGTGCAACCAAGACCTCAGATGTCAAGAAATCAACCTCAGTTGTCGAGAA
ATCAACCTCAGAAGTCGAAAAATNGCAGAGGCCAGGGGAGGATGTCCTCC
TCCACAAACACCAACACAAAAAGAAACTAGAGCTAAAAACAAGTGCAACC
AAGACCTCAGATGTCAAGAAATCAACCTCAGTTGTCGAGAAATCAACCTC
AGAagtcgaaaaaccaacctcaGAAGTTCAAGACTT Run BLAST on NCBI protein sequence of TCONS_00042775-protein >TCONS_00042775-protein ID=TCONS_00042775-protein|Name=TCONS_00042775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MSDSSPDHNSNTNEQLRNIVNNMQKQIDALTSSQTSSKRPTPQQGIDTSP
QRDYYEEEDEDMEFNELDFDEELELYASQNEDFENEIEENTSSKTKDDTP
SAVPTSIQVQNEPSTSTQDDDIFSDIRIVSTEEDKGEKIKDDFARIILDS
YNSKKDKENIKKLRQSYPLPENCNIPVPKLNVELWQLLNSFQRKSDVSMA
MIQRNLISALSGAEAGGGCPPPQTPTQKETRAKNKCNQDLRCQEINLSCR
EINLRSRKXAEARGGCPPPQTPTQKETRAKNKCNQDLRCQEINLSCREIN
LRSRKTNLRSSRL Run BLAST on NCBI transcript from alignment at sc0003667:32..1429+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042775 ID=TCONS_00042775|Name=TCONS_00042775|organism=Clytia hemisphaerica|type=transcript|length=1398bp|location=Sequence derived from alignment at sc0003667:32..1429+ (Clytia hemisphaerica)
GCAACAGGGCGGAGAAGCTGCGAAAACGTGGAAGAAACAAGAATCAGATA
AGTgttttttctttactttctttcttctcttttagAACCTAAACAAAATG
TCAGATTCCTCACCAGATCATAATTCAAATACAAATGAGCAACTAAGAAA
TATAGTCAACAACATGCAGAAACAAATAGATGCTCTGACATCATCACAAA
CCTCCTCGAAAAGACCAACCCCTCAGCAGGGCATAGATACCTCCCCTCAG
AGGGACTATTATGAAGAGGAGGATGAGGATATGGAATTTAATGAACTTGA
TTTTGACGAAGAATTAGAACTATATGCCTCCCAAAATGaggattttgaaa
atgaaatagaGGAAAATACTAGCTCTAAAACTAAGGACGACACCCCTTCT
GCGGTCCCCACCAGCATCCAAGTGCAAAATGAACCATCTACAAGCACACA
AGATGACGATATTTTCTCTGACATAAGGATTGTCTCAACAGAAGAAGACA
AGggggaaaaaataaaagatgacTTTGCTAGAATAATTCTTGACAGCTAC
AATTCCAAGAAAGATAAGGAGAATATCAAAAAGCTCAGACAGAGCTACCC
TCTACCTGAAAACTGCAACATACCAGTGCCTAAACTAAACGTTGAGTTAT
GGCAATTACTCAACAGTTTTCAACGAAAAAGTGATGTATCCATGGCTATG
ATCCAAAGAAATCTAATTTCTGCCCTCTCTGGGgtaataaaaattattaa
aaatgtacTCAATGAAGACGCGAACAAGAAAGAGCTTGTTCAAATATCTT
CGGATATAGCAGGCCTCATTGGTCAAGCATCCAAAGACATTGCCTTTAAG
AggaaactttttataaaatcagCCCTTAAAGATGAATTTAGACTTGGTAT
CCACAGGAGACAACAACAAACTAACTGAAAAACTTTTTGGGGATAACCTG
agccaaaatattaaagatttgaaattaagaaacaaactgaaaaacaataa
caaaacatCAAACTATAAACAGAAAAGCCAGTTCTCAAAGCGAAACAGTG
AATACAATCCTTACAACAAAAACACTCGTCCAAATTCTTTTTTAGGCCGA
GGCCGGGGGAGGATGTCCTCCTCCACAAACACCAACACAAAAAGAAACTA
GAGCTAAAAACAAGTGCAACCAAGACCTCAGATGTCAAGAAATCAACCTC
AGTTGTCGAGAAATCAACCTCAGAAGTCGAAAAATNGCAGAGGCCAGGGG
AGGATGTCCTCCTCCACAAACACCAACACAAAAAGAAACTAGAGCTAAAA
ACAAGTGCAACCAAGACCTCAGATGTCAAGAAATCAACCTCAGTTGTCGA
GAAATCAACCTCAGAagtcgaaaaaccaacctcaGAAGTTCAAGACTT Coding sequence (CDS) from alignment at sc0003667:32..1429+ >TCONS_00042775 ID=TCONS_00042775|Name=TCONS_00042775|organism=Clytia hemisphaerica|type=CDS|length=1878bp|location=Sequence derived from alignment at sc0003667:32..1429+ (Clytia hemisphaerica)
ATGTCAGATTCCTCACCAGATCATAATTCAAATACAAATGAGCAACTAAG
AAATATAGTCAACAACATGCAGAAACAAATAGATGCTCTGACATCATCAC
AAACCTCCTCGAAAAGACCAACCCCTCAGCAGGGCATAGATACCTCCCCT
CAGAGGGACTATTATGAAGAGGAGGATGAGGATATGGAATTTAATGAACT
TGATTTTGACGAAGAATTAGAACTATATGCCTCCCAAAATGaggattttg
aaaatgaaatagaGGAAAATACTAGCTCTAAAACTAAGGACGACACCCCT
TCTGCGGTCCCCACCAGCATCCAAGTGCAAAATGAACCATCTACAAGCAC
ACAAGATGACGATATTTTCTCTGACATAAGGATTGTCTCAACAGAAGAAG
ACAAGggggaaaaaataaaagatgacTTTGCTAGAATAATTCTTGACAGC
TACAATTCCAAGAAAGATAAGGAGAATATCAAAAAGCTCAGACAGAGCTA
CCCTCTACCTGAAAACTGCAACATACCAGTGCCTAAACTAAACGTTGAGT
TATGGCAATTACTCAACAGTTTTCAACGAAAAAGTGATGTATCCATGGCT
ATGATCCAAAGAAATCTAATTTCTGCCCTCTCTGGGGCCGAGGCCGGGGG
AGGATGTCCTCCTCCACAAACACCAACACAAAAAGAAACTAGAGCTAAAA
ACAAGTGCAACCAAGACCTCAGATGTCAAGAAATCAACCTCAGTTGTCGA
GAAATCAACCTCAGAAGTCGAAAAATNGCAGAGGCCAGGGGAGGATGTCC
TCCTCCACAAACACCAACACAAAAAGAAACTAGAGCTAAAAACAAGTGCA
ACCAAGACCTCAGATGTCAAGAAATCAACCTCAGTTGTCGAGAAATCAAC
CTCAGAagtcgaaaaaccaacctcaGAAGTTCAAGACTTATGTCAGATTC
CTCACCAGATCATAATTCAAATACAAATGAGCAACTAAGAAATATAGTCA
ACAACATGCAGAAACAAATAGATGCTCTGACATCATCACAAACCTCCTCG
AAAAGACCAACCCCTCAGCAGGGCATAGATACCTCCCCTCAGAGGGACTA
TTATGAAGAGGAGGATGAGGATATGGAATTTAATGAACTTGATTTTGACG
AAGAATTAGAACTATATGCCTCCCAAAATGaggattttgaaaatgaaata
gaGGAAAATACTAGCTCTAAAACTAAGGACGACACCCCTTCTGCGGTCCC
CACCAGCATCCAAGTGCAAAATGAACCATCTACAAGCACACAAGATGACG
ATATTTTCTCTGACATAAGGATTGTCTCAACAGAAGAAGACAAGggggaa
aaaataaaagatgacTTTGCTAGAATAATTCTTGACAGCTACAATTCCAA
GAAAGATAAGGAGAATATCAAAAAGCTCAGACAGAGCTACCCTCTACCTG
AAAACTGCAACATACCAGTGCCTAAACTAAACGTTGAGTTATGGCAATTA
CTCAACAGTTTTCAACGAAAAAGTGATGTATCCATGGCTATGATCCAAAG
AAATCTAATTTCTGCCCTCTCTGGGGCCGAGGCCGGGGGAGGATGTCCTC
CTCCACAAACACCAACACAAAAAGAAACTAGAGCTAAAAACAAGTGCAAC
CAAGACCTCAGATGTCAAGAAATCAACCTCAGTTGTCGAGAAATCAACCT
CAGAAGTCGAAAAATNGCAGAGGCCAGGGGAGGATGTCCTCCTCCACAAA
CACCAACACAAAAAGAAACTAGAGCTAAAAACAAGTGCAACCAAGACCTC
AGATGTCAAGAAATCAACCTCAGTTGTCGAGAAATCAACCTCAGAagtcg
aaaaaccaacctcaGAAGTTCAAGACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042775-exon-sc0003667-1491911889:32..764 | TCONS_00042775-exon-sc0003667-1491911889:32..764 | Clytia hemisphaerica | exon |
| TCONS_00042775-exon-sc0003667-1510915933:32..764 | TCONS_00042775-exon-sc0003667-1510915933:32..764 | Clytia hemisphaerica | exon |
| TCONS_00042775-exon-sc0003667-1575043694:32..764 | TCONS_00042775-exon-sc0003667-1575043694:32..764 | Clytia hemisphaerica | exon |
| TCONS_00042775-exon-sc0003667-1491911889:1127..1429 | TCONS_00042775-exon-sc0003667-1491911889:1127..1429 | Clytia hemisphaerica | exon |
| TCONS_00042775-exon-sc0003667-1510915933:1127..1429 | TCONS_00042775-exon-sc0003667-1510915933:1127..1429 | Clytia hemisphaerica | exon |
| TCONS_00042775-exon-sc0003667-1575043694:1127..1429 | TCONS_00042775-exon-sc0003667-1575043694:1127..1429 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003667 | supercontig | sc0003667:32..1429 + |
Blast
The following BLAST results are available for this feature:
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