TCONS_00042774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042774
Unique NameTCONS_00042774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042774 ID=TCONS_00042774|Name=TCONS_00042774|organism=Clytia hemisphaerica|type=transcript|length=802bp
tttaaaaaggcctaagtccatagccatttaattttaaaaaggcctaagtc
caaagccatttaattttaaaaaggcctaagtccaaaaGAGGTGagtttta
aaaaggcctaagtccatttttcacatttttagaaaaagccaaaaaacttt
tgttgCTTATAACTTGCTACATATCTATTTTCTACTGTCGATGTAATGTT
TTTCTGGTTTTTATGCCTAATACAAAGTTTTGTAAGCTTGCATTGGTCCA
ATATGACATTCTTATGTTGAGTGGGGCTCAAAAGTAATGATGtattggac
ttaggcctttttaaaacttaaaaagttttctaaaaatTGGACTTAGGCCC
TAGTTTGTTTTAAACAATTGGGCCTAAGTCCAACAAAAGTTCTATTAAAG
GGCCCAAGTCCACAATTTTCATTTCTGCCCTTAATTACTGTAGGAAATAA
TAAAAGTAATACGACTAGATCCTTAAATTATTTCAGAAAATTAATGGGCC
TATGTCCTAAGAAAGTTTTAtcaaagggcctaagtccacaAATAATGAAT
TTCTTCCCTTTTTTAATACTGTAGGAAATAACGATAAAATGTAATCCAAA
AGTCATCcaaaattttaacacaaaagagTTTAAAGAATGTTATGAGCCCA
TTTACCATTAATCATCACAATAGGCATGCCTAGAGTCTTGTAACATAGCC
TATAAGATAAGTTACATATAAAAGATTGTTGTTGCTAGTTAGGTTAAAAT
CAACGTTTTGcgcaatttatttttttcgttcATACTTCAAGCTTGATTAT
TG
Run BLAST on NCBI

transcript from alignment at sc0003665:13293..14094

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042774 ID=TCONS_00042774|Name=TCONS_00042774|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at sc0003665:13293..14094 (Clytia hemisphaerica)
CAATAATCAAGCTTGAAGTATgaacgaaaaaaataaattgcgCAAAACGT
TGATTTTAACCTAACTAGCAACAACAATCTTTTATATGTAACTTATCTTA
TAGGCTATGTTACAAGACTCTAGGCATGCCTATTGTGATGATTAATGGTA
AATGGGCTCATAACATTCTTTAAActcttttgtgttaaaattttgGATGA
CTTTTGGATTACATTTTATCGTTATTTCCTACAGTATTAAAAAAGGGAAG
AAATTCATTATTtgtggacttaggccctttgaTAAAACTTTCTTAGGACA
TAGGCCCATTAATTTTCTGAAATAATTTAAGGATCTAGTCGTATTACTTT
TATTATTTCCTACAGTAATTAAGGGCAGAAATGAAAATTGTGGACTTGGG
CCCTTTAATAGAACTTTTGTTGGACTTAGGCCCAATTGTTTAAAACAAAC
TAGGGCCTAAGTCCAatttttagaaaactttttaagttttaaaaaggcct
aagtccaataCATCATTACTTTTGAGCCCCACTCAACATAAGAATGTCAT
ATTGGACCAATGCAAGCTTACAAAACTTTGTATTAGGCATAAAAACCAGA
AAAACATTACATCGACAGTAGAAAATAGATATGTAGCAAGTTATAAGcaa
caaaagttttttggctttttctaaaaatgtgaaaaatggacttaggcctt
tttaaaactCACCTCttttggacttaggcctttttaaaattaaatggctt
tggacttaggcctttttaaaattaaatggctatggacttaggccttttta
aa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026573XLOC_026573Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042774-exon-sc0003665-1491911889:13293..14094TCONS_00042774-exon-sc0003665-1491911889:13293..14094Clytia hemisphaericaexon
TCONS_00042774-exon-sc0003665-1510915933:13293..14094TCONS_00042774-exon-sc0003665-1510915933:13293..14094Clytia hemisphaericaexon
TCONS_00042774-exon-sc0003665-1575043694:13293..14094TCONS_00042774-exon-sc0003665-1575043694:13293..14094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003665supercontigsc0003665:13293..14094 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0598276	0.116683	0.203219	0.331364	0.242042	0.191265	0.0769178	0.0720095	0	0.187343	0	0.0796896	0.159158	0.123965	0.0679441	0.182286	0.404211	0.0920674	0	0.0665507	0.0578447	0.0846438	0.137194	0.0623647	0	0.343965	0.246106	0.175101	0.132808	0.27062
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top