TCONS_00042770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042770
Unique NameTCONS_00042770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042770 ID=TCONS_00042770|Name=TCONS_00042770|organism=Clytia hemisphaerica|type=transcript|length=651bp
TAGAAATAGTAGTAAACATGCCAACAAAGAAGAAAGCAATCAAGAAATCt
ctgaaagaaaatttggatGATGTAGATGTCCCATGTTGTGACAGTTATCT
TACATGTCCATATGAAGCTAAAAATACACTGAAAGAACACTTGTTCAAAG
TCAACAGTGGCTTTTACATTCCTGGTATTTATGACAATCAATTGAGGCAA
CTTGAAACTGTGATAAACCAATGTGTTGAATGTGGTGAAAGCAATTCTGT
TCTCGTTATTGGACCTAGAGGAAGCGGAAAATCTAAAtTGCTTTCAAAAG
TGTTATTGGATGTTTACAACAACCATGGCAGTGATTATTTCTATGTTTAC
TTAAGTGgtTTGATACACACTGATGATCGATCAGCTCTTCAAGACCTAGC
AAGACAATTAGAACTAGAAAATGTTATTGGGGATAGAGTCTTTGGATCTT
TTGCTGATAATTTGGCCTTCATATTAGATGCACTTAAAAATGCTCCTTTC
TAAAACTATCAGAAGATTTTTCATGTAAAAAGTTCAGGGACAGATGGAAT
CGTAATTTAGATgaaaatcttTCTGAAGGTTCAGTATGTTGTGAAATACT
TTTGAAACAGTATAATCTACAAAAGGACTTTCAAAGTCTCATACGTCTCT
T
Run BLAST on NCBI

transcript from alignment at sc0003665:3242..7238-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042770 ID=TCONS_00042770|Name=TCONS_00042770|organism=Clytia hemisphaerica|type=transcript|length=3997bp|location=Sequence derived from alignment at sc0003665:3242..7238- (Clytia hemisphaerica)
TAGAAATAGTAGTAAACATGCCAACAAAGAAGAAAGCAATCAAGAAATCT
CTGAAAGAAAATTTGGATGATGTAGATGTCCCATGTTGTGACAGTTATCT
TACATGTCCATATGAAGCTAAAAATACACTGAAAGAACACTTGTTCAAAG
TCAACAGTGGCTTTTACATTCCTGGTATTTATGACAATCAATTGAGGTAA
ATATTAATTTCCATTTCCTTATTTCTAATTTTGAAAAGATTACTATACAG
GGTGTCCCCAAAAAAGTCCTTGTTAGACCACTGCAATAAGTAGGAATTTT
TTTTTCTTCTATGGGATAAACACCTTTCTATGTTTTATCTTCAATTTCTA
TTATTGCTATTTCAATTGCTTAAAGAAAGAGCTAAAAAAAGCACCAATGA
CACCTTTCTATGTGCACATCTTTTATAATATGCTGTCTTTTTGTGTCAAT
CAATAGAAATGCCTTAATTCAAATAGGAATACGTTAAAAGTTTCTTTTTC
AAATGCAATGGTAATTTTTTTTGAATCACAATAATACATCAATAAAACAA
AAACCTATAAACTTCAATTGACAATACAACATGATAATAAAAAGATACTA
TTTAGATTTTGTGATACACAAACAATTTTTTTTTCTATTTATAGAAATGG
TCTGACACAGGACTTTTTTTGGGACACCCTTTAGTACTCAGTGACAGTCT
GGTTTTTCTCTTTGAATCCTTTCAATTCCTTTGACATTTTGTCAACAACA
AAAAATTTTGTTCATATAACAAGCTTTTCAAGCATTTTAAAGCAAAGAAG
ATAAGCTTATTTTGGTAGCTCAAATATAATTTTCATTTCAGCACTTGCCA
ACATAAATTTGTGATTACTTTGATAATTTTAGGCAACTTGAAACTGTGAT
AAACCAATGTGTTGAATGTGGTGAAAGCAATTCTGTTCTCGTTATTGGAC
CTAGAGGAAGCGGAAAATCTAAAGTAAGCATTTGGCGCTACCCACCTTTT
AAGTTGATGAAATTAACAGATGGTAGTTACGAAATTGCCATTACTAAAAA
TAATAAAAGTTTAGTTTGGTTTGTCCATTAATGAAATTTATTTCATAATT
CAAATTCATGTGTTGAACGGTGGAAATGAATGCACTTATTATAATTCGAT
TTTTGGTAGTTTAAATTCGTGTTCTTTTTTAACAGAAAAGTAAAATATGA
AAAGTAAATGACTTGTCTTAAACTACTGAGGTTAAAATAAGTTTTTCTAA
TTTTAGTTGCTTTCAAAAGTGTTATTGGATGTTTACAACAACCATGGCAG
TGATTATTTCTATGTTTACTTAAGTGGTGAGTATCTTTCCTTATTATGAT
GATAAAAAGTTAAACGACATAGTTTGCATACACAGTATGTTTAAACAAAA
GTAAAAGAAACTTTATTAGCATAGGGGTGGTCCTCCTATCTTTACTATAA
ACATAATATCTTTAGGTAAAGGAACTTAGAACAATTTGAATAATAAAAAA
ACATATGTTATATGTTTACGTTTATTTCAACAATTTCAAACTATTCTTAA
TCCTATTGTTAATTTCCTACATCAATAAATTATTTTTCAGGTTTGATACA
CACTGATGATCGATCAGCTCTTCAAGACCTAGCAAGACAATTAGAACTAG
AAAATGTTATTGGGGATAGAGTCTTTGTAAGTACTGTCACTGAGTGACTC
TTGACTTTTTTTTATCAGTTAATTCCCATTCATTTGTTGTAGTGATCGAT
TGTTTTCATTTCTTTTCTCTCCAGGGATCTTTTGCTGATAATTTGGCCTT
CATATTAGATGCACTTAAAAATGGTAAGGCTTATGATTTCTTCTTCTTAA
AAGGCCATTCATTATGTCTGAGTGGAACTATATCAGCTAAGTTTAGAAAC
GCAAGGTATTGTCCAAAAGAAACCAAAGACACTTTGTCTGCTTTTATTGT
ATATCTCAACTTCAGTTGAACCTGGGGATGTCTGTCTGTCTTTATCTGTG
TGTATGCCCAAAATGCTTTGGGGCAACCTGGAGACTGTTGGCCCAATTAG
GCACACTTGGGTGTTTTTTTTTTTCAATTTTTGAAAAATTTGATTTTTCG
TGTATGGGGGTGGGGTCAATTTTTTTGCCAAAACAAGGCTGAACTTTGGG
CGACCTATAAAATGCTTCAAAAATAGATAGGTTGGGCTGAAATTTTTGGT
ACACCTGTTTTTTTGGTGAAAACCTGGGGAGTTTTTTTCATTTTTTAAAA
ATCACAATTGGGCCCTCAAATAGTTGGAATAATAGTTGAGCCCAGTGTAT
AATCCATGTTTAACTATTCTTCAAAATTTGACAAGAGCAGTGTCCAATTA
AAGATATTTTCACTTTTGTATTTCTCTTCCTTGAATTTCAGATAATGGAC
AATCAAAGTCAGTTATTTTGGTATTAGATGAATTTGATTTGTTTGCCTAC
CATAAAAACCAATCGTTACTTTACAACTTGTTTGACATTGCCCAAAGTAA
ACAAAACCCATTATGTGTCATTGGCCTGACTTGTAGACTTGATGTGGTTG
AGTTGTTGGAAAAACGAGTGAAATCAAGATATTCACACAGAGCTATATTG
ACATTTCCATCTTATAGTTTTGAAGAATATGTAGACATTGTAAGGTATAA
CAACCCATTAAATTTCATTTAATTTGAAATCATTAAAAAGTGTTTTTAAG
TTCCATGCAACTAAAAACTGAAAAATTAAGGGTGGTTTTGTGACATTTTT
TTGACTTTCTTATTTAATCCACGACATTTTTCGAATAACTTTAGAAAGAG
AGCCTGATTGTTAAGCTTTCCGATGAATAAATTATTAAAGTTTGTGGGTA
ACTAGGTATGATTTTACACGAGCTTTTTACAGGTAAAGTGTTGTGGGTTA
AAATGGCATGTGGGTTACTTCTTTACTGATCTTCTACCATTATCTTTTCT
TTTAGCTCCTTTCTAAAACTATCAGAAGATTTTTCATGTAAAAAGTTCAG
GGACAGATGGAATCGTAATTTAGATGTAAGTCATCATTGTGTTTTGCAAA
TGCAAATACAATCACTTAAGCTTGTTATATGAGAATCTAGTAATACTAAT
TTTGAAGCACCTTCTTCAAAGAGAGTGTAATTAATCGTTAATTGCATCCT
GTAGAGAGCAATTAATTGTTAATCACACTTTTCAATGCAGCACCAATGTT
TACAAAATTGATTTTAATGTTTTTTCTTACGTTTTTTTCATGGAACGTTT
TAATTGCATTTGCAAATTCATTTTTGTGAGAAAGAAAATCTATAAACAAC
AATAAAATAAAAACATAGAGAGAAGAGAAACGTATAAAACTTTCAGTGTA
ATTTACTTTCCTAACAGGGAAAAAGTACTTAGATAGACCCATTGTGCGAT
CAGCTCGTAATCACCTAGATAATAACTCGTACAATTCGAAAATAGACCTT
ATCGGAGTTTTTGATTTTTCTAAAAAAGCGATGTATTGTGGGATTGTTTC
GAGTGTATTACAATAGAAATCTCTTAGGAATTCCNAGTTTTTGATTTTTC
TAAAAAAGCGATGTATTGTGGGATTGTTTCGAGTGTATTACAATAGAAAT
CTCTTAGGAATTCCTCGAGGGAATTCTATTGTAATACACTGGAAACAATC
CCACAATGCATCGCTTTTTTAGAAAAATCAAAAACTCTGATAAGGTCTAC
TGCACTCGTAATTCTTTTTGTTTCGAATTTTCCTCGTCCTTTTGGATTTG
GAAAATTAATAACAAAAAAGATACCAATGCAATTATTCTCGCATTGCACT
CGTTATCATGTGATCACATATACTTATTTGAGAGTGTAGCAATACTAATT
TTGAAGCACCTTTGATAGATGGACTAAAAAAGCGAGAAATACTCTACTTT
ATTTTTAGGAAAATCTTTCTGAAGGTTCAGTATGTTGTGAAATACTTTTG
AAACAGTATAATCTACAAAAGGACTTTCAAAGTCTCATACGTCTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026570XLOC_026570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042770-exon-sc0003665-1575043694:7043..7238TCONS_00042770-exon-sc0003665-1575043694:7043..7238Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1575043694:6266..6356TCONS_00042770-exon-sc0003665-1575043694:6266..6356Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1575043694:5913..5982TCONS_00042770-exon-sc0003665-1575043694:5913..5982Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1575043694:5563..5648TCONS_00042770-exon-sc0003665-1575043694:5563..5648Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1575043694:5416..5464TCONS_00042770-exon-sc0003665-1575043694:5416..5464Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1575043694:4214..4283TCONS_00042770-exon-sc0003665-1575043694:4214..4283Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1575043694:3242..3330TCONS_00042770-exon-sc0003665-1575043694:3242..3330Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1510915933:7043..7238TCONS_00042770-exon-sc0003665-1510915933:7043..7238Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1510915933:6266..6356TCONS_00042770-exon-sc0003665-1510915933:6266..6356Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1510915933:5913..5982TCONS_00042770-exon-sc0003665-1510915933:5913..5982Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1510915933:5563..5648TCONS_00042770-exon-sc0003665-1510915933:5563..5648Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1510915933:5416..5464TCONS_00042770-exon-sc0003665-1510915933:5416..5464Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1510915933:4214..4283TCONS_00042770-exon-sc0003665-1510915933:4214..4283Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1510915933:3242..3330TCONS_00042770-exon-sc0003665-1510915933:3242..3330Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1491911889:7043..7238TCONS_00042770-exon-sc0003665-1491911889:7043..7238Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1491911889:6266..6356TCONS_00042770-exon-sc0003665-1491911889:6266..6356Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1491911889:5913..5982TCONS_00042770-exon-sc0003665-1491911889:5913..5982Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1491911889:5563..5648TCONS_00042770-exon-sc0003665-1491911889:5563..5648Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1491911889:5416..5464TCONS_00042770-exon-sc0003665-1491911889:5416..5464Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1491911889:4214..4283TCONS_00042770-exon-sc0003665-1491911889:4214..4283Clytia hemisphaericaexon
TCONS_00042770-exon-sc0003665-1491911889:3242..3330TCONS_00042770-exon-sc0003665-1491911889:3242..3330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003665supercontigsc0003665:3242..7238 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27203	3.86996	5.17915	3.52561	0.850886	0.537436	0.243575	0.372988	1.41876	0.60396	0.610014	0.286153	0	0.677235	0.97722	0.33465	0.262613	0.402264	0.923701	0.0828202	0.0908181	0.605321	4.22186	3.14149	0.125167	0.189506	1.09873	0.13268	1.36757	2.21894
Blast
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BLAST of TCONS_00042770 vs. Swiss-Prot (Human)
Match: ORC4 (Origin recognition complex subunit 4 OS=Homo sapiens GN=ORC4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.130e-18
Identity = 52/130 (40.00%), Postives = 84/130 (64.62%), Query Frame = 3 
Query:  105 CPYEAKNTLKEHLFKVNSGFYIPGIYDNQLRQLETVINQCVECGESNSVLVIGPRXXXXXXXXXXXXXDVYNNH--GSDYFYVYLSGLIHTDDRSALQDLARQLELENVIGDRVFGSFADNLAFILDALK 488
            C  + +  L+E   + +    + G+   Q + L  ++ +    GESNSVL+IGPRGSGK+ L++  L ++        +   V+L+GL+  +D+ AL+++ RQL LENV+GD+VFGSFA+NL+F+L+ALK
Sbjct:   16 CLSQVQRILRERFCRQSPHSNLFGV-QVQYKHLSELLKRTALHGESNSVLIIGPRGSGKTMLINHALKELMEIEEVSENVLQVHLNGLLQINDKIALKEITRQLNLENVVGDKVFGSFAENLSFLLEALK 144
The following BLAST results are available for this feature:
BLAST of TCONS_00042770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ORC41.130e-1840.00Origin recognition complex subunit 4 OS=Homo sapie... [more]
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