TCONS_00042765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042765
Unique NameTCONS_00042765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042765 ID=TCONS_00042765|Name=TCONS_00042765|organism=Clytia hemisphaerica|type=transcript|length=1828bp
TTTCAGAacaaaaaaatactcaaaaaattgaagtaaaaaaagtaaagaaa
acaaaaaaaaattatagcacAGTTGAAAAATGGATTTCCCGCAAGCAATT
GTTGCAATCGTTATGTTGGCAGTTTGTGTCTTGCTCGGATTGCCAGTCTG
GTGGAACACTACCAAAGTTTATCGGGCATCCCTTCCACAttctaaaattg
aagaattaaGTCAACTACGATGGAAAGCTGTTGTATCGGTCAATCTTATT
GCGGAAGGCAAGGATATTTGGTATGACACTATCAAATCAGAAGCAGATTT
TGATAATGAATCGTTTGAATTTACATTTACACAAATTGAAGCTAGGTTAG
AGCGCTCAAATCTGGATTTAGAAAATATGTGTGGACAACTTGATGCTCTG
GAAGGGAAATCCACCCTAGCGGTCAATATGTTGATCTTGAATTCAAAAGA
CGAagagttttcttatttttgtcaaTCCGGGTTTTCTTACATAATATCTG
CAACTAAAGAACAAACAGCAAGTTCTATCTTGTCCGTGTTGAAAGTGATG
TTCCCTATTGGTGATGTGAACTTGTCGGGTGTTAAATCAAAAACCAAAAC
ATCTCAATCCTTGCCCTTGTCCACTGGTTATGACATGGTGTTCACTTTAG
CTGTCGGTGAATCTTCTGCTTCTCAATCATTTTGGGATATTGAAGATTCA
ATCAAATCTTTGCTAAATCCATTTTTAAAGAAGTTGGAGTTTCTTGGACC
GTTCCACGTTTCATCTCAGGTTTTGTATCATGCGGATGTTGGCATCGAAC
CGAAGTTTTTGTCTGGTGAAAACAATAATACTTTTCATTATTACACCAAA
CAAAAGATCTCTTTGATCATGAATCCTTTAGAATCAACACTTAACACCTA
TACTTCAACTGATGCTGGCATCAACTTCATCATCTACGTTCCTCCTCAAA
AACATTCTCCTCTTTTCATTAAGAATGCAAATTCCGCGAAAAATAAAGCC
TTTCACAGCCCACGTTGGGGAGGATTACAAATACATAATCCCACATCTTA
TGATAGTCTTGATATCGAGACAAGGGAGCacatgaaaatatttatgaATC
AAATACAACAGTTGAATGGAGTTGATCCTGAGACGTCTACAaaatatttt
cctaaaaatcaaCCAAGTCTTGTTGCCGAGCCAATTCTGAATCGTCTTAA
ACTCTCGTTTCTGCTGAAACGTTTGAAGACAAGTATCTTTACATTATCAT
CACTATCCAAACTTCTTGATGAAATTGCCAACATCGTTATTCGTGATGAT
ATCAAAGACCTGATTGAAATTGCTGTTGATAGTATTGAGAAGTCTATTAA
GAGTTTACAAACAGGCGACATTGAGGCTGCCTTAAGTTACTCAAAGAAAG
CTTACGAATGCTCAGAGAAAGCTTTCTTCGATTGGTCACTCCTTGCTCTG
TTATACTTCCCAGACGACCAAAAGTATGCAATATATGTTCCACTGTTTTT
ACCTATTTCGTTGccgatatttttatcatttttcaatGCTGTGAAACTCC
TCAGATCCAAGAAATAATTAATTGAAGTAATTAATAGATTGTCCTTAATA
TTTCATTCTAGAATTTTGCTAATCtgtttttttgtaaagaataTGACAGG
GACGTTCTTTATCTAATATGTGATGTATGTGATGTATTATTGAGctttgt
taaccggttacttacatttctcagtacagccctcactaaccggtcattat
tgtattaataatAGGTACTACATATTGTTTGAATCAGTCGGTCCATTTTT
CGCATAATTTTGtcatttcttacaaaaa
Run BLAST on NCBI

transcript from alignment at sc0003662:4973..6800+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042765 ID=TCONS_00042765|Name=TCONS_00042765|organism=Clytia hemisphaerica|type=transcript|length=1828bp|location=Sequence derived from alignment at sc0003662:4973..6800+ (Clytia hemisphaerica)
TTTCAGAacaaaaaaatactcaaaaaattgaagtaaaaaaagtaaagaaa
acaaaaaaaaattatagcacAGTTGAAAAATGGATTTCCCGCAAGCAATT
GTTGCAATCGTTATGTTGGCAGTTTGTGTCTTGCTCGGATTGCCAGTCTG
GTGGAACACTACCAAAGTTTATCGGGCATCCCTTCCACAttctaaaattg
aagaattaaGTCAACTACGATGGAAAGCTGTTGTATCGGTCAATCTTATT
GCGGAAGGCAAGGATATTTGGTATGACACTATCAAATCAGAAGCAGATTT
TGATAATGAATCGTTTGAATTTACATTTACACAAATTGAAGCTAGGTTAG
AGCGCTCAAATCTGGATTTAGAAAATATGTGTGGACAACTTGATGCTCTG
GAAGGGAAATCCACCCTAGCGGTCAATATGTTGATCTTGAATTCAAAAGA
CGAagagttttcttatttttgtcaaTCCGGGTTTTCTTACATAATATCTG
CAACTAAAGAACAAACAGCAAGTTCTATCTTGTCCGTGTTGAAAGTGATG
TTCCCTATTGGTGATGTGAACTTGTCGGGTGTTAAATCAAAAACCAAAAC
ATCTCAATCCTTGCCCTTGTCCACTGGTTATGACATGGTGTTCACTTTAG
CTGTCGGTGAATCTTCTGCTTCTCAATCATTTTGGGATATTGAAGATTCA
ATCAAATCTTTGCTAAATCCATTTTTAAAGAAGTTGGAGTTTCTTGGACC
GTTCCACGTTTCATCTCAGGTTTTGTATCATGCGGATGTTGGCATCGAAC
CGAAGTTTTTGTCTGGTGAAAACAATAATACTTTTCATTATTACACCAAA
CAAAAGATCTCTTTGATCATGAATCCTTTAGAATCAACACTTAACACCTA
TACTTCAACTGATGCTGGCATCAACTTCATCATCTACGTTCCTCCTCAAA
AACATTCTCCTCTTTTCATTAAGAATGCAAATTCCGCGAAAAATAAAGCC
TTTCACAGCCCACGTTGGGGAGGATTACAAATACATAATCCCACATCTTA
TGATAGTCTTGATATCGAGACAAGGGAGCacatgaaaatatttatgaATC
AAATACAACAGTTGAATGGAGTTGATCCTGAGACGTCTACAaaatatttt
cctaaaaatcaaCCAAGTCTTGTTGCCGAGCCAATTCTGAATCGTCTTAA
ACTCTCGTTTCTGCTGAAACGTTTGAAGACAAGTATCTTTACATTATCAT
CACTATCCAAACTTCTTGATGAAATTGCCAACATCGTTATTCGTGATGAT
ATCAAAGACCTGATTGAAATTGCTGTTGATAGTATTGAGAAGTCTATTAA
GAGTTTACAAACAGGCGACATTGAGGCTGCCTTAAGTTACTCAAAGAAAG
CTTACGAATGCTCAGAGAAAGCTTTCTTCGATTGGTCACTCCTTGCTCTG
TTATACTTCCCAGACGACCAAAAGTATGCAATATATGTTCCACTGTTTTT
ACCTATTTCGTTGccgatatttttatcatttttcaatGCTGTGAAACTCC
TCAGATCCAAGAAATAATTAATTGAAGTAATTAATAGATTGTCCTTAATA
TTTCATTCTAGAATTTTGCTAATCtgtttttttgtaaagaataTGACAGG
GACGTTCTTTATCTAATATGTGATGTATGTGATGTATTATTGAGctttgt
taaccggttacttacatttctcagtacagccctcactaaccggtcattat
tgtattaataatAGGTACTACATATTGTTTGAATCAGTCGGTCCATTTTT
CGCATAATTTTGtcatttcttacaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026566XLOC_026566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042765-exon-sc0003662-1491911889:4973..6800TCONS_00042765-exon-sc0003662-1491911889:4973..6800Clytia hemisphaericaexon
TCONS_00042765-exon-sc0003662-1510915933:4973..6800TCONS_00042765-exon-sc0003662-1510915933:4973..6800Clytia hemisphaericaexon
TCONS_00042765-exon-sc0003662-1575043694:4973..6800TCONS_00042765-exon-sc0003662-1575043694:4973..6800Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003662supercontigsc0003662:4973..6800 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
94.6233	86.5378	59.7167	63.1259	13.5956	11.237	14.733	15.0059	7.84975	6.88959	10.0109	5.64101	6.46974	8.25712	6.17956	4.20179	15.4317	7.94437	3.47913	5.03927	7.95228	7.54939	41.9272	32.3047	11.7204	9.38728	2.94222	5.4704	17.9956	23.867
Blast
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BLAST of TCONS_00042765 vs. Swiss-Prot (Human)
Match: PIGS (GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 7.681e-58
Identity = 163/520 (31.35%), Postives = 271/520 (52.12%), Query Frame = 2 
Query:  104 AIVMLAVCVLLGLPVWWNTTKVYRASLPHSKIEELSQLRWKAVVSVNLIAEGKDIWYDTIKSEADFDNESFEFTFT-----------QIEARLE---RSNLDLENMC----------GQLDALEGKSTLAVNMLILNSKDEEFSYFCQSGFSYI-------ISATKEQTA-----SSILSVLKVMFPIGDV-------NLSGVKSKTKTSQSLPLSTGYDMVFTLAVGESSASQSFWDIEDSIKSLLNPFLKKLEFLGPFHVSSQVLYHADVGIEPKFLSGENNNTFHYYTKQKISLIMNPLESTL-NTYTSTDAGINFIIYVPPQKHSPLFIKNANSA--KNKAFHSPRWGGLQIHNPTS--YDS------LDIETREHMKIFMNQIQQLNGV-DPETSTKYF---PKNQPSLVAEPIXXXXXXXXXXXXXXTSIFTLSSLSKLLDEIANIVIRDDIKDLIEIAVDSIEKSIKSLQTGDIEAALSYSKKAYECSEKAFFDWSLLALLYFPDDQKYAIYV 1489
            A+   AV ++LGLP+WW TT+ YRASLP+S+I  L+ L+ + +V V ++   + +  D        D E   FT             +I+ R +   R  LD E               LD  + ++  ++ + +++   E  S   Q   SYI       +     + A       I+ V + M    DV       +L   K   +  + L  S GY++ F+L   +  +   +WDIE +++  + PFL  L   G F V SQ+LY+A +G+ P+F S  ++   +Y     +  ++NP+ES L ++  S    +NF++YVP   HSPL+I++ + A     AFHSPRWGG+ ++N  S  Y++      ++++    M++F+ Q++ L G+  P+   K     P ++  +  E  L+RL  +  ++ L T+  TL+SL++LL +I+NIVI+DD+   +  AV +++KS + L +G + +A   S++A   SE AFFD SLL LLYFPDDQK+AIY+
Sbjct:   20 ALFFAAVAIVLGLPLWWKTTETYRASLPYSQISGLNALQLRLMVPVTVVFTRESVPLD--------DQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALDHEEEALSSGSVQEAEAMLDEPQEQAEGSLTVYVIS---EHSSLLPQDMMSYIGPKRTAVVRGIMHREAFNIIGRRIVQVAQAMSLTEDVLAAALADHLPEDKWSAEKRRPLKSSLGYEITFSLLNPDPKSHDVYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAMLGVNPRFDSASSS---YYLDMHSLPHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIMVYNVDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSGPTSEGLMTWE--LDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELASGHLASAFVASQEAVTSSELAFFDPSLLHLLYFPDDQKFAIYI 523
The following BLAST results are available for this feature:
BLAST of TCONS_00042765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIGS7.681e-5831.35GPI transamidase component PIG-S OS=Homo sapiens G... [more]
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