TCONS_00042764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042764
Unique NameTCONS_00042764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042764 ID=TCONS_00042764|Name=TCONS_00042764|organism=Clytia hemisphaerica|type=transcript|length=761bp
NNCACAAAATATATATGTGCATGTTAGCGTTTCAAGTGCCCCATAAAAGC
AAGAGATTGGTTTTGGTCGGAGATATTGACAGTGGAAAGACATCAGTGAT
GAACATGTTTTTCGGTCTTATTCCTGAGCAAAAGATTGCCACAGTTACCA
AAGAGCGTGTTTTTGGTTTGTCAATGATAAAGTCTGACACGGAGCTGTTG
ATAATTGATGAATGGACCAAGGATATGACATCTGCAGACATGGTAAAGGT
TTTATTCCAAGGAGGACGATTTCCGCAATCAGTGAAATTTGAGGATCCAA
AATTACAAGAAATGAATGCTGGGGTGTTCATTACCTGCAACCATGTTCCC
AAATTTCCAAAGAAGGATAAAAAGTCTGTACTCAGAAGAATTGCCGATGT
CAATACACGTGAGCTGGAGGTACTATGCCCAGAAGCACCTGAGTGGATTC
GCAAAAACGCAATGCATTGTTTGAAGTATTTAATTGACATGATAAACAAC
AACCTCGACGTTATCGATCAGAGTGAATTGTCCTACACCCTACCACAGAA
TGTGCGTTGTGAATCGACTATTCTTGAGGATGAGGTAGAAAAAGAAGAAC
TGAATCGAATCTGAGATTGTGTCGTTGAAGCAGATGACTCTGTCCCTTTG
GTCGACTCGTCAACAAAAGAGCTAGAAGTCTTTCATGTAGATGAGGATGT
TGATGAGGTTTTAGAAAGCGGTGGGTACTACTTCCTTACTAACTCTCCAC
ACAGAACTTCT
Run BLAST on NCBI

protein sequence of TCONS_00042764-protein

>TCONS_00042764-protein ID=TCONS_00042764-protein|Name=TCONS_00042764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
HKIYMCMLAFQVPHKSKRLVLVGDIDSGKTSVMNMFFGLIPEQKIATVTK
ERVFGLSMIKSDTELLIIDEWTKDMTSADMVKVLFQGGRFPQSVKFEDPK
LQEMNAGVFITCNHVPKFPKKDKKSVLRRIADVNTRELEVLCPEAPEWIR
KNAMHCLKYLIDMINNNLDVIDQSELSYTLPQNVRCESTILEDEVEKEEL
NRI
Run BLAST on NCBI

transcript from alignment at sc0003661:16..776

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042764 ID=TCONS_00042764|Name=TCONS_00042764|organism=Clytia hemisphaerica|type=transcript|length=761bp|location=Sequence derived from alignment at sc0003661:16..776 (Clytia hemisphaerica)
AGAAGTTCTGTGTGGAGAGTTAGTAAGGAAGTAGTACCCACCGCTTTCTA
AAACCTCATCAACATCCTCATCTACATGAAAGACTTCTAGCTCTTTTGTT
GACGAGTCGACCAAAGGGACAGAGTCATCTGCTTCAACGACACAATCTCA
GATTCGATTCAGTTCTTCTTTTTCTACCTCATCCTCAAGAATAGTCGATT
CACAACGCACATTCTGTGGTAGGGTGTAGGACAATTCACTCTGATCGATA
ACGTCGAGGTTGTTGTTTATCATGTCAATTAAATACTTCAAACAATGCAT
TGCGTTTTTGCGAATCCACTCAGGTGCTTCTGGGCATAGTACCTCCAGCT
CACGTGTATTGACATCGGCAATTCTTCTGAGTACAGACTTTTTATCCTTC
TTTGGAAATTTGGGAACATGGTTGCAGGTAATGAACACCCCAGCATTCAT
TTCTTGTAATTTTGGATCCTCAAATTTCACTGATTGCGGAAATCGTCCTC
CTTGGAATAAAACCTTTACCATGTCTGCAGATGTCATATCCTTGGTCCAT
TCATCAATTATCAACAGCTCCGTGTCAGACTTTATCATTGACAAACCAAA
AACACGCTCTTTGGTAACTGTGGCAATCTTTTGCTCAGGAATAAGACCGA
AAAACATGTTCATCACTGATGTCTTTCCACTGTCAATATCTCCGACCAAA
ACCAATCTCTTGCTTTTATGGGGCACTTGAAACGCTAACATGCACATATA
TATTTTGTGNN

Coding sequence (CDS) from alignment at sc0003661:16..776

>TCONS_00042764 ID=TCONS_00042764|Name=TCONS_00042764|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0003661:16..776 (Clytia hemisphaerica)
TCAGATTCGATTCAGTTCTTCTTTTTCTACCTCATCCTCAAGAATAGTCG
ATTCACAACGCACATTCTGTGGTAGGGTGTAGGACAATTCACTCTGATCG
ATAACGTCGAGGTTGTTGTTTATCATGTCAATTAAATACTTCAAACAATG
CATTGCGTTTTTGCGAATCCACTCAGGTGCTTCTGGGCATAGTACCTCCA
GCTCACGTGTATTGACATCGGCAATTCTTCTGAGTACAGACTTTTTATCC
TTCTTTGGAAATTTGGGAACATGGTTGCAGGTAATGAACACCCCAGCATT
CATTTCTTGTAATTTTGGATCCTCAAATTTCACTGATTGCGGAAATCGTC
CTCCTTGGAATAAAACCTTTACCATGTCTGCAGATGTCATATCCTTGGTC
CATTCATCAATTATCAACAGCTCCGTGTCAGACTTTATCATTGACAAACC
AAAAACACGCTCTTTGGTAACTGTGGCAATCTTTTGCTCAGGAATAAGAC
CGAAAAACATGTTCATCACTGATGTCTTTCCACTGTCAATATCTCCGACC
AAAACCAATCTCTTGCTTTTATGGGGCACTTGAAACGCTAACATGCACAT
ATATATTTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026565XLOC_026565Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042764-proteinTCONS_00042764-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042764-exon-sc0003661-1491911889:16..776TCONS_00042764-exon-sc0003661-1491911889:16..776Clytia hemisphaericaexon
TCONS_00042764-exon-sc0003661-1510915933:16..776TCONS_00042764-exon-sc0003661-1510915933:16..776Clytia hemisphaericaexon
TCONS_00042764-exon-sc0003661-1575043694:16..776TCONS_00042764-exon-sc0003661-1575043694:16..776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003661supercontigsc0003661:16..776 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.27783	4.07385	0.946026	0.498367	0.780061	0.753395	2.80945	2.63017	1.51648	2.68344	1.17208	2.26863	2.77841	3.95079	0.729907	1.52744	0.916716	1.82976	0.614896	1.85884	0.807834	1.36396	1.69492	2.27789	1.3111	2.46342	0.440643	0.28216	0.499353	0.363401
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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