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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042763 ID=TCONS_00042763|Name=TCONS_00042763|organism=Clytia hemisphaerica|type=transcript|length=399bp
ATATTCTTAACAAAAAAGAGAACTATCATTGTGTAGTTCTCCATTTGAGT
GGGACAAAAAGGGTGGCTGTCGACAGCTACGCGACACCTGGCTTTGCGCA
CGACTTTATGACAGGGCTCAGCGTGGAGTCAAGTAAGTTTGGAGATGTCA
TCAAGGACACATTCAAAACGGCGTATAAACAATTCTTAAAGAAACAAGAA
CAACCGGAAGCTGAAAATGCAGACCCTCCTGAAGGTTCAACATTTTCCGA
AAATTACGAGGCACCAGAAAAGTTACAAACTCCAAAGCCAGCTGCTCCCG
AATCAACAGTAACTGTTGAATCAACAGTTGAAGGTTCAACAATTTCCGAC
AATCACCAGCTTTCAGAAAATTTACAAGCTCTAAATCCAGTTGCACCTG Run BLAST on NCBI protein sequence of TCONS_00042763-protein >TCONS_00042763-protein ID=TCONS_00042763-protein|Name=TCONS_00042763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
ILNKKENYHCVVLHLSGTKRVAVDSYATPGFAHDFMTGLSVESSKFGDVI
KDTFKTAYKQFLKKQEQPEAENADPPEGSTFSENYEAPEKLQTPKPAAPE
STVTVESTVEGSTISDNHQLSENLQALNPVAP Run BLAST on NCBI transcript from alignment at sc0003661:6538..7629+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042763 ID=TCONS_00042763|Name=TCONS_00042763|organism=Clytia hemisphaerica|type=transcript|length=1092bp|location=Sequence derived from alignment at sc0003661:6538..7629+ (Clytia hemisphaerica)
ATATTCTTAACAAAAAAGAGAACTATCATTGTGTAGTTCTCCATTTGAGT
GGGACAAAAAGGGTGGCTGTCGACAGCTACGCGACACCTGGCTTTGCGCA
CGACTTTATGACAGGGCTCAGCGTGGAGTCAAGTAAGTTTGGAGATGTCA
TCAAGGACACATTCAAAACGGCGTATAAACGTAAATAGTTTTACCCTACA
TCCACTTATTATATGCTTTGGGGTTTTTGATAAGGAGTTTACTAGTTTAT
GCTTTATAGAGAACTTCTAGTGAGATTTTGACCTGGGGCCAGTCTGTTTC
TAGGATCAGTGATCGTCTTAATGGGGGAGTCCGCTTTAGACCATGCTTGA
TTTACCTTTGATGTCATTTATTTTAGAATTCTTAAAGAAACAAGAACAAC
CGGAAGCTGAAAATGCAGACCCTCCTGAAGgtaaaacaataaaacatttt
tatgcACAATAAGTTTAACAAAGTTTTTAACTACACTGTCAAttgtataa
aaaaaacatagctcagaaatgagaaaactttaaataaaaataaggaTATA
ATTGGCATCAGTTGGCttgcaaaatctaaatttttgtcaACCAGTAGTTG
AAGGTACACTCCTTATTAACTTTTTTAGAATCTGATACATCACTTGATAA
TAACTTAAAATGATGATAACTTTTACATTTATGAAGGTTTTTTTTCTGTC
TTTaactaaaaaatcatttttttaaatattttatgatttttgtagGTTCA
ACATTTTCCGAAAATTACGAGGCACCAGAAAAGTTACAAACTCCAAAGCC
AGCTGCTCCCGAATCAACAGTAACTGTTGAATCAACAGTTGAAGGTATTC
CTTAAAGCTTTTTCAGGATCTGTTActaataattcaaattcaaaataaat
tcaaGTACTTCTGCATTTTATGAATTAGGTTTTCGTTAAACATAATTTGC
AtgaattaaagtttttcaggaaaaaatatCTGTcgaaaaagaataatttt
tctatcatattttataatttttgtagGTTCAACAATTTCCGACAATCACC
AGCTTTCAGAAAATTTACAAGCTCTAAATCCAGTTGCACCTG Coding sequence (CDS) from alignment at sc0003661:6538..7629+ >TCONS_00042763 ID=TCONS_00042763|Name=TCONS_00042763|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0003661:6538..7629+ (Clytia hemisphaerica)
ATTCTTAACAAAAAAGAGAACTATCATTGTGTAGTTCTCCATTTGAGTGG
GACAAAAAGGGTGGCTGTCGACAGCTACGCGACACCTGGCTTTGCGCACG
ACTTTATGACAGGGCTCAGCGTGGAGTCAAGTAAGTTTGGAGATGTCATC
AAGGACACATTCAAAACGGCGTATAAACAATTCTTAAAGAAACAAGAACA
ACCGGAAGCTGAAAATGCAGACCCTCCTGAAGGTTCAACATTTTCCGAAA
ATTACGAGGCACCAGAAAAGTTACAAACTCCAAAGCCAGCTGCTCCCGAA
TCAACAGTAACTGTTGAATCAACAGTTGAAGGTTCAACAATTTCCGACAA
TCACCAGCTTTCAGAAAATTTACAAGCTCTAAATCCAGTTGCACCTATTC
TTAACAAAAAAGAGAACTATCATTGTGTAGTTCTCCATTTGAGTGGGACA
AAAAGGGTGGCTGTCGACAGCTACGCGACACCTGGCTTTGCGCACGACTT
TATGACAGGGCTCAGCGTGGAGTCAAGTAAGTTTGGAGATGTCATCAAGG
ACACATTCAAAACGGCGTATAAACAATTCTTAAAGAAACAAGAACAACCG
GAAGCTGAAAATGCAGACCCTCCTGAAGGTTCAACATTTTCCGAAAATTA
CGAGGCACCAGAAAAGTTACAAACTCCAAAGCCAGCTGCTCCCGAATCAA
CAGTAACTGTTGAATCAACAGTTGAAGGTTCAACAATTTCCGACAATCAC
CAGCTTTCAGAAAATTTACAAGCTCTAAATCCAGTTGCACCTATTCTTAA
CAAAAAAGAGAACTATCATTGTGTAGTTCTCCATTTGAGTGGGACAAAAA
GGGTGGCTGTCGACAGCTACGCGACACCTGGCTTTGCGCACGACTTTATG
ACAGGGCTCAGCGTGGAGTCAAGTAAGTTTGGAGATGTCATCAAGGACAC
ATTCAAAACGGCGTATAAACAATTCTTAAAGAAACAAGAACAACCGGAAG
CTGAAAATGCAGACCCTCCTGAAGGTTCAACATTTTCCGAAAATTACGAG
GCACCAGAAAAGTTACAAACTCCAAAGCCAGCTGCTCCCGAATCAACAGT
AACTGTTGAATCAACAGTTGAAGGTTCAACAATTTCCGACAATCACCAGC
TTTCAGAAAATTTACAAGCTCTAAATCCAGTTGCACCTATTCTTAACAAA
AAAGAGAACTATCATTGTGTAGTTCTCCATTTGAGTGGGACAAAAAGGGT
GGCTGTCGACAGCTACGCGACACCTGGCTTTGCGCACGACTTTATGACAG
GGCTCAGCGTGGAGTCAAGTAAGTTTGGAGATGTCATCAAGGACACATTC
AAAACGGCGTATAAACAATTCTTAAAGAAACAAGAACAACCGGAAGCTGA
AAATGCAGACCCTCCTGAAGGTTCAACATTTTCCGAAAATTACGAGGCAC
CAGAAAAGTTACAAACTCCAAAGCCAGCTGCTCCCGAATCAACAGTAACT
GTTGAATCAACAGTTGAAGGTTCAACAATTTCCGACAATCACCAGCTTTC
AGAAAATTTACAAGCTCTAAATCCAGTTGCACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042763-exon-sc0003661-1491911889:6538..6717 | TCONS_00042763-exon-sc0003661-1491911889:6538..6717 | Clytia hemisphaerica | exon |
| TCONS_00042763-exon-sc0003661-1510915933:6538..6717 | TCONS_00042763-exon-sc0003661-1510915933:6538..6717 | Clytia hemisphaerica | exon |
| TCONS_00042763-exon-sc0003661-1575043694:6538..6717 | TCONS_00042763-exon-sc0003661-1575043694:6538..6717 | Clytia hemisphaerica | exon |
| TCONS_00042763-exon-sc0003661-1491911889:6914..6967 | TCONS_00042763-exon-sc0003661-1491911889:6914..6967 | Clytia hemisphaerica | exon |
| TCONS_00042763-exon-sc0003661-1510915933:6914..6967 | TCONS_00042763-exon-sc0003661-1510915933:6914..6967 | Clytia hemisphaerica | exon |
| TCONS_00042763-exon-sc0003661-1575043694:6914..6967 | TCONS_00042763-exon-sc0003661-1575043694:6914..6967 | Clytia hemisphaerica | exon |
| TCONS_00042763-exon-sc0003661-1491911889:7283..7381 | TCONS_00042763-exon-sc0003661-1491911889:7283..7381 | Clytia hemisphaerica | exon |
| TCONS_00042763-exon-sc0003661-1510915933:7283..7381 | TCONS_00042763-exon-sc0003661-1510915933:7283..7381 | Clytia hemisphaerica | exon |
| TCONS_00042763-exon-sc0003661-1575043694:7283..7381 | TCONS_00042763-exon-sc0003661-1575043694:7283..7381 | Clytia hemisphaerica | exon |
| TCONS_00042763-exon-sc0003661-1491911889:7564..7629 | TCONS_00042763-exon-sc0003661-1491911889:7564..7629 | Clytia hemisphaerica | exon |
| TCONS_00042763-exon-sc0003661-1510915933:7564..7629 | TCONS_00042763-exon-sc0003661-1510915933:7564..7629 | Clytia hemisphaerica | exon |
| TCONS_00042763-exon-sc0003661-1575043694:7564..7629 | TCONS_00042763-exon-sc0003661-1575043694:7564..7629 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003661 | supercontig | sc0003661:6538..7629 + |
Blast
The following BLAST results are available for this feature:
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