TCONS_00042761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042761
Unique NameTCONS_00042761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042761 ID=TCONS_00042761|Name=TCONS_00042761|organism=Clytia hemisphaerica|type=transcript|length=733bp
TTGAGGAACTACAAATCTCGATACGAGTCAAGTAAAGATGAATCTGAAAA
GTTGAAATTACAATCAAAGTTGAACTTATTCAAAAAGAAGTATCAGGCAG
CCCTATCCATTTTAAATTCAAACATCACTCCGAAACGTCCTCGAAGAAAA
TTGTATAAACACTCTCCTGTGAAGAAacgaaaaacaacacaaaatttGGT
TCCAAAGTCTTCACCAGCTCTTACATCACCCACGATAATTCAagcatcat
catcatcaacagTTCTATCGTCGCAACCCCATCCAGAACGAGATATAAAT
GAACTTTCAGATTTGGTTGAGCAGCAGAAGAAGGAATTGGAAAaacagaa
atcaaaaatcaaggaGCTAGAGtttcagattttaaaacaaCAGGGTATTA
TTAGCTACCTCGAAAAGAACTCATTTACGTACAAGAATTTAGCTGAAAAA
CCCAAAACATTCAAACTACTTTGTGGACTTTTAGTAGATGAATTTAATAT
GCTAATGGAGTGTGTCAGACCTTACTTGTCATTATTTGACAAACTGAGAC
ACCCCAAAATATTTGGATGGGAAACTCAATACTTAGCAACAATGACAATC
TGTCGTCACTCATTGAATTTTGATTTCATGTCCTTTGTTATTGGAACCTC
TGCTACAACTATGCAAAGAATTGGAAACAATTGGATCATCTTTCTTGCAA
CAGTTTTTAACAGGATTGAATTGAAACCTGAGC
Run BLAST on NCBI

protein sequence of TCONS_00042761-protein

>TCONS_00042761-protein ID=TCONS_00042761-protein|Name=TCONS_00042761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
LRNYKSRYESSKDESEKLKLQSKLNLFKKKYQAALSILNSNITPKRPRRK
LYKHSPVKKRKTTQNLVPKSSPALTSPTIIQASSSSTVLSSQPHPERDIN
ELSDLVEQQKKELEKQKSKIKELEFQILKQQGIISYLEKNSFTYKNLAEK
PKTFKLLCGLLVDEFNMLMECVRPYLSLFDKLRHPKIFGWETQYLATMTI
CRHSLNFDFMSFVIGTSATTMQRIGNNWIIFLATVFNRIELKPE
Run BLAST on NCBI

transcript from alignment at sc0003657:1061..1793

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042761 ID=TCONS_00042761|Name=TCONS_00042761|organism=Clytia hemisphaerica|type=transcript|length=733bp|location=Sequence derived from alignment at sc0003657:1061..1793 (Clytia hemisphaerica)
GCTCAGGTTTCAATTCAATCCTGTTAAAAACTGTTGCAAGAAAGATGATC
CAATTGTTTCCAATTCTTTGCATAGTTGTAGCAGAGGTTCCAATAACAAA
GGACATGAAATCAAAATTCAATGAGTGACGACAGATTGTCATTGTTGCTA
AGTATTGAGTTTCCCATCCAAATATTTTGGGGTGTCTCAGTTTGTCAAAT
AATGACAAGTAAGGTCTGACACACTCCATTAGCATATTAAATTCATCTAC
TAAAAGTCCACAAAGTAGTTTGAATGTTTTGGGTTTTTCAGCTAAATTCT
TGTACGTAAATGAGTTCTTTTCGAGGTAGCTAATAATACCCTGttgtttt
aaaatctgaaaCTCTAGCtccttgatttttgatttctgttTTTCCAATTC
CTTCTTCTGCTGCTCAACCAAATCTGAAAGTTCATTTATATCTCGTTCTG
GATGGGGTTGCGACGATAGAActgttgatgatgatgatgctTGAATTATC
GTGGGTGATGTAAGAGCTGGTGAAGACTTTGGAACCaaattttgtgttgt
ttttcgtTTCTTCACAGGAGAGTGTTTATACAATTTTCTTCGAGGACGTT
TCGGAGTGATGTTTGAATTTAAAATGGATAGGGCTGCCTGATACTTCTTT
TTGAATAAGTTCAACTTTGATTGTAATTTCAACTTTTCAGATTCATCTTT
ACTTGACTCGTATCGAGATTTGTAGTTCCTCAA

Coding sequence (CDS) from alignment at sc0003657:1061..1793

>TCONS_00042761 ID=TCONS_00042761|Name=TCONS_00042761|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0003657:1061..1793 (Clytia hemisphaerica)
CTCAGGTTTCAATTCAATCCTGTTAAAAACTGTTGCAAGAAAGATGATCC
AATTGTTTCCAATTCTTTGCATAGTTGTAGCAGAGGTTCCAATAACAAAG
GACATGAAATCAAAATTCAATGAGTGACGACAGATTGTCATTGTTGCTAA
GTATTGAGTTTCCCATCCAAATATTTTGGGGTGTCTCAGTTTGTCAAATA
ATGACAAGTAAGGTCTGACACACTCCATTAGCATATTAAATTCATCTACT
AAAAGTCCACAAAGTAGTTTGAATGTTTTGGGTTTTTCAGCTAAATTCTT
GTACGTAAATGAGTTCTTTTCGAGGTAGCTAATAATACCCTGttgtttta
aaatctgaaaCTCTAGCtccttgatttttgatttctgttTTTCCAATTCC
TTCTTCTGCTGCTCAACCAAATCTGAAAGTTCATTTATATCTCGTTCTGG
ATGGGGTTGCGACGATAGAActgttgatgatgatgatgctTGAATTATCG
TGGGTGATGTAAGAGCTGGTGAAGACTTTGGAACCaaattttgtgttgtt
tttcgtTTCTTCACAGGAGAGTGTTTATACAATTTTCTTCGAGGACGTTT
CGGAGTGATGTTTGAATTTAAAATGGATAGGGCTGCCTGATACTTCTTTT
TGAATAAGTTCAACTTTGATTGTAATTTCAACTTTTCAGATTCATCTTTA
CTTGACTCGTATCGAGATTTGTAGTTCCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026562XLOC_026562Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042761-exon-sc0003657-1491911889:1061..1793TCONS_00042761-exon-sc0003657-1491911889:1061..1793Clytia hemisphaericaexon
TCONS_00042761-exon-sc0003657-1510915933:1061..1793TCONS_00042761-exon-sc0003657-1510915933:1061..1793Clytia hemisphaericaexon
TCONS_00042761-exon-sc0003657-1575043694:1061..1793TCONS_00042761-exon-sc0003657-1575043694:1061..1793Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042761-proteinTCONS_00042761-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003657supercontigsc0003657:1061..1793 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.203117	0	0.0766598	0.149999	5.47829	5.48342	9.92327	7.98618	2.22511	3.32153	2.53801	1.66839	2.11636	2.61872	1.73005	1.5678	1.7281	1.92753	2.15918	2.93725	1.96385	1.14948	0.698669	1.62327	0.0726925	0	4.45622	3.96316	6.68817	8.2689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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