TCONS_00042760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042760
Unique NameTCONS_00042760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042760 ID=TCONS_00042760|Name=TCONS_00042760|organism=Clytia hemisphaerica|type=transcript|length=305bp
CGAATGATTGTATCTCTGAGTGCATCACATTAATTACCTTTGACTGTTAG
ATTTTTTGACAGTCATTTTCACACTCCTGTACGGTCTATTGTCTTCGTAA
CTATTAACTAGTAACTATTTTAATTTATTGCGCCAGTTAAACCGTCaagt
ttcaagaaaaattttgacctgGTTTAGCTCCTGTTCTTATTATGAACCtt
acagtctgttcctctaacgattcctgcattgtaacacgcatgcgtaattt
ttcgttctttaaaccatatgtagttaattcccgtgataaacaaagaggaa
tgaat
Run BLAST on NCBI

transcript from alignment at sc0003654:8338..8642

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042760 ID=TCONS_00042760|Name=TCONS_00042760|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0003654:8338..8642 (Clytia hemisphaerica)
attcattcctctttgtttatcacgggaattaactacatatggtttaaaga
acgaaaaattacgcatgcgtgttacaatgcaggaatcgttagaggaacag
actgtaaGGTTCATAATAAGAACAGGAGCTAAACcaggtcaaaatttttc
ttgaaacttGACGGTTTAACTGGCGCAATAAATTAAAATAGTTACTAGTT
AATAGTTACGAAGACAATAGACCGTACAGGAGTGTGAAAATGACTGTCAA
AAAATCTAACAGTCAAAGGTAATTAATGTGATGCACTCAGAGATACAATC
ATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026561XLOC_026561Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042760-exon-sc0003654-1491911889:8338..8642TCONS_00042760-exon-sc0003654-1491911889:8338..8642Clytia hemisphaericaexon
TCONS_00042760-exon-sc0003654-1510915933:8338..8642TCONS_00042760-exon-sc0003654-1510915933:8338..8642Clytia hemisphaericaexon
TCONS_00042760-exon-sc0003654-1575043694:8338..8642TCONS_00042760-exon-sc0003654-1575043694:8338..8642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003654supercontigsc0003654:8338..8642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.738539	0	2.37511	2.86336	0	0	0.474754	0.888918	0.311176	0	1.12236	0.491863	0	0.888679	0.214802	0	0	0	0	0	0.748065	0.566932	0.846794	0.392745	0.396468	1.41535	0.545984	0.640309	0.864894	0.417583
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top