TCONS_00042758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042758
Unique NameTCONS_00042758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042758 ID=TCONS_00042758|Name=TCONS_00042758|organism=Clytia hemisphaerica|type=transcript|length=622bp
gaaattttggggTCGATACCATTGGaagctgaaattttgtgaaaaagggc
ctgGAAAATGACTATGTCAGTTTATGAGCCCCTGGAAACCTTTAACAACC
CCCtcggaaaatctgaaaaatgaacaaaaacccCTTACAAAATCAAGGCT
CAACCCCACTGGAAAAGTTTGACAATATGTATCCCTGTTCGTTCAAAAAT
GGATTAGCCGATTTTCACATGAAGATCTCTAGAAGTTTGTCAATACCCTG
TATaatctttataattttttttcaaaaattgaaaaattggtatctaacat
ttttctaaaaatctggAGAAAATTTTGGCAAAAGCTGGGAAATCATGAGA
AATACAattgttcaaaaattgcatGTGATAATGTGGAAATATCAGGATAC
CATTTTGACTCCATAATAAATTAaccacaaaaacattattagtAACGACT
CCAAAAAAATTGGCTAGTTCAAAATGCAGGTCAACAGGTTACAGGTCATT
AACACAGGTCAGCTTTAATTACTGTAAAATACAAAAGAAAAATGTTTGAA
AAACATTGGCTATTGTCAAAAATATCATACTGAAGGCATGTCTAGAACCT
TATTAAAGGTCAAAATTTATCC
Run BLAST on NCBI

transcript from alignment at sc0003653:3235..3856

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042758 ID=TCONS_00042758|Name=TCONS_00042758|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at sc0003653:3235..3856 (Clytia hemisphaerica)
GGATAAATTTTGACCTTTAATAAGGTTCTAGACATGCCTTCAGTATGATA
TTTTTGACAATAGCCAATGTTTTTCAAACATTTTTCTTTTGTATTTTACA
GTAATTAAAGCTGACCTGTGTTAATGACCTGTAACCTGTTGACCTGCATT
TTGAACTAGCCAATTTTTTTGGAGTCGTTactaataatgtttttgtggtT
AATTTATTATGGAGTCAAAATGGTATCCTGATATTTCCACATTATCACat
gcaatttttgaacaatTGTATTTCTCATGATTTCCCAGCTTTTGCCAAAA
TTTTCTccagatttttagaaaaatgttagataccaatttttcaatttttg
aaaaaaaattataaagattATACAGGGTATTGACAAACTTCTAGAGATCT
TCATGTGAAAATCGGCTAATCCATTTTTGAACGAACAGGGATACATATTG
TCAAACTTTTCCAGTGGGGTTGAGCCTTGATTTTGTAAGgggtttttgtt
catttttcagattttccgaGGGGGTTGTTAAAGGTTTCCAGGGGCTCATA
AACTGACATAGTCATTTTCcaggccctttttcacaaaatttcagcttCCA
ATGGTATCGAccccaaaatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026559XLOC_026559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042758-exon-sc0003653-1491911889:3235..3856TCONS_00042758-exon-sc0003653-1491911889:3235..3856Clytia hemisphaericaexon
TCONS_00042758-exon-sc0003653-1510915933:3235..3856TCONS_00042758-exon-sc0003653-1510915933:3235..3856Clytia hemisphaericaexon
TCONS_00042758-exon-sc0003653-1575043694:3235..3856TCONS_00042758-exon-sc0003653-1575043694:3235..3856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003653supercontigsc0003653:3235..3856 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.171805	0.167537	0.875369	0.190314	2.0852	0.549251	0.662648	0.620363	0.217165	0.268994	0.174062	0.286053	0.285655	0.593312	0.341448	0.15704	0.58038	0.396581	0.365265	0.0955559	0.581388	0.486138	0.0984941	0	0.184459	0.246939	0.235579	0	0.19069	0.0971416
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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