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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042742 ID=TCONS_00042742|Name=TCONS_00042742|organism=Clytia hemisphaerica|type=transcript|length=1137bp
GTAAAAACTAGCTTCAAGGTCCTCAGACCAAAGTAATGCATCATCAATAA
CTTTGATCTTATCAGGAAAGTCTGACACAATCTCGTCGAATCTACGTGAA
TAGCCGTCGCCGGATGCTATGTAGCCTTGAGGGAGGGTTTTGTAGCGGTA
CCTTCCCCAAGGGGTGATAAACGTTGTGAGATGGCGGTCCTCTTCTCGGA
GAGGTACACTGTGGTAACCGTTCCAAGCATCAGATACGGTTTTCCTTTTG
TTTGTAGGAACGGAGCGCACTTGATGATACGGTGATTGCGTGTGATGAGT
CTCTCTAGAAGCATGTTTATTTAGCAGTTGAAAGTCAACAGTTCGTCTTG
GGTTGCCATTCTTTTTAGCGCAGACAACCATACGGTGGCACCATGTAACG
GGTTCTCCTATTGGTACTGGTTCAATCACGCCTAAACGAACGTCACGGTC
TAGATTAGCTTTGACTGTGTCTTGCCAATGGATGGGTACGGGTATGGGAG
AATGATGTGCAACTGGTTCTGCCTCTGGGTCGATCATGAGTTTCATAGGA
GGTGCTTCCATTAGTGGCAGCGGCTGATGTTCGCAGGTATTGAATGTACT
ATTACCATAGTATTCCAGTAGAAAGTTCTCTAATTTGTGGCGGTGCTCAT
CTGTGGCTGGAAAGGGAAGTTCTGTTGGCAAGGGTGGTGGGAGGGCTCTT
CTTGGACAGCCACACTCTGAAACAATGTCCTGAGGGATGTTGATATCTGC
CAATGATAGGGATTCACCGATAGTAGGGAAGGTTTCGGAGATGATACCCA
AGTCTATGCACGCTCCCCGACTCAAGAAGAACTTGTCGGACTCGTTTGTA
ACGTAAACGAATTGTTTTGTTTCCTTGATGGTACCATCCTCACGTTTTCC
TGACATTTTGAGTATAATCGCACCAAGGACTTTGATTGACTGGTTGTTTG
CTGAGTTGAGTTTCTGTTGGAAGAAGGTCCTTCTTGTTGAGTCCAAGACG
TTGGATGTGTTTGAAACTGATGAGGCAACTCTGGCATCCCGTATCGGCCA
TTGCTCTGACTTGAATCGGTTTTGACTCGAAGGCAATTGGTTTGAAGCCA
AGCTGGAGGTAGTCTTCTTCGGCAACTTGGATGGACA Run BLAST on NCBI protein sequence of TCONS_00042742-protein >TCONS_00042742-protein ID=TCONS_00042742-protein|Name=TCONS_00042742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp
CPSKLPKKTTSSLASNQLPSSQNRFKSEQWPIRDARVASSVSNTSNVLDS
TRRTFFQQKLNSANNQSIKVLGAIILKMSGKREDGTIKETKQFVYVTNES
DKFFLSRGACIDLGIISETFPTIGESLSLADINIPQDIVSECGCPRRALP
PPLPTELPFPATDEHRHKLENFLLEYYGNSTFNTCEHQPLPLMEAPPMKL
MIDPEAEPVAHHSPIPVPIHWQDTVKANLDRDVRLGVIEPVPIGEPVTWC
HRMVVCAKKNGNPRRTVDFQLLNKHASRETHHTQSPYHQVRSVPTNKRKT
VSDAWNGYHSVPLREEDRHLTTFITPWGRYRYKTLPQGYIASGDGYSRRF
DEIVSDFPDKIKVIDDALLWSEDLEASFY Run BLAST on NCBI transcript from alignment at sc0003643:3246..4382 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042742 ID=TCONS_00042742|Name=TCONS_00042742|organism=Clytia hemisphaerica|type=transcript|length=1137bp|location=Sequence derived from alignment at sc0003643:3246..4382 (Clytia hemisphaerica)
TGTCCATCCAAGTTGCCGAAGAAGACTACCTCCAGCTTGGCTTCAAACCA
ATTGCCTTCGAGTCAAAACCGATTCAAGTCAGAGCAATGGCCGATACGGG
ATGCCAGAGTTGCCTCATCAGTTTCAAACACATCCAACGTCTTGGACTCA
ACAAGAAGGACCTTCTTCCAACAGAAACTCAACTCAGCAAACAACCAGTC
AATCAAAGTCCTTGGTGCGATTATACTCAAAATGTCAGGAAAACGTGAGG
ATGGTACCATCAAGGAAACAAAACAATTCGTTTACGTTACAAACGAGTCC
GACAAGTTCTTCTTGAGTCGGGGAGCGTGCATAGACTTGGGTATCATCTC
CGAAACCTTCCCTACTATCGGTGAATCCCTATCATTGGCAGATATCAACA
TCCCTCAGGACATTGTTTCAGAGTGTGGCTGTCCAAGAAGAGCCCTCCCA
CCACCCTTGCCAACAGAACTTCCCTTTCCAGCCACAGATGAGCACCGCCA
CAAATTAGAGAACTTTCTACTGGAATACTATGGTAATAGTACATTCAATA
CCTGCGAACATCAGCCGCTGCCACTAATGGAAGCACCTCCTATGAAACTC
ATGATCGACCCAGAGGCAGAACCAGTTGCACATCATTCTCCCATACCCGT
ACCCATCCATTGGCAAGACACAGTCAAAGCTAATCTAGACCGTGACGTTC
GTTTAGGCGTGATTGAACCAGTACCAATAGGAGAACCCGTTACATGGTGC
CACCGTATGGTTGTCTGCGCTAAAAAGAATGGCAACCCAAGACGAACTGT
TGACTTTCAACTGCTAAATAAACATGCTTCTAGAGAGACTCATCACACGC
AATCACCGTATCATCAAGTGCGCTCCGTTCCTACAAACAAAAGGAAAACC
GTATCTGATGCTTGGAACGGTTACCACAGTGTACCTCTCCGAGAAGAGGA
CCGCCATCTCACAACGTTTATCACCCCTTGGGGAAGGTACCGCTACAAAA
CCCTCCCTCAAGGCTACATAGCATCCGGCGACGGCTATTCACGTAGATTC
GACGAGATTGTGTCAGACTTTCCTGATAAGATCAAAGTTATTGATGATGC
ATTACTTTGGTCTGAGGACCTTGAAGCTAGTTTTTAC Coding sequence (CDS) from alignment at sc0003643:3246..4382 >TCONS_00042742 ID=TCONS_00042742|Name=TCONS_00042742|organism=Clytia hemisphaerica|type=CDS|length=1137bp|location=Sequence derived from alignment at sc0003643:3246..4382 (Clytia hemisphaerica)
TGTCCATCCAAGTTGCCGAAGAAGACTACCTCCAGCTTGGCTTCAAACCA
ATTGCCTTCGAGTCAAAACCGATTCAAGTCAGAGCAATGGCCGATACGGG
ATGCCAGAGTTGCCTCATCAGTTTCAAACACATCCAACGTCTTGGACTCA
ACAAGAAGGACCTTCTTCCAACAGAAACTCAACTCAGCAAACAACCAGTC
AATCAAAGTCCTTGGTGCGATTATACTCAAAATGTCAGGAAAACGTGAGG
ATGGTACCATCAAGGAAACAAAACAATTCGTTTACGTTACAAACGAGTCC
GACAAGTTCTTCTTGAGTCGGGGAGCGTGCATAGACTTGGGTATCATCTC
CGAAACCTTCCCTACTATCGGTGAATCCCTATCATTGGCAGATATCAACA
TCCCTCAGGACATTGTTTCAGAGTGTGGCTGTCCAAGAAGAGCCCTCCCA
CCACCCTTGCCAACAGAACTTCCCTTTCCAGCCACAGATGAGCACCGCCA
CAAATTAGAGAACTTTCTACTGGAATACTATGGTAATAGTACATTCAATA
CCTGCGAACATCAGCCGCTGCCACTAATGGAAGCACCTCCTATGAAACTC
ATGATCGACCCAGAGGCAGAACCAGTTGCACATCATTCTCCCATACCCGT
ACCCATCCATTGGCAAGACACAGTCAAAGCTAATCTAGACCGTGACGTTC
GTTTAGGCGTGATTGAACCAGTACCAATAGGAGAACCCGTTACATGGTGC
CACCGTATGGTTGTCTGCGCTAAAAAGAATGGCAACCCAAGACGAACTGT
TGACTTTCAACTGCTAAATAAACATGCTTCTAGAGAGACTCATCACACGC
AATCACCGTATCATCAAGTGCGCTCCGTTCCTACAAACAAAAGGAAAACC
GTATCTGATGCTTGGAACGGTTACCACAGTGTACCTCTCCGAGAAGAGGA
CCGCCATCTCACAACGTTTATCACCCCTTGGGGAAGGTACCGCTACAAAA
CCCTCCCTCAAGGCTACATAGCATCCGGCGACGGCTATTCACGTAGATTC
GACGAGATTGTGTCAGACTTTCCTGATAAGATCAAAGTTATTGATGATGC
ATTACTTTGGTCTGAGGACCTTGAAGCTAGTTTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042742-exon-sc0003643-1491911889:3246..4382 | TCONS_00042742-exon-sc0003643-1491911889:3246..4382 | Clytia hemisphaerica | exon |
| TCONS_00042742-exon-sc0003643-1510915933:3246..4382 | TCONS_00042742-exon-sc0003643-1510915933:3246..4382 | Clytia hemisphaerica | exon |
| TCONS_00042742-exon-sc0003643-1575043694:3246..4382 | TCONS_00042742-exon-sc0003643-1575043694:3246..4382 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003643 | supercontig | sc0003643:3246..4382 . |
Blast
The following BLAST results are available for this feature:
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