TCONS_00042739 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00042739
Unique Name	TCONS_00042739
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	525

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0003642:1..4942-

transcript sequence

>TCONS_00042739 ID=TCONS_00042739|Name=TCONS_00042739|organism=Clytia hemisphaerica|type=transcript|length=525bp
ACCGCGTACATGCCTTTGTTTCCCAGACTGGGATatgaaacaaaaagaat
tatATAATACATGATAGATTTACCTACGATAACCATTTTCTTCTGCACCA
TCGCCTTCTATTTCCATCCCATTATCGACATTGAtatcgtcatcatcatc
atcatcatcatcatcatcacccAGATGATCTTCTGGTTCACAACTGAAGG
TAGTATTATCTTCACTTTGAGCATTATTGTCTACAGAATCATAATCTGAA
ATAAGTTCTTGGCAATCAGCCTGTATTTCTTCTGCAAcataagaagaaga
agaatcacTTTGAACTTCTTCCTCAACTGCCTCATCGTCTGAACCATCTG
AAGAAGTCCTTGTTTCCTCGTCATTAACGTTATTCTGATTGTCTATCAAA
GCATATTGTGTGCGATGTCTTTCCTCTGTTGacctactctcggCTTTTTT
TCCACAATTGATACATGGGCAGTGTTTGTGAGGCTGCATTAGTGAATCAG
AGCACCAGCAAGGTAGAATTTCGTG

Run BLAST on NCBI

transcript from alignment at sc0003642:1..4942-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00042739 ID=TCONS_00042739|Name=TCONS_00042739|organism=Clytia hemisphaerica|type=transcript|length=4942bp|location=Sequence derived from alignment at sc0003642:1..4942- (Clytia hemisphaerica)
ACCGCGTACATGCCTTTGTTTCCCAGACTGGGATATGAAACAAAAAGAAT
TATATAATACATGATAGATTTACCTACGATAACCATTTTCTTCTGCACCA
TCGCCTTCTATTTCCATCCCATTATCGACATTGATATCGTCATCATCATC
ATCATCATCATCATCATCACCCAGATGATCTTCTGGTTCACAACTGAAGG
TAGTATTATCTTCACTTTGAGCATTATTGTCTACAGAATCATAATCTGAA
ATAAGTTCTTGGCAATCAGCCTGTATTTCTTCTGCAACATAAGAAGAAGA
AGAATCACTTTGAACTTCTTCCTCAACTGCCTCATCGTCTGAACCATCTG
AAGAAGTCCTTGTTTCCTCGTCATTAACGTTATTCTGATTGTCTATCAAA
GCATATTGTGTGCGATGTCTTTCCTCTGTTGACCTACTCTCGGGTGCCTA
ATAAACGTACATGTACGTTTATTTTTTTCATGCCAAATTTCCCGCCTGTA
CGCACCTTATTAAGAACCGTATGTTTATTTATTCTGAAGAATTTTCCCGC
TTGTACGTTTATTCCCTCCTGTACGTTTATTTATTTTCACCTAGACTAGC
AAACTAGTCTGTAAATTAATCATGTCAGAGGGCGGGAACATAAAGGCGGC
GGGCGTTTGCTAGAATAGGAGCTGCGTAGGAGAGCGAGCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCTGCGTAGGAGAGCGAGCAAAAGTTGGTGAGAGGCT
GCTGATATACAGACTAGAACATTCTGCCACGGCTTCATTTTGGAGGTTGT
GAGAACGGAGGAGTGTCTTCCTAAATTTTGGAGGGAGAAAAGCCGACAGA
CCACTTTATTTTGAATTTTGGGTGGTGGAGGAGCCACCTTTCAAGTTTTG
AAACTTTTACATCTTTAGTTGTTTTTGTTATTCATACATTCCTAGAAAGG
TAAGTATTTGCAATTTAGCTTCAGTTTTCTACAATCATCAAAAGTGTACA
AGGATTATTCAGTTTTCCTTATGCAGGTTGGTGGGATATGTTACGTGCTT
TTGGGGCTTTTTGCTAGCCTCTTTCATTCAAGGTAAGAAATGTTTTTTGG
TATTTGGTTCCACCTAAATACTTTTTGCTTTTTATTTTAGTACTTACAGA
CTACTTGTTAAGGAACTTGATTACTCTAGTCTCATTGTGGCTAAGTGAAC
CCCTCCAACACTCTTTTCTATGAATACAACAGCAACACTAACCAGGCAGG
AACTCTGCTCAAAAGTACCCAACAAAATAACCTTTTTGAAAAAAATTTGA
CACTATTTTAAGAATAATAACATATCATAATAATCAATAATTCTGACACT
TTTAATATCTCACGATAACCTAACACAGGTTTTCAAGCCGTACCAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNACAAGTTCTGATAACTGATGTTACA
AGATTTTCCATCTTCTCTTGCCTCTCAAATCAAAACAAAAAACAATCAAA
AATGAGCCAAAGAATTTTGCATGCAGAGAACCCTGAAGAAAAGCCACATA
TACACAAAGAAGAGACTCATCAATAAGAAACAAGAAACAAAACAAAATCT
TTTCAAATAAAAATTTCCACTAGCTAGAAGTCAGCCATTATTTTTTCCAA
TCACTCCCACCTCAAAAATCAAAACAACACGATCTGCGACTTTGACGGAA
GTTTTCATTTCTCATTTCACGAATTTCTCAAAGTTCATTCATTTCTACAA
CGCCGAAATCTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTCGCCGCCGACAAAATTTCTTCCTACGCTTACCTAA
CTCCTACGCTCACTTTTCCCGCGTGATACCGTTCCAGCCCGACTGGCGTG
CCAGTCTAATTTTCACCCAATATCGCCCAATTCATACTGGAAAAATTTGT
TATTTTTTGTTCAAGTAAGATATGTTGAAAGGCCATTAATTACATTTGAA
CGTATTGTGGGAGATTTCAAGTGTTACAAGAGTAAATTCGAACGTTTTGC
TTATATTTAGTACTTGTCATTGATCTATAAGGGATATACCTATACTTAAG
TCAGTCGTTTCGACAGGTTTCGACCTGGGATGTTCTACTTTTGAAAATTT
GGTAGATTATTCCCTGTATGTTTATTTTAGCCTGTACGTTTATTTATTTT
AGCTCTGATTTCTCGCCTGTACGTTTATTTCAGCCTGTACGTTTATTAAT
TCCAATTTTATTCTCTCCCCTGTACGTTTATTTATTTTAGCTCTGATTTC
TCGCCTGTACGTTTATTTCAGCCTGTACGTTTATTAATTCCAATTTTATT
CTCTCCCCTGTACGTTTATTTTGGTCTGTATGTTTATTAGGCACCCGAGA
GTACTCACAGCTTTTTTTCCACAATTGATACATGGGCAGTGTTTGTGAGG
CTGCATTAGTGAATCAGAGCACCAGCAAGGTAGAATTTCGTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_026542	XLOC_026542	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00042739-exon-sc0003642-1575043694:4500..4942	TCONS_00042739-exon-sc0003642-1575043694:4500..4942	Clytia hemisphaerica	exon
TCONS_00042739-exon-sc0003642-1575043694:1..82	TCONS_00042739-exon-sc0003642-1575043694:1..82	Clytia hemisphaerica	exon
TCONS_00042739-exon-sc0003642-1510915933:4500..4942	TCONS_00042739-exon-sc0003642-1510915933:4500..4942	Clytia hemisphaerica	exon
TCONS_00042739-exon-sc0003642-1510915933:1..82	TCONS_00042739-exon-sc0003642-1510915933:1..82	Clytia hemisphaerica	exon
TCONS_00042739-exon-sc0003642-1491911889:4500..4942	TCONS_00042739-exon-sc0003642-1491911889:4500..4942	Clytia hemisphaerica	exon
TCONS_00042739-exon-sc0003642-1491911889:1..82	TCONS_00042739-exon-sc0003642-1491911889:1..82	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0003642	supercontig	sc0003642:1..4942 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.449085	0.462033	0.4167	0.248733	6.29976	4.54908	2.85917	3.36499	2.45983	6.08897	2.91796	2.31793	2.11347	1.54535	1.21128	1.63628	2.56362	1.22147	1.00733	2.24798	1.29762	0.767575	0.849798	0.859166	1.76258	2.21814	1.11501	0.821478	0.747675	0.404413

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00042739 vs. Swiss-Prot (Human)

BLAST of TCONS_00042739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00042739 (transcript) - C. hemisphaerica