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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042733 ID=TCONS_00042733|Name=TCONS_00042733|organism=Clytia hemisphaerica|type=transcript|length=980bp ATCAGGGTTGTTCCATAATGGTTCAAAGCTAAAAGAAGAAGCATTCCTTT TTTTGAATGTGTACCATATTGTAGATCTTAAAAGAAACTACTGATGCCTA GGCTAAGACAATTAACAAACTATATGGGAGCTGCAGGACTTCACTGGATT TGTAGTGTTCCGATCGGAATCACAATCTCCTTAATCGGTTTAATCGGGAA CGttatttccgtcataatttGGTTCCACTTAAACCAATCCAAGTCAAGAC GCAATAAATCAACCGCTCAATACTTTATCTCCTTAGCATTTTGCGATAGT GCGTTGCTGTTATTCTTTTTACTCCACGATTCATTACCAAGTCTGGTTTC TACCATCAAAAGCAATTATTATTACGCAGCAACATGGTGCTGGTTTCTAT TCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCTGGGTCGTAGTTGGT GTCACCATCAATCGATACATCATGATTGCCTTTCCGACCAAGGTCCAGAT TATTTACTCAGATACCCGTTCTAAAATCGGAATTTTCGGCATCACACTAT TCGCTTTCCTCGTCAATTTGCCACACTTCTTTACGTACCACGCCGTCAAA GACGGGGAAAACGGTGACTATAAGATTACACATACGGAATACGGGGCCTC GGAAGCATCCACTAATTATGAATTTTGGGCTCATTGCATAGCTCTTGTTT TGGGACCATGGGTCGTCATTGCGATCTTGAATGGTTTGataatcaagatt ttgaaaaaccaaATGAAGAAATTTACTAAAGAAAAACCCACCAAGCAAAT GCGACAAGAGCAACAAATGACACGAACTTTGCTTTTCATCACGTTTTCCT TCCTCATACTTTTGGCTTGGCAATGTGTTACTCAATGTTTTTGGATGCTT GGATATGGGAAAGGTAAATNTTCCTCATACTTTTGGCTTGGCAATGTGTT ACTCAATGTTTTTGGATGCTTGGATATGGG Run BLAST on NCBI protein sequence of TCONS_00042733-protein >TCONS_00042733-protein ID=TCONS_00042733-protein|Name=TCONS_00042733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MPRLRQLTNYMGAAGLHWICSVPIGITISLIGLIGNVISVIIWFHLNQSK SRRNKSTAQYFISLAFCDSALLLFFLLHDSLPSLVSTIKSNYYYAATWCW FLFPMFFFALVCSIWVVVGVTINRYIMIAFPTKVQIIYSDTRSKIGIFGI TLFAFLVNLPHFFTYHAVKDGENGDYKITHTEYGASEASTNYEFWAHCIA LVLGPWVVIAILNGLIIKILKNQMKKFTKEKPTKQMRQEQQMTRTLLFIT FSFLILLAWQCVTQCFWMLGYGKGKXSSYFWLGNVLLNVFGCLDM Run BLAST on NCBI transcript from alignment at sc0003637:5730..10107+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042733 ID=TCONS_00042733|Name=TCONS_00042733|organism=Clytia hemisphaerica|type=transcript|length=4378bp|location=Sequence derived from alignment at sc0003637:5730..10107+ (Clytia hemisphaerica) ATCAGGGTTGTTCCATAATGGTTCAAAGCTAAAAGAAGAAGCATTCCTTT
TTTTGAATGTGTACCATATTGTAGATCTTAAAAGAAACTACTGATGCCTA
GGCTAAGACAATTAACAAACTGTAGGTATTGTAggagggggaaatttgta
aaatcgttcgatttttttagtcaaagcacttgttatacatttttggaaag
ctaaggggtaggggaatcaaaacaacttgaatgtcaattttttttcggac
aaatacgacggtctcaggcaaaaatcagggtgaaaaattaataaaaattt
agcttgagaaaatggagacctgttgtttctttttggaaagctctcaaaaa
attaagattaatgatatattgcgagtataggtgatttcagtacctaactc
aagatattgagcttccaaaagcgcaaaaactggacaaaacaactgtttct
ggctgaaaaacactgtttttaagggttgatatctcgagttaggtacagaa
gtCACCTATATTTGCAAGATATCTCTaatcttcttaatttttttgagagc
tttctgaaaatatacaacaggtctccgttttctcaagccaaaattttcat
taatttttcaccctatgatttttgcctgagaccgtcgtatttgtccgaaa
atcacaccaaagtgtctgaaaaaaaattggcaaccAAGTtgttttgattc
ccctaccccttagctttccaaaaatatataaaaagtgctttgactaaaaa
aatcgagtgacctcaaaaaaacgaacaaatttcccttTATTATTTTAATT
AGAAGAGAGTATTttgtagttttttctttttcagattcttttttaattgt
tttttgtcCTCAGTAGCCAGAGCAGCGTAGGCAGGTCTTTTTTTCTAATC
GTAACGAGAAATCTCACAGTTGGATGGAGgtcttttttaaattatgaaaG
AGCCTTTGCTAAGGTCTTTTTTTGCCTTTGgtttaatacacctttccgaC
CGTAGCCGCCGCGCGtgcatttttttgtccattttaccacattaaaaccg
tcccagtcttttttcgcaccaatagacaatagaaaaagctgtaaaaaagg
attggatcgagctTAAGGTGACTAATTAATTAATAAAATGGCAcgcacct
gaccgcgcgactacggtcgaaaaggtgtattcccaAAAGAGTGctaaatc
ataaaaaatgattACTGCTAAAATATCATGTACTAAAAACaggaatccta
tgaaatagagTAATAACGTTAAGTGCACTGGGTTATTACTTCTCAGCCAA
AAAAACCTCAcccgtacccagagccactttcACTGCTCTTTGATTTCACT
AACAANTTaaaaacacgaatcctatgaaatagagTAATAACGTTATGTGC
ATTGGGTTATTACTTCTTAGCCAAAAAACCTCACCCGTACCCAGAGCTAC
TTTCACTGCTTTTTGATTTCACTAACAAACCTTTCGTAAGCACTATCAga
ataataaaacaataaaaaaaactaaGGGACTGAGTTTAGTTCATGAGTTT
TCTACAAACTATTCAATAGCTTTAATATCATTTTGCTTTTTGGATCCGAG
AAATTTTTCCCGGTCAAATTGTTGAAAAAGATCCATTCTTTTGTAAAGTA
ACTTTTTCAGAAATTATCTTCAAAGGGGGTAATCATTGAACTTCATTTCT
CAAAACAGGGATTTTAGGATTGGTGACCTCGAGGTGAATCactttcataa
atttttgtcaatctaaCTGAACATTCAGTTGCTAGTTGTCCATCACACGC
TTCTTTTTCCATACGAACAAAAATATATGAACATAAGGCATACTCTTTGT
GTGCTTGattgtaggggggggggggcattttgcaatttttggaaaNCAAA
AATATATGAACATAAGGCATACTCTTTGTGTGCTTGattgtagggggggg
gggtcattctACAATTTTTGGAAAGAAATCACCCTCATATCACTTTATAA
AGAtccccccattttatgacctttatgctacgaagtgccaaaattggcca
aaaccgcCAAAacccttcattttcctagggattttcaGCATAATGGTATA
ATAAGGTCAATAGCACTTAATGTAGATTTTTATCTGGAGTACATAcccac
cccctgcttattccaccccctaAAATTAACACAAGAGTACCCTGTCAGAA
GATTAGGCATTTCGGACACATCCCAATAAGAAaggaacattcgaaggctt
cttataaaaaaagtgtagtaGAACAGAAAACCTAACAGAAGaggtttttt
ctgattttcttttccattttcattcaacaGATATGGGAGCTGCAGGACTT
CACTGGATTTGTAGTGTTCCGATCGGAATCACAATCTCCTTAATCGGTTT
AATCGGGAACGttatttccgtcataatttGGTTCCACTTAAACCAATCCA
AGTCAAGACGCAATAAATCAACCGCTCAATACTTTATCTCCTTAGCATTT
TGCGATAGTGCGTTGCTGTTATTCTTTTTACTCCACGATTCATTACCAAG
TCTGGTTTCTACCATCAAAAGCAATTATTATTACGCAGCAACATGGTGCT
GGTTTCTATTCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCTGGGTC
GTAGTTGGTGTCACCATCAATCGATACATCATGATTGCCTTTCCGACCAA
GGTAAAAGTTTAGAATTTAATCTCGCAAGGTTgcgggttcaacccccagc
cgggtcatactaaagattctcaaaatggtacttgatgcctctctgtttga
ttctcagcaattaagagaaggatcaagggtagttggagcaatccagggag
aaagagtggtgccctcccTTTACCTTCGGATAGTtagctatcaaaagagg
agccttcgggtcgtcTCCGACTGCAGTCACAGACTTAAAAATTATACACA
TCCCTTTCACAGCTGATTGTGAGTGGTTGCAATTGACATGTTTGGGCCAG
TACAACGGTGTATTATACACTTCTGAGTGCTTTGATACGTATAAAAGCGA
AACAAAATCCTATACTCAATTTAGTAGCACTAAGTCCTTATCGGTCATTA
AACTGTCACAGGATCCCATAATAAGGTAAAGTCTCGATGACTCGAACCTA
TACAACTTGAATATCTCCTAGCTCGAACAAGTTagctggtcccttcagtt
agcAATGGCTttctcagctggcacacaacgttgtttcaacgtttatctaa
cgttcacaacgtccaaataacgttagatgaacgttgaaacaacgttatga
gCTAGCTGGGCGCTCCTCAATATGCCTGTTCGAGTTAttgagactccact
gtataacgATTTATCTTATTGATTTTGTAGGTCCAGATTATTTACTCAGA
TACCCGTTCTAAAATCGGAATTTTCGGCATCACACTATTCGCTTTCCTCG
TCAATTTGCCACACTTCTTTACGTACCACGCCGTCAAAGACGGGGAAAAC
GGTGACTATAAGATTACACATACGGAATACGGGGCCTCGGAAGCATCCAC
TAATTATGAATTTTGGGCTCATTGCATAGCTCTTGTTTTGGGACCATGGG
TCGTCATTGCGATCTTGAATGGTTTGataatcaagattttgaaaaaccaa
ATGAAGAAATTTACTAAAGAAAAACGTAAGTATCAAAAGCAGTTTGCGCA
AGCCATTCTAAGAATAAGATATTGGTCAGTCAAATCTAATGTAACTATGA
TCTAATAAAAAATTAGTTATGAATTCTTTCAACTTTACCCTTTTAAAGAG
TACTTGATTAAAAAACAACCCGAATTTAGTCAAAAAGTTCCATAATAATG
TTATACCCTCTAAAACTTGGTTCAGCCTCAGCTACACTGTCATATTTTCA
GACTTCGCAATTTTCAGTTTCATATTATCCTTGATTTGTAAATTAGGCCT
CGTTTGTTAtaaaagagccccccccccagcagACCTTCAATCCAAGCAAT
CACGCAATAtgttttcgaaattcacgcatttacgcaactcgtttaaaatt
ttcacgcgttcacgcattcacgcatgtGAAAAAGCTCATTCAAGGATTCA
CGTGCAGACCACTTGGGACCCCTATAAAACAAGTTATTTATAAAcattat
aaacattttttttaatttttgatttttccaactAGCCACCAAGCAAATGC
GACAAGAGCAACAAATGACACGAACTTTGCTTTTCATCACGTTTTCCTTC
CTCATACTTTTGGCTTGGCAATGTGTTACTCAATGTTTTTGGATGCTTGG
ATATGGGAAAGGTAAATNTTCCTCATACTTTTGGCTTGGCAATGTGTTAC
TCAATGTTTTTGGATGCTTGGATATGGG Coding sequence (CDS) from alignment at sc0003637:5730..10107+ >TCONS_00042733 ID=TCONS_00042733|Name=TCONS_00042733|organism=Clytia hemisphaerica|type=CDS|length=3540bp|location=Sequence derived from alignment at sc0003637:5730..10107+ (Clytia hemisphaerica) ATGCCTAGGCTAAGACAATTAACAAACTATATGGGAGCTGCAGGACTTCA CTGGATTTGTAGTGTTCCGATCGGAATCACAATCTCCTTAATCGGTTTAA TCGGGAACGttatttccgtcataatttGGTTCCACTTAAACCAATCCAAG TCAAGACGCAATAAATCAACCGCTCAATACTTTATCTCCTTAGCATTTTG CGATAGTGCGTTGCTGTTATTCTTTTTACTCCACGATTCATTACCAAGTC TGGTTTCTACCATCAAAAGCAATTATTATTACGCAGCAACATGGTGCTGG TTTCTATTCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCTGGGTCGT AGTTGGTGTCACCATCAATCGATACATCATGATTGCCTTTCCGACCAAGG TCCAGATTATTTACTCAGATACCCGTTCTAAAATCGGAATTTTCGGCATC ACACTATTCGCTTTCCTCGTCAATTTGCCACACTTCTTTACGTACCACGC CGTCAAAGACGGGGAAAACGGTGACTATAAGATTACACATACGGAATACG GGGCCTCGGAAGCATCCACTAATTATGAATTTTGGGCTCATTGCATAGCT CTTGTTTTGGGACCATGGGTCGTCATTGCGATCTTGAATGGTTTGataat caagattttgaaaaaccaaATGAAGAAATTTACTAAAGAAAAACCCACCA AGCAAATGCGACAAGAGCAACAAATGACACGAACTTTGCTTTTCATCACG TTTTCCTTCCTCATACTTTTGGCTTGGCAATGTGTTACTCAATGTTTTTG GATGCTTGGATATGGGAAAGGTAAATNTTCCTCATACTTTTGGCTTGGCA ATGTGTTACTCAATGTTTTTGGATGCTTGGATATGATGCCTAGGCTAAGA CAATTAACAAACTATATGGGAGCTGCAGGACTTCACTGGATTTGTAGTGT TCCGATCGGAATCACAATCTCCTTAATCGGTTTAATCGGGAACGttattt ccgtcataatttGGTTCCACTTAAACCAATCCAAGTCAAGACGCAATAAA TCAACCGCTCAATACTTTATCTCCTTAGCATTTTGCGATAGTGCGTTGCT GTTATTCTTTTTACTCCACGATTCATTACCAAGTCTGGTTTCTACCATCA AAAGCAATTATTATTACGCAGCAACATGGTGCTGGTTTCTATTCCCGATG TTCTTTTTCGCATTGGTGTGCAGTATCTGGGTCGTAGTTGGTGTCACCAT CAATCGATACATCATGATTGCCTTTCCGACCAAGGTCCAGATTATTTACT CAGATACCCGTTCTAAAATCGGAATTTTCGGCATCACACTATTCGCTTTC CTCGTCAATTTGCCACACTTCTTTACGTACCACGCCGTCAAAGACGGGGA AAACGGTGACTATAAGATTACACATACGGAATACGGGGCCTCGGAAGCAT CCACTAATTATGAATTTTGGGCTCATTGCATAGCTCTTGTTTTGGGACCA TGGGTCGTCATTGCGATCTTGAATGGTTTGataatcaagattttgaaaaa ccaaATGAAGAAATTTACTAAAGAAAAACCCACCAAGCAAATGCGACAAG AGCAACAAATGACACGAACTTTGCTTTTCATCACGTTTTCCTTCCTCATA CTTTTGGCTTGGCAATGTGTTACTCAATGTTTTTGGATGCTTGGATATGG GAAAGGTAAATNTTCCTCATACTTTTGGCTTGGCAATGTGTTACTCAATG TTTTTGGATGCTTGGATATGATGCCTAGGCTAAGACAATTAACAAACTAT ATGGGAGCTGCAGGACTTCACTGGATTTGTAGTGTTCCGATCGGAATCAC AATCTCCTTAATCGGTTTAATCGGGAACGttatttccgtcataatttGGT TCCACTTAAACCAATCCAAGTCAAGACGCAATAAATCAACCGCTCAATAC TTTATCTCCTTAGCATTTTGCGATAGTGCGTTGCTGTTATTCTTTTTACT CCACGATTCATTACCAAGTCTGGTTTCTACCATCAAAAGCAATTATTATT ACGCAGCAACATGGTGCTGGTTTCTATTCCCGATGTTCTTTTTCGCATTG GTGTGCAGTATCTGGGTCGTAGTTGGTGTCACCATCAATCGATACATCAT GATTGCCTTTCCGACCAAGGTCCAGATTATTTACTCAGATACCCGTTCTA AAATCGGAATTTTCGGCATCACACTATTCGCTTTCCTCGTCAATTTGCCA CACTTCTTTACGTACCACGCCGTCAAAGACGGGGAAAACGGTGACTATAA GATTACACATACGGAATACGGGGCCTCGGAAGCATCCACTAATTATGAAT TTTGGGCTCATTGCATAGCTCTTGTTTTGGGACCATGGGTCGTCATTGCG ATCTTGAATGGTTTGataatcaagattttgaaaaaccaaATGAAGAAATT TACTAAAGAAAAACCCACCAAGCAAATGCGACAAGAGCAACAAATGACAC GAACTTTGCTTTTCATCACGTTTTCCTTCCTCATACTTTTGGCTTGGCAA TGTGTTACTCAATGTTTTTGGATGCTTGGATATGGGAAAGGTAAATNTTC CTCATACTTTTGGCTTGGCAATGTGTTACTCAATGTTTTTGGATGCTTGG ATATGATGCCTAGGCTAAGACAATTAACAAACTATATGGGAGCTGCAGGA CTTCACTGGATTTGTAGTGTTCCGATCGGAATCACAATCTCCTTAATCGG TTTAATCGGGAACGttatttccgtcataatttGGTTCCACTTAAACCAAT CCAAGTCAAGACGCAATAAATCAACCGCTCAATACTTTATCTCCTTAGCA TTTTGCGATAGTGCGTTGCTGTTATTCTTTTTACTCCACGATTCATTACC AAGTCTGGTTTCTACCATCAAAAGCAATTATTATTACGCAGCAACATGGT GCTGGTTTCTATTCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCTGG GTCGTAGTTGGTGTCACCATCAATCGATACATCATGATTGCCTTTCCGAC CAAGGTCCAGATTATTTACTCAGATACCCGTTCTAAAATCGGAATTTTCG GCATCACACTATTCGCTTTCCTCGTCAATTTGCCACACTTCTTTACGTAC CACGCCGTCAAAGACGGGGAAAACGGTGACTATAAGATTACACATACGGA ATACGGGGCCTCGGAAGCATCCACTAATTATGAATTTTGGGCTCATTGCA TAGCTCTTGTTTTGGGACCATGGGTCGTCATTGCGATCTTGAATGGTTTG ataatcaagattttgaaaaaccaaATGAAGAAATTTACTAAAGAAAAACC CACCAAGCAAATGCGACAAGAGCAACAAATGACACGAACTTTGCTTTTCA TCACGTTTTCCTTCCTCATACTTTTGGCTTGGCAATGTGTTACTCAATGT TTTTGGATGCTTGGATATGGGAAAGGTAAATNTTCCTCATACTTTTGGCT TGGCAATGTGTTACTCAATGTTTTTGGATGCTTGGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00042733-exon-sc0003637-1491911889:5730..5850 | TCONS_00042733-exon-sc0003637-1491911889:5730..5850 | Clytia hemisphaerica | exon |
| TCONS_00042733-exon-sc0003637-1510915933:5730..5850 | TCONS_00042733-exon-sc0003637-1510915933:5730..5850 | Clytia hemisphaerica | exon |
| TCONS_00042733-exon-sc0003637-1575043694:5730..5850 | TCONS_00042733-exon-sc0003637-1575043694:5730..5850 | Clytia hemisphaerica | exon |
| TCONS_00042733-exon-sc0003637-1491911889:8060..8430 | TCONS_00042733-exon-sc0003637-1491911889:8060..8430 | Clytia hemisphaerica | exon |
| TCONS_00042733-exon-sc0003637-1510915933:8060..8430 | TCONS_00042733-exon-sc0003637-1510915933:8060..8430 | Clytia hemisphaerica | exon |
| TCONS_00042733-exon-sc0003637-1575043694:8060..8430 | TCONS_00042733-exon-sc0003637-1575043694:8060..8430 | Clytia hemisphaerica | exon |
| TCONS_00042733-exon-sc0003637-1491911889:9110..9404 | TCONS_00042733-exon-sc0003637-1491911889:9110..9404 | Clytia hemisphaerica | exon |
| TCONS_00042733-exon-sc0003637-1510915933:9110..9404 | TCONS_00042733-exon-sc0003637-1510915933:9110..9404 | Clytia hemisphaerica | exon |
| TCONS_00042733-exon-sc0003637-1575043694:9110..9404 | TCONS_00042733-exon-sc0003637-1575043694:9110..9404 | Clytia hemisphaerica | exon |
| TCONS_00042733-exon-sc0003637-1491911889:9915..10107 | TCONS_00042733-exon-sc0003637-1491911889:9915..10107 | Clytia hemisphaerica | exon |
| TCONS_00042733-exon-sc0003637-1510915933:9915..10107 | TCONS_00042733-exon-sc0003637-1510915933:9915..10107 | Clytia hemisphaerica | exon |
| TCONS_00042733-exon-sc0003637-1575043694:9915..10107 | TCONS_00042733-exon-sc0003637-1575043694:9915..10107 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0003637 | supercontig | sc0003637:5730..10107 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|