TCONS_00042733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042733
Unique NameTCONS_00042733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042733 ID=TCONS_00042733|Name=TCONS_00042733|organism=Clytia hemisphaerica|type=transcript|length=980bp
ATCAGGGTTGTTCCATAATGGTTCAAAGCTAAAAGAAGAAGCATTCCTTT
TTTTGAATGTGTACCATATTGTAGATCTTAAAAGAAACTACTGATGCCTA
GGCTAAGACAATTAACAAACTATATGGGAGCTGCAGGACTTCACTGGATT
TGTAGTGTTCCGATCGGAATCACAATCTCCTTAATCGGTTTAATCGGGAA
CGttatttccgtcataatttGGTTCCACTTAAACCAATCCAAGTCAAGAC
GCAATAAATCAACCGCTCAATACTTTATCTCCTTAGCATTTTGCGATAGT
GCGTTGCTGTTATTCTTTTTACTCCACGATTCATTACCAAGTCTGGTTTC
TACCATCAAAAGCAATTATTATTACGCAGCAACATGGTGCTGGTTTCTAT
TCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCTGGGTCGTAGTTGGT
GTCACCATCAATCGATACATCATGATTGCCTTTCCGACCAAGGTCCAGAT
TATTTACTCAGATACCCGTTCTAAAATCGGAATTTTCGGCATCACACTAT
TCGCTTTCCTCGTCAATTTGCCACACTTCTTTACGTACCACGCCGTCAAA
GACGGGGAAAACGGTGACTATAAGATTACACATACGGAATACGGGGCCTC
GGAAGCATCCACTAATTATGAATTTTGGGCTCATTGCATAGCTCTTGTTT
TGGGACCATGGGTCGTCATTGCGATCTTGAATGGTTTGataatcaagatt
ttgaaaaaccaaATGAAGAAATTTACTAAAGAAAAACCCACCAAGCAAAT
GCGACAAGAGCAACAAATGACACGAACTTTGCTTTTCATCACGTTTTCCT
TCCTCATACTTTTGGCTTGGCAATGTGTTACTCAATGTTTTTGGATGCTT
GGATATGGGAAAGGTAAATNTTCCTCATACTTTTGGCTTGGCAATGTGTT
ACTCAATGTTTTTGGATGCTTGGATATGGG
Run BLAST on NCBI

protein sequence of TCONS_00042733-protein

>TCONS_00042733-protein ID=TCONS_00042733-protein|Name=TCONS_00042733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MPRLRQLTNYMGAAGLHWICSVPIGITISLIGLIGNVISVIIWFHLNQSK
SRRNKSTAQYFISLAFCDSALLLFFLLHDSLPSLVSTIKSNYYYAATWCW
FLFPMFFFALVCSIWVVVGVTINRYIMIAFPTKVQIIYSDTRSKIGIFGI
TLFAFLVNLPHFFTYHAVKDGENGDYKITHTEYGASEASTNYEFWAHCIA
LVLGPWVVIAILNGLIIKILKNQMKKFTKEKPTKQMRQEQQMTRTLLFIT
FSFLILLAWQCVTQCFWMLGYGKGKXSSYFWLGNVLLNVFGCLDM
Run BLAST on NCBI

transcript from alignment at sc0003637:5730..10107+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042733 ID=TCONS_00042733|Name=TCONS_00042733|organism=Clytia hemisphaerica|type=transcript|length=4378bp|location=Sequence derived from alignment at sc0003637:5730..10107+ (Clytia hemisphaerica)
ATCAGGGTTGTTCCATAATGGTTCAAAGCTAAAAGAAGAAGCATTCCTTT TTTTGAATGTGTACCATATTGTAGATCTTAAAAGAAACTACTGATGCCTA GGCTAAGACAATTAACAAACTGTAGGTATTGTAggagggggaaatttgta aaatcgttcgatttttttagtcaaagcacttgttatacatttttggaaag ctaaggggtaggggaatcaaaacaacttgaatgtcaattttttttcggac aaatacgacggtctcaggcaaaaatcagggtgaaaaattaataaaaattt agcttgagaaaatggagacctgttgtttctttttggaaagctctcaaaaa attaagattaatgatatattgcgagtataggtgatttcagtacctaactc aagatattgagcttccaaaagcgcaaaaactggacaaaacaactgtttct ggctgaaaaacactgtttttaagggttgatatctcgagttaggtacagaa gtCACCTATATTTGCAAGATATCTCTaatcttcttaatttttttgagagc tttctgaaaatatacaacaggtctccgttttctcaagccaaaattttcat taatttttcaccctatgatttttgcctgagaccgtcgtatttgtccgaaa atcacaccaaagtgtctgaaaaaaaattggcaaccAAGTtgttttgattc ccctaccccttagctttccaaaaatatataaaaagtgctttgactaaaaa aatcgagtgacctcaaaaaaacgaacaaatttcccttTATTATTTTAATT AGAAGAGAGTATTttgtagttttttctttttcagattcttttttaattgt tttttgtcCTCAGTAGCCAGAGCAGCGTAGGCAGGTCTTTTTTTCTAATC GTAACGAGAAATCTCACAGTTGGATGGAGgtcttttttaaattatgaaaG AGCCTTTGCTAAGGTCTTTTTTTGCCTTTGgtttaatacacctttccgaC CGTAGCCGCCGCGCGtgcatttttttgtccattttaccacattaaaaccg tcccagtcttttttcgcaccaatagacaatagaaaaagctgtaaaaaagg attggatcgagctTAAGGTGACTAATTAATTAATAAAATGGCAcgcacct gaccgcgcgactacggtcgaaaaggtgtattcccaAAAGAGTGctaaatc ataaaaaatgattACTGCTAAAATATCATGTACTAAAAACaggaatccta tgaaatagagTAATAACGTTAAGTGCACTGGGTTATTACTTCTCAGCCAA AAAAACCTCAcccgtacccagagccactttcACTGCTCTTTGATTTCACT AACAANTTaaaaacacgaatcctatgaaatagagTAATAACGTTATGTGC ATTGGGTTATTACTTCTTAGCCAAAAAACCTCACCCGTACCCAGAGCTAC TTTCACTGCTTTTTGATTTCACTAACAAACCTTTCGTAAGCACTATCAga ataataaaacaataaaaaaaactaaGGGACTGAGTTTAGTTCATGAGTTT TCTACAAACTATTCAATAGCTTTAATATCATTTTGCTTTTTGGATCCGAG AAATTTTTCCCGGTCAAATTGTTGAAAAAGATCCATTCTTTTGTAAAGTA ACTTTTTCAGAAATTATCTTCAAAGGGGGTAATCATTGAACTTCATTTCT CAAAACAGGGATTTTAGGATTGGTGACCTCGAGGTGAATCactttcataa atttttgtcaatctaaCTGAACATTCAGTTGCTAGTTGTCCATCACACGC TTCTTTTTCCATACGAACAAAAATATATGAACATAAGGCATACTCTTTGT GTGCTTGattgtaggggggggggggcattttgcaatttttggaaaNCAAA AATATATGAACATAAGGCATACTCTTTGTGTGCTTGattgtagggggggg gggtcattctACAATTTTTGGAAAGAAATCACCCTCATATCACTTTATAA AGAtccccccattttatgacctttatgctacgaagtgccaaaattggcca aaaccgcCAAAacccttcattttcctagggattttcaGCATAATGGTATA ATAAGGTCAATAGCACTTAATGTAGATTTTTATCTGGAGTACATAcccac cccctgcttattccaccccctaAAATTAACACAAGAGTACCCTGTCAGAA GATTAGGCATTTCGGACACATCCCAATAAGAAaggaacattcgaaggctt cttataaaaaaagtgtagtaGAACAGAAAACCTAACAGAAGaggtttttt ctgattttcttttccattttcattcaacaGATATGGGAGCTGCAGGACTT CACTGGATTTGTAGTGTTCCGATCGGAATCACAATCTCCTTAATCGGTTT AATCGGGAACGttatttccgtcataatttGGTTCCACTTAAACCAATCCA AGTCAAGACGCAATAAATCAACCGCTCAATACTTTATCTCCTTAGCATTT TGCGATAGTGCGTTGCTGTTATTCTTTTTACTCCACGATTCATTACCAAG TCTGGTTTCTACCATCAAAAGCAATTATTATTACGCAGCAACATGGTGCT GGTTTCTATTCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCTGGGTC GTAGTTGGTGTCACCATCAATCGATACATCATGATTGCCTTTCCGACCAA GGTAAAAGTTTAGAATTTAATCTCGCAAGGTTgcgggttcaacccccagc cgggtcatactaaagattctcaaaatggtacttgatgcctctctgtttga ttctcagcaattaagagaaggatcaagggtagttggagcaatccagggag aaagagtggtgccctcccTTTACCTTCGGATAGTtagctatcaaaagagg agccttcgggtcgtcTCCGACTGCAGTCACAGACTTAAAAATTATACACA TCCCTTTCACAGCTGATTGTGAGTGGTTGCAATTGACATGTTTGGGCCAG TACAACGGTGTATTATACACTTCTGAGTGCTTTGATACGTATAAAAGCGA AACAAAATCCTATACTCAATTTAGTAGCACTAAGTCCTTATCGGTCATTA AACTGTCACAGGATCCCATAATAAGGTAAAGTCTCGATGACTCGAACCTA TACAACTTGAATATCTCCTAGCTCGAACAAGTTagctggtcccttcagtt agcAATGGCTttctcagctggcacacaacgttgtttcaacgtttatctaa cgttcacaacgtccaaataacgttagatgaacgttgaaacaacgttatga gCTAGCTGGGCGCTCCTCAATATGCCTGTTCGAGTTAttgagactccact gtataacgATTTATCTTATTGATTTTGTAGGTCCAGATTATTTACTCAGA TACCCGTTCTAAAATCGGAATTTTCGGCATCACACTATTCGCTTTCCTCG TCAATTTGCCACACTTCTTTACGTACCACGCCGTCAAAGACGGGGAAAAC GGTGACTATAAGATTACACATACGGAATACGGGGCCTCGGAAGCATCCAC TAATTATGAATTTTGGGCTCATTGCATAGCTCTTGTTTTGGGACCATGGG TCGTCATTGCGATCTTGAATGGTTTGataatcaagattttgaaaaaccaa ATGAAGAAATTTACTAAAGAAAAACGTAAGTATCAAAAGCAGTTTGCGCA AGCCATTCTAAGAATAAGATATTGGTCAGTCAAATCTAATGTAACTATGA TCTAATAAAAAATTAGTTATGAATTCTTTCAACTTTACCCTTTTAAAGAG TACTTGATTAAAAAACAACCCGAATTTAGTCAAAAAGTTCCATAATAATG TTATACCCTCTAAAACTTGGTTCAGCCTCAGCTACACTGTCATATTTTCA GACTTCGCAATTTTCAGTTTCATATTATCCTTGATTTGTAAATTAGGCCT CGTTTGTTAtaaaagagccccccccccagcagACCTTCAATCCAAGCAAT CACGCAATAtgttttcgaaattcacgcatttacgcaactcgtttaaaatt ttcacgcgttcacgcattcacgcatgtGAAAAAGCTCATTCAAGGATTCA CGTGCAGACCACTTGGGACCCCTATAAAACAAGTTATTTATAAAcattat aaacattttttttaatttttgatttttccaactAGCCACCAAGCAAATGC GACAAGAGCAACAAATGACACGAACTTTGCTTTTCATCACGTTTTCCTTC CTCATACTTTTGGCTTGGCAATGTGTTACTCAATGTTTTTGGATGCTTGG ATATGGGAAAGGTAAATNTTCCTCATACTTTTGGCTTGGCAATGTGTTAC TCAATGTTTTTGGATGCTTGGATATGGG

Coding sequence (CDS) from alignment at sc0003637:5730..10107+

>TCONS_00042733 ID=TCONS_00042733|Name=TCONS_00042733|organism=Clytia hemisphaerica|type=CDS|length=3540bp|location=Sequence derived from alignment at sc0003637:5730..10107+ (Clytia hemisphaerica)
ATGCCTAGGCTAAGACAATTAACAAACTATATGGGAGCTGCAGGACTTCA
CTGGATTTGTAGTGTTCCGATCGGAATCACAATCTCCTTAATCGGTTTAA
TCGGGAACGttatttccgtcataatttGGTTCCACTTAAACCAATCCAAG
TCAAGACGCAATAAATCAACCGCTCAATACTTTATCTCCTTAGCATTTTG
CGATAGTGCGTTGCTGTTATTCTTTTTACTCCACGATTCATTACCAAGTC
TGGTTTCTACCATCAAAAGCAATTATTATTACGCAGCAACATGGTGCTGG
TTTCTATTCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCTGGGTCGT
AGTTGGTGTCACCATCAATCGATACATCATGATTGCCTTTCCGACCAAGG
TCCAGATTATTTACTCAGATACCCGTTCTAAAATCGGAATTTTCGGCATC
ACACTATTCGCTTTCCTCGTCAATTTGCCACACTTCTTTACGTACCACGC
CGTCAAAGACGGGGAAAACGGTGACTATAAGATTACACATACGGAATACG
GGGCCTCGGAAGCATCCACTAATTATGAATTTTGGGCTCATTGCATAGCT
CTTGTTTTGGGACCATGGGTCGTCATTGCGATCTTGAATGGTTTGataat
caagattttgaaaaaccaaATGAAGAAATTTACTAAAGAAAAACCCACCA
AGCAAATGCGACAAGAGCAACAAATGACACGAACTTTGCTTTTCATCACG
TTTTCCTTCCTCATACTTTTGGCTTGGCAATGTGTTACTCAATGTTTTTG
GATGCTTGGATATGGGAAAGGTAAATNTTCCTCATACTTTTGGCTTGGCA
ATGTGTTACTCAATGTTTTTGGATGCTTGGATATGATGCCTAGGCTAAGA
CAATTAACAAACTATATGGGAGCTGCAGGACTTCACTGGATTTGTAGTGT
TCCGATCGGAATCACAATCTCCTTAATCGGTTTAATCGGGAACGttattt
ccgtcataatttGGTTCCACTTAAACCAATCCAAGTCAAGACGCAATAAA
TCAACCGCTCAATACTTTATCTCCTTAGCATTTTGCGATAGTGCGTTGCT
GTTATTCTTTTTACTCCACGATTCATTACCAAGTCTGGTTTCTACCATCA
AAAGCAATTATTATTACGCAGCAACATGGTGCTGGTTTCTATTCCCGATG
TTCTTTTTCGCATTGGTGTGCAGTATCTGGGTCGTAGTTGGTGTCACCAT
CAATCGATACATCATGATTGCCTTTCCGACCAAGGTCCAGATTATTTACT
CAGATACCCGTTCTAAAATCGGAATTTTCGGCATCACACTATTCGCTTTC
CTCGTCAATTTGCCACACTTCTTTACGTACCACGCCGTCAAAGACGGGGA
AAACGGTGACTATAAGATTACACATACGGAATACGGGGCCTCGGAAGCAT
CCACTAATTATGAATTTTGGGCTCATTGCATAGCTCTTGTTTTGGGACCA
TGGGTCGTCATTGCGATCTTGAATGGTTTGataatcaagattttgaaaaa
ccaaATGAAGAAATTTACTAAAGAAAAACCCACCAAGCAAATGCGACAAG
AGCAACAAATGACACGAACTTTGCTTTTCATCACGTTTTCCTTCCTCATA
CTTTTGGCTTGGCAATGTGTTACTCAATGTTTTTGGATGCTTGGATATGG
GAAAGGTAAATNTTCCTCATACTTTTGGCTTGGCAATGTGTTACTCAATG
TTTTTGGATGCTTGGATATGATGCCTAGGCTAAGACAATTAACAAACTAT
ATGGGAGCTGCAGGACTTCACTGGATTTGTAGTGTTCCGATCGGAATCAC
AATCTCCTTAATCGGTTTAATCGGGAACGttatttccgtcataatttGGT
TCCACTTAAACCAATCCAAGTCAAGACGCAATAAATCAACCGCTCAATAC
TTTATCTCCTTAGCATTTTGCGATAGTGCGTTGCTGTTATTCTTTTTACT
CCACGATTCATTACCAAGTCTGGTTTCTACCATCAAAAGCAATTATTATT
ACGCAGCAACATGGTGCTGGTTTCTATTCCCGATGTTCTTTTTCGCATTG
GTGTGCAGTATCTGGGTCGTAGTTGGTGTCACCATCAATCGATACATCAT
GATTGCCTTTCCGACCAAGGTCCAGATTATTTACTCAGATACCCGTTCTA
AAATCGGAATTTTCGGCATCACACTATTCGCTTTCCTCGTCAATTTGCCA
CACTTCTTTACGTACCACGCCGTCAAAGACGGGGAAAACGGTGACTATAA
GATTACACATACGGAATACGGGGCCTCGGAAGCATCCACTAATTATGAAT
TTTGGGCTCATTGCATAGCTCTTGTTTTGGGACCATGGGTCGTCATTGCG
ATCTTGAATGGTTTGataatcaagattttgaaaaaccaaATGAAGAAATT
TACTAAAGAAAAACCCACCAAGCAAATGCGACAAGAGCAACAAATGACAC
GAACTTTGCTTTTCATCACGTTTTCCTTCCTCATACTTTTGGCTTGGCAA
TGTGTTACTCAATGTTTTTGGATGCTTGGATATGGGAAAGGTAAATNTTC
CTCATACTTTTGGCTTGGCAATGTGTTACTCAATGTTTTTGGATGCTTGG
ATATGATGCCTAGGCTAAGACAATTAACAAACTATATGGGAGCTGCAGGA
CTTCACTGGATTTGTAGTGTTCCGATCGGAATCACAATCTCCTTAATCGG
TTTAATCGGGAACGttatttccgtcataatttGGTTCCACTTAAACCAAT
CCAAGTCAAGACGCAATAAATCAACCGCTCAATACTTTATCTCCTTAGCA
TTTTGCGATAGTGCGTTGCTGTTATTCTTTTTACTCCACGATTCATTACC
AAGTCTGGTTTCTACCATCAAAAGCAATTATTATTACGCAGCAACATGGT
GCTGGTTTCTATTCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCTGG
GTCGTAGTTGGTGTCACCATCAATCGATACATCATGATTGCCTTTCCGAC
CAAGGTCCAGATTATTTACTCAGATACCCGTTCTAAAATCGGAATTTTCG
GCATCACACTATTCGCTTTCCTCGTCAATTTGCCACACTTCTTTACGTAC
CACGCCGTCAAAGACGGGGAAAACGGTGACTATAAGATTACACATACGGA
ATACGGGGCCTCGGAAGCATCCACTAATTATGAATTTTGGGCTCATTGCA
TAGCTCTTGTTTTGGGACCATGGGTCGTCATTGCGATCTTGAATGGTTTG
ataatcaagattttgaaaaaccaaATGAAGAAATTTACTAAAGAAAAACC
CACCAAGCAAATGCGACAAGAGCAACAAATGACACGAACTTTGCTTTTCA
TCACGTTTTCCTTCCTCATACTTTTGGCTTGGCAATGTGTTACTCAATGT
TTTTGGATGCTTGGATATGGGAAAGGTAAATNTTCCTCATACTTTTGGCT
TGGCAATGTGTTACTCAATGTTTTTGGATGCTTGGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026536XLOC_026536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042733-exon-sc0003637-1491911889:5730..5850TCONS_00042733-exon-sc0003637-1491911889:5730..5850Clytia hemisphaericaexon
TCONS_00042733-exon-sc0003637-1510915933:5730..5850TCONS_00042733-exon-sc0003637-1510915933:5730..5850Clytia hemisphaericaexon
TCONS_00042733-exon-sc0003637-1575043694:5730..5850TCONS_00042733-exon-sc0003637-1575043694:5730..5850Clytia hemisphaericaexon
TCONS_00042733-exon-sc0003637-1491911889:8060..8430TCONS_00042733-exon-sc0003637-1491911889:8060..8430Clytia hemisphaericaexon
TCONS_00042733-exon-sc0003637-1510915933:8060..8430TCONS_00042733-exon-sc0003637-1510915933:8060..8430Clytia hemisphaericaexon
TCONS_00042733-exon-sc0003637-1575043694:8060..8430TCONS_00042733-exon-sc0003637-1575043694:8060..8430Clytia hemisphaericaexon
TCONS_00042733-exon-sc0003637-1491911889:9110..9404TCONS_00042733-exon-sc0003637-1491911889:9110..9404Clytia hemisphaericaexon
TCONS_00042733-exon-sc0003637-1510915933:9110..9404TCONS_00042733-exon-sc0003637-1510915933:9110..9404Clytia hemisphaericaexon
TCONS_00042733-exon-sc0003637-1575043694:9110..9404TCONS_00042733-exon-sc0003637-1575043694:9110..9404Clytia hemisphaericaexon
TCONS_00042733-exon-sc0003637-1491911889:9915..10107TCONS_00042733-exon-sc0003637-1491911889:9915..10107Clytia hemisphaericaexon
TCONS_00042733-exon-sc0003637-1510915933:9915..10107TCONS_00042733-exon-sc0003637-1510915933:9915..10107Clytia hemisphaericaexon
TCONS_00042733-exon-sc0003637-1575043694:9915..10107TCONS_00042733-exon-sc0003637-1575043694:9915..10107Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042733-proteinTCONS_00042733-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003637supercontigsc0003637:5730..10107 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.401103 0 0 0.171205 0 0 1.89826 4.19114 4.64502 3.76536 4.1776 5.28333 0 0 0 2.5399e-05 0.687157 0 0 0.268724 0.464368 2.69887 2.11835 1.58648 0 0.115465 0.488087 0.230642 0.0492605 0.612093
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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