|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042728 ID=TCONS_00042728|Name=TCONS_00042728|organism=Clytia hemisphaerica|type=transcript|length=725bp
GTGGAATTAACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGG
CTTGCTTCCAGCCAACGCAGGTCAAGCATCGAAAGTTAAGTCAAACTTAG
CAAAATACAGCCATCATAAAAAGGTTAGCGAAAAGTTGGCACCCAAAATG
GTTACTTTTGTCGATCGAAATGGCGTGGAATTAACACTCACTCCATCAAA
GTTTGAACAATTGNAGATGTGTGGCTTGCTTCCAGCCAACGCAGGTCAAC
CATCAAAAGTTGAATCAAGCTTAGCTAAAAACAgccatcataaaaaaGTT
AGCGAAAAGTTGGCACCCAAAATGGTTACTTTTGTCGATCGAAATGGCGT
GGAATTAACACTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGAT
TGCTTCCAGCCAACACAGGTCAACCATCAAAAGTTAAGTCAAACTTAGCA
AAAAACAgccatcataaaaaagttacCGAAAAGTTGGCGCCCAAGGTGGT
CACAGAAAACAAGAGCGAAGATGAACAAAGCCTTGGCATATCAAAAGAAC
GTTTAGCGTTCGCACAACAACTCATTAAGGAAGCCCAAGAGGCTCCGTTG
CCCGAAGATGACGGTCGATGGTGAACTCTTCTCCGCATCAAAAACATAAA
TAATAAACAACCAAAACCTACAAACTCCtgaaattattttgcattcAATG
TAAATATAAATCTGTATAATTAAAT Run BLAST on NCBI transcript from alignment at sc0003632:10438..11405- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042728 ID=TCONS_00042728|Name=TCONS_00042728|organism=Clytia hemisphaerica|type=transcript|length=968bp|location=Sequence derived from alignment at sc0003632:10438..11405- (Clytia hemisphaerica)
GTGGAATTAACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGG
CTTGCTTCCAGCCAACGCAGGTCAAGCATCGAAAGTTAAGTCAAACTTAG
CAAAATACAGCCATCATAAAAAGGTTAGCGAAAAGTTGGCACCCAAAATG
GTTACTTTTGTCGATCGAAATGGCGTGGAATTAACACTCACTCCATCAAA
GTTTGAACAATTGNAGATGGTCACCTTTGTGGATCGAAATGGTGTGGAAT
TAACAGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGCTTGCTT
CCAGCCAACGCAGGTCAACCATCAAAAGTTGAATCAAGCTTAGCTAAAAA
CAGCCATCATAAAAAAGTTAGCCAAAAGTTGGCTCCCAAAATGGTTACTT
TTGTCGATCGAAATGGCGTGGAGTTAACCGTCACTCCATCAAAGTTTGAA
CAATTAAAGAAGTGTGGCTTGCTTCCAGCCAACGCAGGCCAACCATCGAA
AGTTAAGTCAAACTTAGCAAAATACAGCCATCTTAAGAAGGTTAGCGAAA
AGTTGGCACCCAAAATGGTTACTTTTGTCGATCGAAATGGCGTGGAATTA
ACACTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGATTGCTTCC
AGCCAACACAGGTCAACCATCAAAAGTTAAGTCAAACTTAGCAAAAAACA
GCCATCATAAAAAAGTTACCGAAAAGTTGGCGCCCAAGGTGGTCACAGAA
AACAAGAGCGAAGATGAACAAAGCCTTGGCATATCAAAAGAACGTTTAGC
GTTCGCACAACAACTCATTAAGGAAGCCCAAGAGGCTCCGTTGCCCGAAG
ATGACGGTCGATGGTGAACTCTTCTCCGCATCAAAAACATAAATAATAAA
CAACCAAAACCTACAAACTCCTGAAATTATTTTGCATTCAATGTAAATAT
AAATCTGTATAATTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042728-exon-sc0003632-1575043694:11187..11405 | TCONS_00042728-exon-sc0003632-1575043694:11187..11405 | Clytia hemisphaerica | exon |
| TCONS_00042728-exon-sc0003632-1575043694:11040..11117 | TCONS_00042728-exon-sc0003632-1575043694:11040..11117 | Clytia hemisphaerica | exon |
| TCONS_00042728-exon-sc0003632-1575043694:10438..10865 | TCONS_00042728-exon-sc0003632-1575043694:10438..10865 | Clytia hemisphaerica | exon |
| TCONS_00042728-exon-sc0003632-1510915933:11187..11405 | TCONS_00042728-exon-sc0003632-1510915933:11187..11405 | Clytia hemisphaerica | exon |
| TCONS_00042728-exon-sc0003632-1510915933:11040..11117 | TCONS_00042728-exon-sc0003632-1510915933:11040..11117 | Clytia hemisphaerica | exon |
| TCONS_00042728-exon-sc0003632-1510915933:10438..10865 | TCONS_00042728-exon-sc0003632-1510915933:10438..10865 | Clytia hemisphaerica | exon |
| TCONS_00042728-exon-sc0003632-1491911889:11187..11405 | TCONS_00042728-exon-sc0003632-1491911889:11187..11405 | Clytia hemisphaerica | exon |
| TCONS_00042728-exon-sc0003632-1491911889:11040..11117 | TCONS_00042728-exon-sc0003632-1491911889:11040..11117 | Clytia hemisphaerica | exon |
| TCONS_00042728-exon-sc0003632-1491911889:10438..10865 | TCONS_00042728-exon-sc0003632-1491911889:10438..10865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003632 | supercontig | sc0003632:10438..11405 - |
Blast
The following BLAST results are available for this feature:
|
