TCONS_00042727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042727
Unique NameTCONS_00042727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042727 ID=TCONS_00042727|Name=TCONS_00042727|organism=Clytia hemisphaerica|type=transcript|length=725bp
GTGGAATTAACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGG
CTTGCTTCCAGCCAACGCAGGTCAAGCATCGAAAGTTAAGTCAAACTTAG
CAAAATACAGCCATCATAAAAAGGTTAGCGAAAAGTTGGCACCCAAAATG
GTTACTTTTGTCGATCGAAATGGCGTGGAATTAACACTCACTCCATCAAA
GTTTGAACAATTGNAGATGTGTGGCTTGCTTCCAGCCAACGCAGGTCAAC
CATCAAAAGTTGAATCAAGCTTAGCTAAAAACAgccatcataaaaaagtt
agCCAAAAGTTGGCTCCCAAAATGGTTACTTTTGTCGATCGAAATGGCGT
GGAGTTAACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGCT
TGCTTCCAGCCAACGCAGGTCAACCATCAAAAGTTAAGTCAAACTTAGCA
AAAAACAgccatcataaaaaagttacCGAAAAGTTGGCGCCCAAGGTGGT
CACAGAAAACAAGAGCGAAGATGAACAAAGCCTTGGCATATCAAAAGAAC
GTTTAGCGTTCGCACAACAACTCATTAAGGAAGCCCAAGAGGCTCCGTTG
CCCGAAGATGACGGTCGATGGTGAACTCTTCTCCGCATCAAAAACATAAA
TAATAAACAACCAAAACCTACAAACTCCtgaaattattttgcattcAATG
TAAATATAAATCTGTATAATTAAAT
Run BLAST on NCBI

protein sequence of TCONS_00042727-protein

>TCONS_00042727-protein ID=TCONS_00042727-protein|Name=TCONS_00042727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
VELTVTPSKFEQLKKCGLLPANAGQASKVKSNLAKYSHHKKVSEKLAPKM
VTFVDRNGVELTLTPSKFEQLXMCGLLPANAGQPSKVESSLAKNSHHKKV
SQKLAPKMVTFVDRNGVELTVTPSKFEQLKKCGLLPANAGQPSKVKSNLA
KNSHHKKVTEKLAPKVVTENKSEDEQSLGISKERLAFAQQLIKEAQEAPL
PEDDGRW
Run BLAST on NCBI

transcript from alignment at sc0003632:10438..11405-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042727 ID=TCONS_00042727|Name=TCONS_00042727|organism=Clytia hemisphaerica|type=transcript|length=968bp|location=Sequence derived from alignment at sc0003632:10438..11405- (Clytia hemisphaerica)
GTGGAATTAACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGG
CTTGCTTCCAGCCAACGCAGGTCAAGCATCGAAAGTTAAGTCAAACTTAG
CAAAATACAGCCATCATAAAAAGGTTAGCGAAAAGTTGGCACCCAAAATG
GTTACTTTTGTCGATCGAAATGGCGTGGAATTAACACTCACTCCATCAAA
GTTTGAACAATTGNAGATGGTCACCTTTGTGGATCGAAATGGTGTGGAAT
TAACAGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGCTTGCTT
CCAGCCAACGCAGGTCAACCATCAAAAGTTGAATCAAGCTTAGCTAAAAA
CAGCCATCATAAAAAAGTTAGCCAAAAGTTGGCTCCCAAAATGGTTACTT
TTGTCGATCGAAATGGCGTGGAGTTAACCGTCACTCCATCAAAGTTTGAA
CAATTAAAGAAGTGTGGCTTGCTTCCAGCCAACGCAGGCCAACCATCGAA
AGTTAAGTCAAACTTAGCAAAATACAGCCATCTTAAGAAGGTTAGCGAAA
AGTTGGCACCCAAAATGGTTACTTTTGTCGATCGAAATGGCGTGGAATTA
ACACTCACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGATTGCTTCC
AGCCAACACAGGTCAACCATCAAAAGTTAAGTCAAACTTAGCAAAAAACA
GCCATCATAAAAAAGTTACCGAAAAGTTGGCGCCCAAGGTGGTCACAGAA
AACAAGAGCGAAGATGAACAAAGCCTTGGCATATCAAAAGAACGTTTAGC
GTTCGCACAACAACTCATTAAGGAAGCCCAAGAGGCTCCGTTGCCCGAAG
ATGACGGTCGATGGTGAACTCTTCTCCGCATCAAAAACATAAATAATAAA
CAACCAAAACCTACAAACTCCTGAAATTATTTTGCATTCAATGTAAATAT
AAATCTGTATAATTAAAT

Coding sequence (CDS) from alignment at sc0003632:10438..11405-

>TCONS_00042727 ID=TCONS_00042727|Name=TCONS_00042727|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0003632:10438..11405- (Clytia hemisphaerica)
GTCAACCATCAAAAGTTAAGTCAAACTTAGCAAAAAACAGCCATCATAAA
AAAGTTACCGAAAAGTTGGCGCCCAAGGTGGTCACAGAAAACAAGAGCGA
AGATGAACAAAGCCTTGGCATATCAAAAGAACGTTTAGCGTTCGCACAAC
AACTCATTAAGGAAGCCCAAGAGGCTCCGTTGCCCGAAGATGACGGTCGA
TGGTGATGTGGCTTGCTTCCAGCCAACGCAGGTCAACCATCAAAAGTTGA
ATCAAGCTTAGCTAAAAACAGCCATCATAAAAAAGTTAGCCAAAAGTTGG
CTCCCAAAATGGTTACTTTTGTCGATCGAAATGGCGTGGAGTTAACCGTC
ACTCCATCAAAGTTTGAACAATTAAAGAAGTGTGGCTTGCTTCCAGCCAA
CGCAGGTGGAATTAACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAG
TGTGGCTTGCTTCCAGCCAACGCAGGTCAAGCATCGAAAGTTAAGTCAAA
CTTAGCAAAATACAGCCATCATAAAAAGGTTAGCGAAAAGTTGGCACCCA
AAATGGTTACTTTTGTCGATCGAAATGGCGTGGAATTAACACTCACTCCA
TCAAAGTTTGAACAATTGNAGATGGTCAACCATCAAAAGTTAAGTCAAAC
TTAGCAAAAAACAGCCATCATAAAAAAGTTACCGAAAAGTTGGCGCCCAA
GGTGGTCACAGAAAACAAGAGCGAAGATGAACAAAGCCTTGGCATATCAA
AAGAACGTTTAGCGTTCGCACAACAACTCATTAAGGAAGCCCAAGAGGCT
CCGTTGCCCGAAGATGACGGTCGATGGTGATGTGGCTTGCTTCCAGCCAA
CGCAGGTCAACCATCAAAAGTTGAATCAAGCTTAGCTAAAAACAGCCATC
ATAAAAAAGTTAGCCAAAAGTTGGCTCCCAAAATGGTTACTTTTGTCGAT
CGAAATGGCGTGGAGTTAACCGTCACTCCATCAAAGTTTGAACAATTAAA
GAAGTGTGGCTTGCTTCCAGCCAACGCAGGTGGAATTAACCGTCACTCCA
TCAAAGTTTGAACAATTAAAGAAGTGTGGCTTGCTTCCAGCCAACGCAGG
TCAAGCATCGAAAGTTAAGTCAAACTTAGCAAAATACAGCCATCATAAAA
AGGTTAGCGAAAAGTTGGCACCCAAAATGGTTACTTTTGTCGATCGAAAT
GGCGTGGAATTAACACTCACTCCATCAAAGTTTGAACAATTGNAGATGGT
CAACCATCAAAAGTTAAGTCAAACTTAGCAAAAAACAGCCATCATAAAAA
AGTTACCGAAAAGTTGGCGCCCAAGGTGGTCACAGAAAACAAGAGCGAAG
ATGAACAAAGCCTTGGCATATCAAAAGAACGTTTAGCGTTCGCACAACAA
CTCATTAAGGAAGCCCAAGAGGCTCCGTTGCCCGAAGATGACGGTCGATG
GTGATGTGGCTTGCTTCCAGCCAACGCAGGTCAACCATCAAAAGTTGAAT
CAAGCTTAGCTAAAAACAGCCATCATAAAAAAGTTAGCCAAAAGTTGGCT
CCCAAAATGGTTACTTTTGTCGATCGAAATGGCGTGGAGTTAACCGTCAC
TCCATCAAAGTTTGAACAATTAAAGAAGTGTGGCTTGCTTCCAGCCAACG
CAGGTGGAATTAACCGTCACTCCATCAAAGTTTGAACAATTAAAGAAGTG
TGGCTTGCTTCCAGCCAACGCAGGTCAAGCATCGAAAGTTAAGTCAAACT
TAGCAAAATACAGCCATCATAAAAAGGTTAGCGAAAAGTTGGCACCCAAA
ATGGTTACTTTTGTCGATCGAAATGGCGTGGAATTAACACTCACTCCATC
AAAGTTTGAACAATTGNAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026532XLOC_026532Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042727-proteinTCONS_00042727-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042727-exon-sc0003632-1575043694:11187..11405TCONS_00042727-exon-sc0003632-1575043694:11187..11405Clytia hemisphaericaexon
TCONS_00042727-exon-sc0003632-1575043694:10919..11117TCONS_00042727-exon-sc0003632-1575043694:10919..11117Clytia hemisphaericaexon
TCONS_00042727-exon-sc0003632-1575043694:10438..10744TCONS_00042727-exon-sc0003632-1575043694:10438..10744Clytia hemisphaericaexon
TCONS_00042727-exon-sc0003632-1510915933:11187..11405TCONS_00042727-exon-sc0003632-1510915933:11187..11405Clytia hemisphaericaexon
TCONS_00042727-exon-sc0003632-1510915933:10919..11117TCONS_00042727-exon-sc0003632-1510915933:10919..11117Clytia hemisphaericaexon
TCONS_00042727-exon-sc0003632-1510915933:10438..10744TCONS_00042727-exon-sc0003632-1510915933:10438..10744Clytia hemisphaericaexon
TCONS_00042727-exon-sc0003632-1491911889:11187..11405TCONS_00042727-exon-sc0003632-1491911889:11187..11405Clytia hemisphaericaexon
TCONS_00042727-exon-sc0003632-1491911889:10919..11117TCONS_00042727-exon-sc0003632-1491911889:10919..11117Clytia hemisphaericaexon
TCONS_00042727-exon-sc0003632-1491911889:10438..10744TCONS_00042727-exon-sc0003632-1491911889:10438..10744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003632supercontigsc0003632:10438..11405 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0439214	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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