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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042721 ID=TCONS_00042721|Name=TCONS_00042721|organism=Clytia hemisphaerica|type=transcript|length=1339bp
ctttccaactgtagtttaaggcgcctaaaaatcaattgtggtgttcaaaa
ttacaccgggaactcccctttgtctcaaatatttcttgaaggattgtagT
GACTCACCAACGAAACAGACGACCGTACAACTCGCCCCATGCGGTTGCCC
ACTGAGAGCCGATTGCCCACTAACCCCAACCAAATTACCATACCCCGCTA
CCGAAGAACATCGTCAGGACTTAGAACAATGGTTACTACAATACTACTCA
TCCAGCGCCTTCAATGTCTGCCCACACCAAAAACTACAGATGATGACCGG
AGAGAAATTCAACATAACCTTTAAACCAGACATCACACCACGCGCGATAC
ACAAACCCATACCAGTCCCCCATCATTGGAAGGAGAAAGTTAAGAAGCAA
CTCGACGCCAACGTTGCTTTGGGCATCATCGAACCCGTACCGCAGGGTGT
CCCGACGCACTGATGTTCCCGCATGGTAGTTGTATCTAAAAAAGACGGCT
CGCCGCGCCAAACGGTTGACCTACAAGCCCTCAACAAAGCCACACTTCGA
GAAACACACCACACACCTACACCATTCCACATCGTCAGTTCAATCCCTCC
GAGAACGAAAAAGACTATTATTGATGTGTGGAATGGCTATCACAGCGTTC
CACTAGCATCAGAGTCATGCGAAGCTACCACCTTTATCACCGAATGGGGA
CACTATCGCTGCAAGCGCGCTCCACAAGACTTCCATGGCTCAAACGATGG
TTATACTAAAAGATTTGATGATATAACTGTCGATTTTCCCCGTACCATAA
GATGTATTGATGATTCACTACTGTATGATAATGACATTTCGAACTCCTTT
TGGCACATCATAGCATACATTGAACTCTGCGCACGTAACGGGATCGTATT
TAACcccaaaaaattcaaattcgcACACAACACCACTGAATTTGCTGGCT
TCGATGTCACACCTGAAGATTTCAGACCTACCGAGAGGATCATGAAAGCG
ATTCTCGAATTCCCTACGCCAAAGAACATATCAGACATCCGATCATGGTT
CAGTCTAGTTGCACAAGTATCCTACGCATTCGCCCAAGCTCCCGTGATGG
CACCATTCCGAGAGCTCCTAAGTAAAAAGACCCTGTTTTACTGGGACGAG
ACACTTCAATCGCTATTTGACAAAACCAAACACGTGATTATCGATTCGAT
CAAGGACGGAGTGCAGTCATTCTCTACAACTTGAAAAGCCGAGAAAAAAC
ACTCCATTACCAATTCGTCGTGAAAGGGATCCCAGGGGTGAAAAACATCA
GACCGAATACAGTATCAAGAATCCCACCTGTTGTCAGCT Run BLAST on NCBI protein sequence of TCONS_00042721-protein >TCONS_00042721-protein ID=TCONS_00042721-protein|Name=TCONS_00042721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MVVVSKKDGSPRQTVDLQALNKATLRETHHTPTPFHIVSSIPPRTKKTII
DVWNGYHSVPLASESCEATTFITEWGHYRCKRAPQDFHGSNDGYTKRFDD
ITVDFPRTIRCIDDSLLYDNDISNSFWHIIAYIELCARNGIVFNPKKFKF
AHNTTEFAGFDVTPEDFRPTERIMKAILEFPTPKNISDIRSWFSLVAQVS
YAFAQAPVMAPFRELLSKKTLFYWDETLQSLFDKTKHVIIDSIKDGVQSF
STT Run BLAST on NCBI transcript from alignment at sc0003631:6181..7519 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042721 ID=TCONS_00042721|Name=TCONS_00042721|organism=Clytia hemisphaerica|type=transcript|length=1339bp|location=Sequence derived from alignment at sc0003631:6181..7519 (Clytia hemisphaerica)
AGCTGACAACAGGTGGGATTCTTGATACTGTATTCGGTCTGATGTTTTTC
ACCCCTGGGATCCCTTTCACGACGAATTGGTAATGGAGTGTTTTTTCTCG
GCTTTTCAAGTTGTAGAGAATGACTGCACTCCGTCCTTGATCGAATCGAT
AATCACGTGTTTGGTTTTGTCAAATAGCGATTGAAGTGTCTCGTCCCAGT
AAAACAGGGTCTTTTTACTTAGGAGCTCTCGGAATGGTGCCATCACGGGA
GCTTGGGCGAATGCGTAGGATACTTGTGCAACTAGACTGAACCATGATCG
GATGTCTGATATGTTCTTTGGCGTAGGGAATTCGAGAATCGCTTTCATGA
TCCTCTCGGTAGGTCTGAAATCTTCAGGTGTGACATCGAAGCCAGCAAAT
TCAGTGGTGTTGTGTgcgaatttgaattttttgggGTTAAATACGATCCC
GTTACGTGCGCAGAGTTCAATGTATGCTATGATGTGCCAAAAGGAGTTCG
AAATGTCATTATCATACAGTAGTGAATCATCAATACATCTTATGGTACGG
GGAAAATCGACAGTTATATCATCAAATCTTTTAGTATAACCATCGTTTGA
GCCATGGAAGTCTTGTGGAGCGCGCTTGCAGCGATAGTGTCCCCATTCGG
TGATAAAGGTGGTAGCTTCGCATGACTCTGATGCTAGTGGAACGCTGTGA
TAGCCATTCCACACATCAATAATAGTCTTTTTCGTTCTCGGAGGGATTGA
ACTGACGATGTGGAATGGTGTAGGTGTGTGGTGTGTTTCTCGAAGTGTGG
CTTTGTTGAGGGCTTGTAGGTCAACCGTTTGGCGCGGCGAGCCGTCTTTT
TTAGATACAACTACCATGCGGGAACATCAGTGCGTCGGGACACCCTGCGG
TACGGGTTCGATGATGCCCAAAGCAACGTTGGCGTCGAGTTGCTTCTTAA
CTTTCTCCTTCCAATGATGGGGGACTGGTATGGGTTTGTGTATCGCGCGT
GGTGTGATGTCTGGTTTAAAGGTTATGTTGAATTTCTCTCCGGTCATCAT
CTGTAGTTTTTGGTGTGGGCAGACATTGAAGGCGCTGGATGAGTAGTATT
GTAGTAACCATTGTTCTAAGTCCTGACGATGTTCTTCGGTAGCGGGGTAT
GGTAATTTGGTTGGGGTTAGTGGGCAATCGGCTCTCAGTGGGCAACCGCA
TGGGGCGAGTTGTACGGTCGTCTGTTTCGTTGGTGAGTCActacaatcct
tcaagaaatatttgagacaaaggggagttcccggtgtaattttgaacacc
acaattgatttttaggcgccttaaactacagttggaaag Coding sequence (CDS) from alignment at sc0003631:6181..7519 >TCONS_00042721 ID=TCONS_00042721|Name=TCONS_00042721|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0003631:6181..7519 (Clytia hemisphaerica)
TCAAGTTGTAGAGAATGACTGCACTCCGTCCTTGATCGAATCGATAATCA
CGTGTTTGGTTTTGTCAAATAGCGATTGAAGTGTCTCGTCCCAGTAAAAC
AGGGTCTTTTTACTTAGGAGCTCTCGGAATGGTGCCATCACGGGAGCTTG
GGCGAATGCGTAGGATACTTGTGCAACTAGACTGAACCATGATCGGATGT
CTGATATGTTCTTTGGCGTAGGGAATTCGAGAATCGCTTTCATGATCCTC
TCGGTAGGTCTGAAATCTTCAGGTGTGACATCGAAGCCAGCAAATTCAGT
GGTGTTGTGTgcgaatttgaattttttgggGTTAAATACGATCCCGTTAC
GTGCGCAGAGTTCAATGTATGCTATGATGTGCCAAAAGGAGTTCGAAATG
TCATTATCATACAGTAGTGAATCATCAATACATCTTATGGTACGGGGAAA
ATCGACAGTTATATCATCAAATCTTTTAGTATAACCATCGTTTGAGCCAT
GGAAGTCTTGTGGAGCGCGCTTGCAGCGATAGTGTCCCCATTCGGTGATA
AAGGTGGTAGCTTCGCATGACTCTGATGCTAGTGGAACGCTGTGATAGCC
ATTCCACACATCAATAATAGTCTTTTTCGTTCTCGGAGGGATTGAACTGA
CGATGTGGAATGGTGTAGGTGTGTGGTGTGTTTCTCGAAGTGTGGCTTTG
TTGAGGGCTTGTAGGTCAACCGTTTGGCGCGGCGAGCCGTCTTTTTTAGA
TACAACTACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042721-exon-sc0003631-1491911889:6181..7519 | TCONS_00042721-exon-sc0003631-1491911889:6181..7519 | Clytia hemisphaerica | exon |
| TCONS_00042721-exon-sc0003631-1510915933:6181..7519 | TCONS_00042721-exon-sc0003631-1510915933:6181..7519 | Clytia hemisphaerica | exon |
| TCONS_00042721-exon-sc0003631-1575043694:6181..7519 | TCONS_00042721-exon-sc0003631-1575043694:6181..7519 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003631 | supercontig | sc0003631:6181..7519 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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