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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042720 ID=TCONS_00042720|Name=TCONS_00042720|organism=Clytia hemisphaerica|type=transcript|length=1166bp
TAAAACCGGAACTCCAAAAGCCTTATACAACTTCTGGCCGCTCCGTAAAG
AACTCTATACCTTACAGAACATAGTGTTTATTGCAAACAAGCCATTGATT
CCAAAATCTCTCAGACGAGACATCCTACACAAACTGCACCTCGGTCATCA
AGGTGTATCAATGATGAAGTCCAACGCCCGTCAACGATTCTTTTGGTCAC
ACATGTATGCAGACATCAACAGCACCCGTTTGAACTGTCAACGCTGCAAC
CAAACAGCGCCCTCCCAACCAAAAGCACCACTACAACAAAGCGAAGACCC
CAAATATCCATTCCAACAAACAGTAACCGACCTCCTTCACATGGTTGGAC
ACAACTTCATCATTTACGCAGACCGTTTTTCTGGCTGGACTGAAGTCGCT
GACGCCACCGCCATACGCAACACTTTGCGTCAATACTTTGATACGAAATT
TCATTNCACCGCCATACGCAACACCTTGCGTCGATACTTTGAGACGTTTG
GTGTACCTGAGGAGATTTCATCGGACGGGGGCCCACCATTCAATTCTAAC
GAATACGCCACTTTTCTTAAAGACTGGAACGTAACCCATCGTCTTTCATC
CGCCTATTACCCCCAAAGCAACGGGAGAGCTGAAGCAGCCGTTAAGACTT
ATTAAGCGTATCCTCACCACCAATGTCAGCAGCACTGGATTGCTGGACAC
TGATGCGGTTGCCAAGGCTCTACTTCTACACAGAAACACGCCATCACCCG
ATATCGGTGCATCCCCTGCAGAGCTTCTTTTTGGCAGACCACTCAACAAT
CACCTACCAAAACCTGTTCCGCCACGGAAAATTTGGTCGGAATTAGGAGA
CGCATGCAAAGAAGCCTTTGCAAAACGCCGTGCCCGAGTATTGAAACCAC
CAGGAGATCTGTCCCGCACACACCTTTAGATGTGGGGAGCTCCGTTGCCA
TCCAGAATCAAAATGGTCAACATCCTCTTTGATGGGATCGCACAGGCATC
ATTTCTGAAAGGCTCCCTCATGATCAATATCGTGTACTGGTCGACGGTAG
TAGACGAGCAACCCTCAAAAATCGTCGCTTTCTTCGTCCAGTTTCTGAAC
AAACTCGGAACATGATAGACGAAGAACCAGAAACTGTTACTGTTACATCA
AGGACTGTAATACCCG Run BLAST on NCBI protein sequence of TCONS_00042720-protein >TCONS_00042720-protein ID=TCONS_00042720-protein|Name=TCONS_00042720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
KTGTPKALYNFWPLRKELYTLQNIVFIANKPLIPKSLRRDILHKLHLGHQ
GVSMMKSNARQRFFWSHMYADINSTRLNCQRCNQTAPSQPKAPLQQSEDP
KYPFQQTVTDLLHMVGHNFIIYADRFSGWTEVADATAIRNTLRQYFDTKF
HXTAIRNTLRRYFETFGVPEEISSDGGPPFNSNEYATFLKDWNVTHRLSS
AYYPQSNGRAEAAVKTY Run BLAST on NCBI transcript from alignment at sc0003631:4867..6032 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042720 ID=TCONS_00042720|Name=TCONS_00042720|organism=Clytia hemisphaerica|type=transcript|length=1166bp|location=Sequence derived from alignment at sc0003631:4867..6032 (Clytia hemisphaerica)
CGGGTATTACAGTCCTTGATGTAACAGTAACAGTTTCTGGTTCTTCGTCT
ATCATGTTCCGAGTTTGTTCAGAAACTGGACGAAGAAAGCGACGATTTTT
GAGGGTTGCTCGTCTACTACCGTCGACCAGTACACGATATTGATCATGAG
GGAGCCTTTCAGAAATGATGCCTGTGCGATCCCATCAAAGAGGATGTTGA
CCATTTTGATTCTGGATGGCAACGGAGCTCCCCACATCTAAAGGTGTGTG
CGGGACAGATCTCCTGGTGGTTTCAATACTCGGGCACGGCGTTTTGCAAA
GGCTTCTTTGCATGCGTCTCCTAATTCCGACCAAATTTTCCGTGGCGGAA
CAGGTTTTGGTAGGTGATTGTTGAGTGGTCTGCCAAAAAGAAGCTCTGCA
GGGGATGCACCGATATCGGGTGATGGCGTGTTTCTGTGTAGAAGTAGAGC
CTTGGCAACCGCATCAGTGTCCAGCAATCCAGTGCTGCTGACATTGGTGG
TGAGGATACGCTTAATAAGTCTTAACGGCTGCTTCAGCTCTCCCGTTGCT
TTGGGGGTAATAGGCGGATGAAAGACGATGGGTTACGTTCCAGTCTTTAA
GAAAAGTGGCGTATTCGTTAGAATTGAATGGTGGGCCCCCGTCCGATGAA
ATCTCCTCAGGTACACCAAACGTCTCAAAGTATCGACGCAAGGTGTTGCG
TATGGCGGTGNAATGAAATTTCGTATCAAAGTATTGACGCAAAGTGTTGC
GTATGGCGGTGGCGTCAGCGACTTCAGTCCAGCCAGAAAAACGGTCTGCG
TAAATGATGAAGTTGTGTCCAACCATGTGAAGGAGGTCGGTTACTGTTTG
TTGGAATGGATATTTGGGGTCTTCGCTTTGTTGTAGTGGTGCTTTTGGTT
GGGAGGGCGCTGTTTGGTTGCAGCGTTGACAGTTCAAACGGGTGCTGTTG
ATGTCTGCATACATGTGTGACCAAAAGAATCGTTGACGGGCGTTGGACTT
CATCATTGATACACCTTGATGACCGAGGTGCAGTTTGTGTAGGATGTCTC
GTCTGAGAGATTTTGGAATCAATGGCTTGTTTGCAATAAACACTATGTTC
TGTAAGGTATAGAGTTCTTTACGGAGCGGCCAGAAGTTGTATAAGGCTTT
TGGAGTTCCGGTTTTA Coding sequence (CDS) from alignment at sc0003631:4867..6032 >TCONS_00042720 ID=TCONS_00042720|Name=TCONS_00042720|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0003631:4867..6032 (Clytia hemisphaerica)
TTAATAAGTCTTAACGGCTGCTTCAGCTCTCCCGTTGCTTTGGGGGTAAT
AGGCGGATGAAAGACGATGGGTTACGTTCCAGTCTTTAAGAAAAGTGGCG
TATTCGTTAGAATTGAATGGTGGGCCCCCGTCCGATGAAATCTCCTCAGG
TACACCAAACGTCTCAAAGTATCGACGCAAGGTGTTGCGTATGGCGGTGN
AATGAAATTTCGTATCAAAGTATTGACGCAAAGTGTTGCGTATGGCGGTG
GCGTCAGCGACTTCAGTCCAGCCAGAAAAACGGTCTGCGTAAATGATGAA
GTTGTGTCCAACCATGTGAAGGAGGTCGGTTACTGTTTGTTGGAATGGAT
ATTTGGGGTCTTCGCTTTGTTGTAGTGGTGCTTTTGGTTGGGAGGGCGCT
GTTTGGTTGCAGCGTTGACAGTTCAAACGGGTGCTGTTGATGTCTGCATA
CATGTGTGACCAAAAGAATCGTTGACGGGCGTTGGACTTCATCATTGATA
CACCTTGATGACCGAGGTGCAGTTTGTGTAGGATGTCTCGTCTGAGAGAT
TTTGGAATCAATGGCTTGTTTGCAATAAACACTATGTTCTGTAAGGTATA
GAGTTCTTTACGGAGCGGCCAGAAGTTGTATAAGGCTTTTGGAGTTCCGG
TTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042720-exon-sc0003631-1491911889:4867..6032 | TCONS_00042720-exon-sc0003631-1491911889:4867..6032 | Clytia hemisphaerica | exon |
| TCONS_00042720-exon-sc0003631-1510915933:4867..6032 | TCONS_00042720-exon-sc0003631-1510915933:4867..6032 | Clytia hemisphaerica | exon |
| TCONS_00042720-exon-sc0003631-1575043694:4867..6032 | TCONS_00042720-exon-sc0003631-1575043694:4867..6032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003631 | supercontig | sc0003631:4867..6032 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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