TCONS_00042716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042716
Unique NameTCONS_00042716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1047

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042716 ID=TCONS_00042716|Name=TCONS_00042716|organism=Clytia hemisphaerica|type=transcript|length=1047bp
aaacaaaaaaatgaattctgttgcattttctttttcttcttcaatttcaa
tttcaattttcgaaaaacgcGTCTGCAAAACATGAGGATAATACCAATAC
TTCCTCTCATTGGATATTTCTATCTTCTTGCATGGATTTGTCAAACTGCA
TGTGACCGAacaaagACTGGCGAAGTACCGAAAAACAACCATGGCTTTAA
TCCAGCTGTTCTGATTGGTGAAAAAGAGAAAGAAGTAAAACGAAACATTC
TTATTGCGATCGTACCAATTCTTTCACCCGAATGGAGCGTTCAACTGGAT
ATGAGGTGGTACAACGAGACAATAATAAGCACAGATTCGAGGTACGCTTG
CAGTATTTTACAATTGTCGGCTAATGGTTTGGAATACGGTTACGGTGGCC
GTGTCCCTTTTATTGCAATGGGTAAGACTTCTAAAAAGTTTGCAATATCG
TCTGCTGTGAACGGAAACATCAATCATATAATACCGCCACCACCACCTAC
CGTTACTCTAAACAAAACGTACCACGTCGAGGTTCAACAACGATATGTCA
GTAATGGTAATTACAGATATTTCATCATGATTGATGGAGAAGAAATTTAC
AGTGTACTAAACACTGACGCTCGGCAGTTTTACAATGTTCATGTGTATGC
AGGAAACCCGTGGAATGACCCTTGCCCTGTGTACATCAGTAATTTGAaat
taacaaactttttgtAATAATTAATATTATCGTCCACCTCTAAGCAAAAG
TTTGATGCATATTAGACAAAGCAAAGCTGAATATCATCAAGCGAGACTGG
AAATTCTTAGATATNAATATTAGACAAAGCAAAGCTGAATATCATCAAGC
GAGACTGGAAATTCTTagatatccgatttttcttgtcgaagATTTGTTTA
CTATCGTTCGTTAGAGGTATAGTAAACTactgaaaatatatattcaCAAA
GTTTACAACCGCAATGGGTGGAATCGGAGAATAATAGTGGTGACAGAGAT
TGGAACAAACAAAGTAAACATCTCCGTAACTGTGAACTCCACCCCNN
Run BLAST on NCBI

protein sequence of TCONS_00042716-protein

>TCONS_00042716-protein ID=TCONS_00042716-protein|Name=TCONS_00042716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
KQKNEFCCIFFFFFNFNFNFRKTRLQNMRIIPILPLIGYFYLLAWICQTA
CDRTKTGEVPKNNHGFNPAVLIGEKEKEVKRNILIAIVPILSPEWSVQLD
MRWYNETIISTDSRYACSILQLSANGLEYGYGGRVPFIAMGKTSKKFAIS
SAVNGNINHIIPPPPPTVTLNKTYHVEVQQRYVSNGNYRYFIMIDGEEIY
SVLNTDARQFYNVHVYAGNPWNDPCPVYISNLKLTNFL
Run BLAST on NCBI

transcript from alignment at sc0003622:1410..5051+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042716 ID=TCONS_00042716|Name=TCONS_00042716|organism=Clytia hemisphaerica|type=transcript|length=3642bp|location=Sequence derived from alignment at sc0003622:1410..5051+ (Clytia hemisphaerica)
aaacaaaaaaatgaattctgttgcattttctttttcttcttcaatttcaa
tttcaattttcgaaaaacgcGTCTGCAAAACATGAGGATAATACCAATAC
TTCCTCTCATTGGATATTTCTATCTTCTTGCATGGATTTGTCAAACTGCA
TGTGACCGAacaaaggtttgtttttgtttgactTATTAAATTACCAGCtt
gcacacaacattgtttcaacgttcatttaaagTCTCCTGCCACCATACCT
CTAATAAGAACTGATTATGTTTTCAGACTGGCGAAGTACCGAAAAACAAC
CATGGCTTTAATCCAGCTGTTCTGATTGGTGAAAAAGGTAGATTcccttt
ttttaattacaaaattaACTTTAAAGACGGAAAAGAAAGCCTTTCAGAGC
CTTTCCCCCTTCGGCGCAACGCGATCAATACAgtatttttagaaattctt
ttattcattctgctttgtcagcatagaggcACGCTTCCTTTATTtatcat
ataaaaaaatatctttaaagggAAAACATTTTTAGAGGGAATTGGCAGAT
GACGAAAAATGATGTCACtcagcttgatgctcagcagCTATGGAAGGTCA
GGGATGTAGCTTTCCATTGAATGTTAGGGTAGTCTTACCATTTACTGCGT
TCAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGgacagatcgttagaaaaatatgggtcggtcggtcggcaa
aataagaataaatttttcatttatcagggttggtaaggtaccgagaaaat
tgtccaaaaagtatctggatcaaaaattcaatttgttttttatcttcgat
taagatcataataaaattttagtgtatggaatgctttttgtgatttttca
atttcttgaattaattttcagctttattcaagtttaattcttacaaataa
ctagtgtgtaaaatatattgtagtggaaattcgatattattattttNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtaactgcaattttggacattttcta
cagacaccaccacccttgcagttattccatagtgtactaactgattttac
cctcaaaattggtgtataccacccctaaaaatgccaaatttgacaatttt
ttcactaaattcctcatttttgataccattacagggtacgtcttattaac
gaccgttcaagagttaaacatctcaatcattttccaagtttgttaaaata
tctttcatgccttgattgaagaaaaaattttgtgattttttttgactttt
gaaaaaaatgttttgaatctttttgcttccggaatttttgaaagcctaaa
attttaagtgaaaaatgtgctcacttagtacaccatatcctaccaaaatc
gacaattttgggcttaggcaccatCCATGTtacagttagtccactggtgg
agtaactgttttcccaaattttgctttatataccaccacggtagtaattg
tcatagtgtttatataataactgcatgacccccccccctgattggCCTCG
CCTTATATGTTATAATTTCAGAGAAAGAAGTAAAACGAAACATTCTTATT
GCGATCGTACCAATTCTTTCACCCGAATGGAGCGTTCAACTGGATATGAG
GTGGTACAACGAGACAATAATAAGCACAGATTCGAGGTACGCTTGCAGTA
TTTTACAATTGTCGGCTAATGGTTTGGAATACGGTTACGGTGGCCGTGTC
CCTTTTATTGCAATGGGTAAGACTTCTAAAAAGTTTGCAATATCGTCTGC
TGTGAACGGAAACATCAATCATATAATACCGCCACCACCACCTACCGTTA
CTCTAAACAAAACGTACCACGTCGAGGTTCAACAACGATATGTCAGTAAT
GGTAATTACAGATATTTCATCATGATTGATGGAGAAGAAATTTACAGTGT
ACTAAACACTGACGCTCGGCAGTTTTACAATGTTCATGTGTATGCAGGAA
ACCCGTGGAATGACCCTTGCCCTGTGTACATCAGTAATTTGAaattaaca
aactttttgtAATAATTAATATTATCGTCCACCTCTAAGCAAAAGTTTGA
TGCATATTAGACAAAGCAAAGCTGAATATCATCAAGCGAGACTGGAAATT
CTTAGATATNAATATTAGACAAAGCAAAGCTGAATATCATCAAGCGAGAC
TGGAAATTCTTagatatccgatttttcttgtcgaagATTTGTTTACTATC
GTTCGTTAGAGGTATAGTAAACTactgaaaatatatattcaCAAAGTTTA
CAACCGCAATGGGTGGAATCGGAGAATAATAGTGGTGACAGAGATTGGAA
CAAACAAAGTAAACATCTCCGTAACTGTGAACTCCACCCCNN

Coding sequence (CDS) from alignment at sc0003622:1410..5051+

>TCONS_00042716 ID=TCONS_00042716|Name=TCONS_00042716|organism=Clytia hemisphaerica|type=CDS|length=2151bp|location=Sequence derived from alignment at sc0003622:1410..5051+ (Clytia hemisphaerica)
aaacaaaaaaatgaattctgttgcattttctttttcttcttcaatttcaa
tttcaattttcgaaaaacgcGTCTGCAAAACATGAGGATAATACCAATAC
TTCCTCTCATTGGATATTTCTATCTTCTTGCATGGATTTGTCAAACTGCA
TGTGACCGAacaaagACTGGCGAAGTACCGAAAAACAACCATGGCTTTAA
TCCAGCTGTTCTGATTGGTGAAAAAGAGAAAGAAGTAAAACGAAACATTC
TTATTGCGATCGTACCAATTCTTTCACCCGAATGGAGCGTTCAACTGGAT
ATGAGGTGGTACAACGAGACAATAATAAGCACAGATTCGAGGTACGCTTG
CAGTATTTTACAATTGTCGGCTAATGGTTTGGAATACGGTTACGGTGGCC
GTGTCCCTTTTATTGCAATGGGTAAGACTTCTAAAAAGTTTGCAATATCG
TCTGCTGTGAACGGAAACATCAATCATATAATACCGCCACCACCACCTAC
CGTTACTCTAAACAAAACGTACCACGTCGAGGTTCAACAACGATATGTCA
GTAATGGTAATTACAGATATTTCATCATGATTGATGGAGAAGAAATTTAC
AGTGTACTAAACACTGACGCTCGGCAGTTTTACAATGTTCATGTGTATGC
AGGAAACCCGTGGAATGACCCTTGCCCTGTGTACATCAGTAATTTGAaat
taacaaactttttgtAAaaacaaaaaaatgaattctgttgcattttcttt
ttcttcttcaatttcaatttcaattttcgaaaaacgcGTCTGCAAAACAT
GAGGATAATACCAATACTTCCTCTCATTGGATATTTCTATCTTCTTGCAT
GGATTTGTCAAACTGCATGTGACCGAacaaagACTGGCGAAGTACCGAAA
AACAACCATGGCTTTAATCCAGCTGTTCTGATTGGTGAAAAAGAGAAAGA
AGTAAAACGAAACATTCTTATTGCGATCGTACCAATTCTTTCACCCGAAT
GGAGCGTTCAACTGGATATGAGGTGGTACAACGAGACAATAATAAGCACA
GATTCGAGGTACGCTTGCAGTATTTTACAATTGTCGGCTAATGGTTTGGA
ATACGGTTACGGTGGCCGTGTCCCTTTTATTGCAATGGGTAAGACTTCTA
AAAAGTTTGCAATATCGTCTGCTGTGAACGGAAACATCAATCATATAATA
CCGCCACCACCACCTACCGTTACTCTAAACAAAACGTACCACGTCGAGGT
TCAACAACGATATGTCAGTAATGGTAATTACAGATATTTCATCATGATTG
ATGGAGAAGAAATTTACAGTGTACTAAACACTGACGCTCGGCAGTTTTAC
AATGTTCATGTGTATGCAGGAAACCCGTGGAATGACCCTTGCCCTGTGTA
CATCAGTAATTTGAaattaacaaactttttgtAAaaacaaaaaaatgaat
tctgttgcattttctttttcttcttcaatttcaatttcaattttcgaaaa
acgcGTCTGCAAAACATGAGGATAATACCAATACTTCCTCTCATTGGATA
TTTCTATCTTCTTGCATGGATTTGTCAAACTGCATGTGACCGAacaaagA
CTGGCGAAGTACCGAAAAACAACCATGGCTTTAATCCAGCTGTTCTGATT
GGTGAAAAAGAGAAAGAAGTAAAACGAAACATTCTTATTGCGATCGTACC
AATTCTTTCACCCGAATGGAGCGTTCAACTGGATATGAGGTGGTACAACG
AGACAATAATAAGCACAGATTCGAGGTACGCTTGCAGTATTTTACAATTG
TCGGCTAATGGTTTGGAATACGGTTACGGTGGCCGTGTCCCTTTTATTGC
AATGGGTAAGACTTCTAAAAAGTTTGCAATATCGTCTGCTGTGAACGGAA
ACATCAATCATATAATACCGCCACCACCACCTACCGTTACTCTAAACAAA
ACGTACCACGTCGAGGTTCAACAACGATATGTCAGTAATGGTAATTACAG
ATATTTCATCATGATTGATGGAGAAGAAATTTACAGTGTACTAAACACTG
ACGCTCGGCAGTTTTACAATGTTCATGTGTATGCAGGAAACCCGTGGAAT
GACCCTTGCCCTGTGTACATCAGTAATTTGAaattaacaaactttttgtA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026523XLOC_026523Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042716-proteinTCONS_00042716-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042716-exon-sc0003622-1491911889:1410..1574TCONS_00042716-exon-sc0003622-1491911889:1410..1574Clytia hemisphaericaexon
TCONS_00042716-exon-sc0003622-1510915933:1410..1574TCONS_00042716-exon-sc0003622-1510915933:1410..1574Clytia hemisphaericaexon
TCONS_00042716-exon-sc0003622-1575043694:1410..1574TCONS_00042716-exon-sc0003622-1575043694:1410..1574Clytia hemisphaericaexon
TCONS_00042716-exon-sc0003622-1491911889:1686..1746TCONS_00042716-exon-sc0003622-1491911889:1686..1746Clytia hemisphaericaexon
TCONS_00042716-exon-sc0003622-1510915933:1686..1746TCONS_00042716-exon-sc0003622-1510915933:1686..1746Clytia hemisphaericaexon
TCONS_00042716-exon-sc0003622-1575043694:1686..1746TCONS_00042716-exon-sc0003622-1575043694:1686..1746Clytia hemisphaericaexon
TCONS_00042716-exon-sc0003622-1491911889:4231..5051TCONS_00042716-exon-sc0003622-1491911889:4231..5051Clytia hemisphaericaexon
TCONS_00042716-exon-sc0003622-1510915933:4231..5051TCONS_00042716-exon-sc0003622-1510915933:4231..5051Clytia hemisphaericaexon
TCONS_00042716-exon-sc0003622-1575043694:4231..5051TCONS_00042716-exon-sc0003622-1575043694:4231..5051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003622supercontigsc0003622:1410..5051 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0423362	0	0.0958704	0	0	0	0	0	0	0.0883807	0	0	9.21281	10.5834	6.40016	3.9926	0	0.325751	14.8722	10.8526	0.340668	0.359383	0.242709	0.308921	0.181818	1.50098	0	0	0.281939	0.200094
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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