TCONS_00042709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042709
Unique NameTCONS_00042709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042709 ID=TCONS_00042709|Name=TCONS_00042709|organism=Clytia hemisphaerica|type=transcript|length=778bp
GTCGCACTTTTAGCATGTCATCTTATGAGAAGGATGTTGTATGTGGAGAG
GGAAAGTCAAATTGAAAAGaatTACCAAAGGAATTACCAAAACCATACGA
CAATGATTAACCTTGAACAACAGTCCACCACTTCCCTGATGAGGATTTAG
AATATCAACATCGAACTAGTTAATGAAGAAGATGAGCACAAAATTCAtTT
GACTTCCAAGAAAGATGACAAGTTAGGAGCATTTGCTGATATCTGTTTAT
GACGTTTATTAATCACTGGGTATAAAAGTTGTGTTCAAGCTGTTGTTTAT
ATTACCAAATATATGGCAACTTATTAGCTGGAAGTCCAAGAAAACAGCAA
CTACCAATTGGTCAACTGTGCTTAATCATCAACCGCTAGAATTAAATTAT
GTTAAAGGCTATTCCTAGCTACCATTAACTACAAATTGTGAAGTAAGTTT
TCAGGTTTGCCAGCGATGAAATGCTGAGGAGAGGTTTTCTTTGGAATTCA
AGTAGCGCAAGTACGACATCATATTCTAGGATCCAGAAATTACTTATAAT
TAAAGACAATTAAAGACATGAAACAAGAAGGATATCACAAAAATAGACCA
ACCCGgtacataatttttttcatattttgatgttttgataaGCTCAGGAA
ATATTTTCCATAAAGATTATTTCACACTCCAAAAAGACATTAGCTTAATT
TTCTTCATCAAACTGACCCTTCACCCGTTTTCGTCGGTAGACATAttagt
acacccctgtctcacagcacCAGTGGAA
Run BLAST on NCBI

transcript from alignment at sc0003617:2149..6632+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042709 ID=TCONS_00042709|Name=TCONS_00042709|organism=Clytia hemisphaerica|type=transcript|length=4484bp|location=Sequence derived from alignment at sc0003617:2149..6632+ (Clytia hemisphaerica)
GTCGCACTTTTAGCATGTCATCTTATGAGAAGGATGTTGTATGTGGAGAG
GGAAAGTCAAATTGAAAAGGTtatgattttctaattttacaAATTTGGAA
TTTAGTCAAATGAACTTTAAGTTTATTCCAATCACATTTTATATTCGTGA
CATGGCACATTTTACAGCACATATTCTTAGGCCAGCTGGTGagttttggc
tttttttgtttttctgtgttttgtttTAGGTTTTTGGCTCTTAGTGTCTC
TTTCTAAGTCAAGACAGGTGTAGCCTCTTCTCAAAGACCATATAGAaatt
ttttagccagtgggggtaaaaataattcGATAGGGAATTGTTACTTTTTT
ACGGTTTGGGATTTGCACTGTTTTCAAGTCAGTGGGGTTGAGAAAGTAGC
ACATATAGCCTGGAAATCCAAGCGTTGAACTTTTTCATTgtctagtgttt
tatattttACGTAATTTCAGAACTTTACAAATTGaggtaagaaaatttta
tttttctaaaatttaaagcttggatatccaggatAGCAcatatttttgaa
gatttacTTGTTCTCAACTTcggttgagctagaatctgataATGTCTGTT
TGTGCTGTGGGGCAGGCTGAAGTCTTCAAAAAAAGTCcgattttggctga
aattttgcacatttgTGTCGACttgattgaaattttgcacATTTGTTTCT
TGGTGAATATCTGGGtgtgttttgtttcatttttagaaaacattgTTTTA
GGGGCGTGGTCatgactttttttaaactttgaggcAGGCAGGAGACCTca
aaaaacaaagtttgaaagaaaagttatcttatatcaaaaattgtatttta
atgtTTACAATTCGGTCTACAAGTAATTTAaaaaatactgaagttgagtC
AGTATGCGGTTAGCACTATTAGCATTATTACattttgtctgtacacagac
ccagtatatacggctgattttaaaatacattTTACTTCGAAgtgataaac
gtgagatacacactctggtacagagtatatTACATTCAGcgggtcaaaat
ttgaagtataattttttaaCTGGGGATGACAGTTTGGCCAACTTTTCCAG
TGGGAGGGGATCCCACCGGGTctttgtgagaaggggtgttaggattttca
ttcaatttgtaaTTAGTATTTACCTAAAACTGGAATCAGGCTTTCTGTTG
TGATAACACATTTGTAGGGTTTCATAGTGTTGCTTGCAACATAACGGACA
CACATTTGACCCTCTAATATACAGCtttcagttaaaaaaatttaaagtta
gTTGGTGATTTTGTGAAAACTAAGTCTTTTTCGAGAAATTCGGtcaatct
ggtctgtaaaatacacattagtCATGTAATTAACTCAAAAATTTTCCTGA
ATAATATATTTGATATATTTACTTCACTCCTGCAAATTTTCATGACACCT
TATATATTTGTTGAAATATGACCGTTTTTTCAGGCCATAACCccttttaa
aaaattaattttgaatatcCAACTGTTTTTACTTGGGGCTTCATAGATCT
TGGTACTGACACTTACCATCATTTTTCTGACTCTTCTATACCCAACCTTT
CGagtggtacacgtttttttatataagaacaaactatataagaacataag
gcttcaatggccaaaatattaagaacaagttaaacaCATTTTATGGCTTT
GAGGACCCTataacacccaatttcttaataAATTAGACAAGAACACcctc
aaaatggtgaaaataagaacattttaagaacatttttatggcttgaaact
caaaaagttaagaacatccgaaggcttccaaAAAttggaatgttcttata
aaaaaagtgtataaatCACTATTACTCCATTTTTTATATACCCATTTGGC
CCTTATCTCATAGACTAATTAATCAATTCATAAAGATGAATTTCACAGGG
ATGATTTActttaatacacccctgtctcacagacccggtggaactttttc
ccacagtggggataaagatttctatcgaaatcacaacaggggatagaaat
tatattgttttaaGTTTAAATTATCCAGTTATTGAGATGGTTTGGGAGCG
TACTTTTAACATTGAATATCTaatgggaatgaaatcaaagtcaacaTCCC
ACCAGGAACGAAAATTGTAGGGTCTTTATCCAACCGGGGACGAATTTTTG
GCTTATTCCTTTGGCTCGTCGCCAAGGGTCGGTGATAGACGggtgtttta
atttttttaatttcttttgttttagaatTACCAAAGGAATTACCAAAACC
ATACGACAATGATTAACCTTGAACAACAGTCCACCACTTCCCTGATGAGG
ATTTAGAATATCAACATCGAACTAGTTAATGAAGAAGATGAGCACAAAAT
TCAGTAAATTATTACTTTCATCATTGAAATTGCACTATGATATCCCTTTT
TTCTTCGAGATAACCAAGGCAAGGCAAAAGGTTTTTGAGCAGTGTTCACG
CAAAACTTTAGTTATTTACTATGAAACACTAAAGAAAAGTTGTGGGTTCC
AAGGTACATAAAGACCAGTTAAAAATGTTGacacttttcctttttctttc
ttcagtTTGACTTCCAAGAAAGATGACAAGTTAGGAGCATTTGCTGATAT
CTGTTTATGACGTTTATTAATCACTGGGTATAAAAGTTGTGTTCAAGCTG
TTGTTTATATTACCAAATATATGGCAACTTATTAGGTGAGTTTAAATCAT
TACACATGGATAAGCGACTCATTGCATTATCCTAAATCTTAAGACATCTT
CAGAACTTTTCAATGCACTGTTGATATTGAAATGCTAAGACAAAAGGTTA
GTCAATAAAGCAAATGAACACCTTACCATGTCACAGAACCacaatcagcg
ccgaaatatatCGGCCATTCTGGGTATTATAACGTTTTGCTGAAGTTAAA
GGTTGcgcgagaattgcagtttcagtacttccactttgcttcattggatt
tttcgatttgggaggggttaagtggcttccaggctatattctcagcctaa
aatttaaattttttgttattaGCTGGAAGTCCAAGAAAACAGCAACTACC
AATTGGTCAACTGTGCTTAATCATCAACCGCTAGAATTAAATTATGTTAA
AGGCTATTCCTAGCTACCATTAACTACAAATTGTGAAGTAAGTTTTCAGG
TAACAGTCATTATCATTCTGCTCAAAGGCAACTCTAGACTAGAGtttact
tctgactgaactttgctttctgatgattttgatggcacAGAGTcggtgaa
gtagactagaggatttcgccttcttgaattttttccctctcgttttcaaa
aattatatgaaaacatcaaaacaataaaatgtttctaaaattccataaaa
gtttataaaattataataaaaacaagaaaatatctccaaaatttgaaaga
aattggtTCATTAGTCAtggttttgtgtttgtttttctacaaaaagggac
tggatctagtggtacggatttgctaccacctcaagcaaagccaaaaaatg
gaGCCCGTCAAATTACAcagggccacttatcagcgccatccagtctatca
gaAAGCTATAAGTGGTCCCTGGACTGTAAGACAACTCTCTCTGGGGGAGa
tgtactaggtttgcgaggggacgggtttatttgaaaatcgaccctttgag
agactaaaATTTTTGTTCGATCCTTTAAGAGACTATTTCTCCAATACTTA
GCTCAATATCAAGATTTGATGAACCTTTGAGGAAgtcgatttttgatatt
ttctaattttggaAAACTCAATTGCAAATTTATCGTTTTTTGTGCCCCTT
TAAGAGACTTTCGAGGGGTTAAAAAAGGGATCCTCATGGCCCCACATACC
CGACGCCCATTTCACCCATAGTATCACCTCTCTCCCGGGCTCTGGCTTCA
CACATCAGAAGTGGAGTCGTTTAGGAATTTAAGTCTGATCATTCAAGTTT
AATTTCATAGAATTTTTCACCCGTTAAAAGAGGAGAAATCGTCGAAAGAA
ATTCCATTTCATTTTATCATTAACTATTTCTTTTCCTTCCTAGTGTAGGT
TAAGTCACTGTGATTTCTGTTCAGAGTCTGGTTATTCTATATTGCCTTAT
GTCTTTTCAGGTTTGCCAGCGATGAAATGCTGAGGAGAGGTTTTCTTTGG
AATTCAAGTAGCGCAAGTACGACATCATATTCTAGGATCCAGAAATTACT
TATAATTAAAGACAATTAAAGACATGAAACAAGAAGGATATCACAAAAAT
AGACCAACCCGgtacataatttttttcatattttgatgttttgataaGCT
CAGGAAATATTTTCCATAAAGATTATTTCACACTCCAAAAAGACATTAGC
TTAATTTTCTTCATCAAACTGACCCTTCACCCGTTTTCGTCGGTAGACAT
AttagtacacccctgtctcacagcacCAGTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026517XLOC_026517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042709-exon-sc0003617-1491911889:2149..2217TCONS_00042709-exon-sc0003617-1491911889:2149..2217Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1510915933:2149..2217TCONS_00042709-exon-sc0003617-1510915933:2149..2217Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1575043694:2149..2217TCONS_00042709-exon-sc0003617-1575043694:2149..2217Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1491911889:4424..4551TCONS_00042709-exon-sc0003617-1491911889:4424..4551Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1510915933:4424..4551TCONS_00042709-exon-sc0003617-1510915933:4424..4551Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1575043694:4424..4551TCONS_00042709-exon-sc0003617-1575043694:4424..4551Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1491911889:4754..4883TCONS_00042709-exon-sc0003617-1491911889:4754..4883Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1510915933:4754..4883TCONS_00042709-exon-sc0003617-1510915933:4754..4883Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1575043694:4754..4883TCONS_00042709-exon-sc0003617-1575043694:4754..4883Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1491911889:5221..5347TCONS_00042709-exon-sc0003617-1491911889:5221..5347Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1510915933:5221..5347TCONS_00042709-exon-sc0003617-1510915933:5221..5347Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1575043694:5221..5347TCONS_00042709-exon-sc0003617-1575043694:5221..5347Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1491911889:6309..6632TCONS_00042709-exon-sc0003617-1491911889:6309..6632Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1510915933:6309..6632TCONS_00042709-exon-sc0003617-1510915933:6309..6632Clytia hemisphaericaexon
TCONS_00042709-exon-sc0003617-1575043694:6309..6632TCONS_00042709-exon-sc0003617-1575043694:6309..6632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003617supercontigsc0003617:2149..6632 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.79363	2.79606	2.7594	0.0120535	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.421992	0	1.44341	6.29278	0	0	1.25736	0	1.3442	5.59283
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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