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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042701 ID=TCONS_00042701|Name=TCONS_00042701|organism=Clytia hemisphaerica|type=transcript|length=944bp
AAAAAATTTCACACACgaatgaaaatggtaaaaacaATAAACAACCAGTG
GACAGTTGTGCTTGATATCAATTATAATCAAAGCTTccgaaaaaggaaaa
ttttcacaCCAAAATGTAGCACTCAAATAAAGACGGCTGAAAATTCAATT
CataaaataagcaaacaaagcttttggcaattaaaaaaattactcacCAA
AATGTCTCTCACTCAAAAGACAGCTGCCGAACCAATTCATCAAAAAACAC
GCTATGACAATTCCTTGTCAACACTAACTTGTGCACGAGGGCaacaaata
aaaactttaaaaattccGTAAATCACAAAAAATGCATGAAGAAACCAAAT
TTCAGCAACAACACTATCATTTAAAAAGAACTCTCCCGTACCACAGACGT
TGAAAATTTATATGAGAAATACTTTTAAAATCCTTCGACTAATTTAAAAG
AACGACTACTAAGCCAAGACCATCACAGCGAAAAAAAAAAGCGaagaaga
aaatgtaaaaaattttgaaaagaaagactcaataaaaacaaaagcaatAA
CCTTTACTTAGCCTATGGCCTTCAATACCGCTAAGACTCAAAGATTAATA
TCAAAACTGATGAAGGAAACGCGATACCTCAACTCCTGACGTTTTTTCCA
GTTTGATCTGCTTCCGTTCCAATGATCTTTATACGGATTCTGTATCAGCA
AATCGGTGCGCCATGTAAAAACCTGATGTCCCTAGGTTTCAGAGGGTTGT
ATTTTAGCTGGTCGGTCTTTAACAATAATAGTCGAATCTTGATTTATTAG
TTTACATGCTTCTTCCGTTCACTTTAGATAATTATGAAAAGTAACTACTC
AAAAACGTGAGTTCACAAGTTTAAATACATGGAAGACCACGAGATAATCA
CGTGATCttagaataataaaaatatacaaagaaagaaaagataa Run BLAST on NCBI protein sequence of TCONS_00042701-protein >TCONS_00042701-protein ID=TCONS_00042701-protein|Name=TCONS_00042701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
KKFHTRMKMVKTINNQWTVVLDINYNQSFRKRKIFTPKCSTQIKTAENSI
HKISKQSFWQLKKLLTKMSLTQKTAAEPIHQKTRYDNSLSTLTCARGQQI
KTLKIP Run BLAST on NCBI transcript from alignment at sc0003613:9380..10323 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042701 ID=TCONS_00042701|Name=TCONS_00042701|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at sc0003613:9380..10323 (Clytia hemisphaerica)
ttatcttttctttctttgtatatttttattattctaaGATCACGTGATTA
TCTCGTGGTCTTCCATGTATTTAAACTTGTGAACTCACGTTTTTGAGTAG
TTACTTTTCATAATTATCTAAAGTGAACGGAAGAAGCATGTAAACTAATA
AATCAAGATTCGACTATTATTGTTAAAGACCGACCAGCTAAAATACAACC
CTCTGAAACCTAGGGACATCAGGTTTTTACATGGCGCACCGATTTGCTGA
TACAGAATCCGTATAAAGATCATTGGAACGGAAGCAGATCAAACTGGAAA
AAACGTCAGGAGTTGAGGTATCGCGTTTCCTTCATCAGTTTTGATATTAA
TCTTTGAGTCTTAGCGGTATTGAAGGCCATAGGCTAAGTAAAGGTTattg
cttttgtttttattgagtctttcttttcaaaattttttacattttcttct
tCGCTTTTTTTTTTCGCTGTGATGGTCTTGGCTTAGTAGTCGTTCTTTTA
AATTAGTCGAAGGATTTTAAAAGTATTTCTCATATAAATTTTCAACGTCT
GTGGTACGGGAGAGTTCTTTTTAAATGATAGTGTTGTTGCTGAAATTTGG
TTTCTTCATGCATTTTTTGTGATTTACggaatttttaaagtttttatttg
ttGCCCTCGTGCACAAGTTAGTGTTGACAAGGAATTGTCATAGCGTGTTT
TTTGATGAATTGGTTCGGCAGCTGTCTTTTGAGTGAGAGACATTTTGgtg
agtaatttttttaattgccaaaagctttgtttgcttattttatGAATTGA
ATTTTCAGCCGTCTTTATTTGAGTGCTACATTTTGGtgtgaaaattttcc
tttttcggAAGCTTTGATTATAATTGATATCAAGCACAACTGTCCACTGG
TTGTTTATtgtttttaccattttcattcGTGTGTGAAATTTTTT Coding sequence (CDS) from alignment at sc0003613:9380..10323 >TCONS_00042701 ID=TCONS_00042701|Name=TCONS_00042701|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0003613:9380..10323 (Clytia hemisphaerica)
TTACggaatttttaaagtttttatttgttGCCCTCGTGCACAAGTTAGTG
TTGACAAGGAATTGTCATAGCGTGTTTTTTGATGAATTGGTTCGGCAGCT
GTCTTTTGAGTGAGAGACATTTTGgtgagtaatttttttaattgccaaaa
gctttgtttgcttattttatGAATTGAATTTTCAGCCGTCTTTATTTGAG
TGCTACATTTTGGtgtgaaaattttcctttttcggAAGCTTTGATTATAA
TTGATATCAAGCACAACTGTCCACTGGTTGTTTATtgtttttaccatttt
cattcGTGTGTGAAATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042701-exon-sc0003613-1491911889:9380..10323 | TCONS_00042701-exon-sc0003613-1491911889:9380..10323 | Clytia hemisphaerica | exon |
| TCONS_00042701-exon-sc0003613-1510915933:9380..10323 | TCONS_00042701-exon-sc0003613-1510915933:9380..10323 | Clytia hemisphaerica | exon |
| TCONS_00042701-exon-sc0003613-1575043694:9380..10323 | TCONS_00042701-exon-sc0003613-1575043694:9380..10323 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003613 | supercontig | sc0003613:9380..10323 . |
Blast
The following BLAST results are available for this feature:
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