TCONS_00042698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042698
Unique NameTCONS_00042698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042698 ID=TCONS_00042698|Name=TCONS_00042698|organism=Clytia hemisphaerica|type=transcript|length=1828bp
atttataaaagaaaatcagacgagaatgaaaatttaaaaactagGATTTT
TAATGTGACTGGAATCGAACTAGAACAAGGCACCAACAAAGCCGAAACAA
TTTGTAGAGCATGTTTTCGAAAAATTCCAGTATTGGAGAAAGCCAAAAAT
ACTCTACGTGAGTGGAACGCTGAACCAAACACCAACAATGATAATGAATT
ACATGGTTTTGATGACCAGGTaaataataatttcaatgattttagatcaa
ttttcaaaatattgtgaaggggggggggctggagGGTGTAAGCCTTTTCT
GATACTTACTCCCAGACATTTTGCATTTTCGATCCCGGACAGTAGTTTTA
CCCCTGGAAAACTAATTTGATCCCCGGACATCTTAATTTACCCCCAGACA
CCTCAAATTTACTCCTGGGATTGTAAATTTATCCCTGGAAATGGGTTGAT
TTCCTTTATTCCTTGTCACCCCCGGACACATAGCCAACCCCTTCCCCTGG
GACGTGGGTGGgagaatttttataaaaattatatgaaaagaaAGAACATG
CGTTTTTTGTCACGAGGAAAGAGTTTGAAGGTTCAAACGATTAATAGAGA
TCATGGAGAgggaaaagttgaaaatttaaaattaatcaTTGTTGTACAAT
TCAGATCAATCTAAAGTCCTTGACGTTTTCGTGCTTTGAAGAGGCTCGTA
AATTGGAGAACGACACACTCTTGACAGACACaagcaaagaaaatatttta
caattCAACGATAAGATCTTTTGTGATAAAGTCGAAGAAAAGTGTCCTAC
ATTAGCTGCATGCATCAAAGGAAGCCTCGGAATTCTGGTCGATGACAAAG
AGCAAACTAAACCATGCCGAACGTCTATTTATGGGTCAATTTTTAAAACA
CGATATTCAAAACGAGGTTGTATCGTTGCTTCACGTAACGACCAACTTTT
AGTTGCTGGAGGTATGAAGAAAAGGGGTTTCTCATGGACCAACAAACTTG
GCGTTAGCAACTCGTACAACACGGCATTGAAAAGGAACCGAGAAATGGGA
GACGACTATGATAGGGAGGCGAAACGGTGGAAGGCGTCGTGGGAATACGA
ATACAGTCAAATGAAATTGGCAGGATTAGATCCAGCGAATCCGGATGATG
TTAAAACATACAGACAAGAACATGGACGCCCAGACGATTATTCGATTGTC
AGTGACAACCTCGATTTTGAGCAACATGCAAGATTTCAAGACATTAAAAA
CCACAACAAATCAATTCATTGGTTACATTCGATGGCTGTAAAAAGCAGAA
CAACACCTAAAGAGGAGGTAATCCAAGAAGCTAATTTTGAACAACGTGAT
CTACTTCCTGACGCTCACACTTTCGAAACAATCTATGAAACAAACAAGAT
ATTGGTTGCAAGGATATTGGTCACGCACTTTCCggcttttaaaatgtttt
caaaaaacgtTTGTGGTCACATCAAGCATCCATACTCAGAGGAAATGGCA
AAGAAATCGGAGATCgTACCACTTGGCTTATTGTTCAAAGCAGAAAACAA
AACTGGAGAAATGGTCGACATTCTAAAAGAGCTTACAAATCGTTATGTTC
CGAAAACAAAACTCGAGGATGACACTGTTGAGgTGATTCGGTCTATCGTA
TTTGGAGGAGACCAGCTTACAGAAGAAAGGGCATCCAATGCTCAGAGGGG
TTTCCTTGATGGCtcaacaaaatatgaaaaacttcAGGGACTGCAACCAA
CCTTCGAAGGATGGCATACAAAAAGATTGCTATATAAACTTAAATTCAAA
CAATTTGGTAAAGAGTCATCACCTAAAN
Run BLAST on NCBI

transcript from alignment at sc0003611:6605..9398+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042698 ID=TCONS_00042698|Name=TCONS_00042698|organism=Clytia hemisphaerica|type=transcript|length=2794bp|location=Sequence derived from alignment at sc0003611:6605..9398+ (Clytia hemisphaerica)
atttataaaagaaaatcagacgagaatgaaaatttaaaaactagGATTTT
TAATGTGACTGGAATCGAACTAGAACAAGGCACCAACAAAGCCGAAACAA
TTTGTAGAGCATGTTTTCGAAAAATTCCAGTATTGGAGAAAGCCAAAAAT
ACTCTACGTGAGTGGAACGCTGAACCAAACACCAACAATGATAATGAATT
ACATGGTTTTGATGACCAGGTaaataataatttcaatgattttagatcaa
ttttcaaaatattgtgaaggggggggggctggagGGTGTAAGCCTTTTCT
GATACTTACTCCCAGACATTTTGCATTTTCGATCCCGGACAGTAGTTTTA
CCCCTGGAAAACTAATTTGATCCCCGGACATCTTAATTTACCCCCAGACA
CCTCAAATTTACTCCTGGGATTGTAAATTTATCCCTGGAAATGGGTTGAT
TTCCTTTATTCCTTGTCACCCCCGGACACATAGCCAACCCCTTCCCCTGG
GACGTGGGTGGgagaatttttataaaaattatatgaaaagaaAGAACATG
CGTTTTTTGTCACGAGGAAAGAGTTTGAAGGTTCAAACGATTAATAGAGA
TCATGGAGAgggaaaagttgaaaatttaaaattaatcaTTGTTGTACAAT
TCAGATCAATCTAAAGTCCTTGACGTTTTCGTGCTTTGAAGAGGCTCGTA
AATTGGAGAACGACACACTCTTGACAGACACaagcaaagaaaatatttta
caattCAACGATAAGATCTTTTGTGATAAAGTCGAAGAAAAGTGTCCTAC
ATTAGCTGCATGCATCAAAGGAAGCCTCGGAATTCTGGTCGATGACAAAG
AGCAAACTAAACCATGCCGAACGTCTATTTATGGGTCAATTTTTAAAACA
CGGTAACTTTATAATTTGGCAATTTAACGTTCCcgtgttatttttgattt
tttctaaaaaatttagttGCCTAATTACTGTGGTTGTCAGGGTATTAGGA
GGCTCCTATTAGGTTCATCGCTATATAGTACTTTTCTTAATTGACTTTCT
CTCCCAAATCGGTTATTTATTCAAAGCTTCGAATATTAGGACCTTCTAAA
TATCACTTCTGAAAGCAAAAGAAGAGAGCTGAGGGACCTTTACTCTTTTT
AGATATTCAAAACGAGGTTGTATCGTTGCTTCACGTAACGACCAACTTTT
AGTTGCTGGAGGTATGAAGAAAAGGGGTTTCTCATGGACCAACAAACTTG
GCGTTAGCAACTCGTACAACACGGCATTGAAAAGGAACCGAGAAATGGGA
GACGACTATGATAGGGAGGCGAAACGGTGGAAGGCGTCGTGGGAATACGA
ATACAGTCAAATGAAATTGGCAGGATTAGATCCAGCGAATCCGGATGATG
TTAAAACATACAGACAAGAACATGGACGCCCAGACGATTATTCGGTATTT
TCATCTgtcgaaaaatttatttttagagaAATAAAATCTAGGACtaacga
aaattgattttaatgaaaCATTTTATAGAATGTTGTGTCTTTGATGGCAT
TACAgataaaatttctctttttattatACAATAACAAAAATCTTTGGTAA
ATGAAAATCATACTAcatctaaaaatataaacaaaatattaCTATTTAGA
TTGTCAGTGACAACCTCGATTTTGAGCAACATGCAAGATTTCAAGACATT
AAAAACCACAACAAATCAATTCATTGGTTACATTCGATGGCTGTAAAAAG
CAGAACAACACCTAAAGGTGATTTTGTTGGAGAAATTTACAAAAAGGCAC
TAAGAGGGGGGGACCTTCTAGTTTAGTAAATGAAACTTTCCCATTGAATT
ATCAACTTCATTTGTTTCTTTCATTCAGAGGAGGTAATCCAAGAAGCTAA
TTTTGAACAACGTGATCTACTTCCTGACGCTCACACTTTCGAAACAATCT
ATGAAACAAACAAGATATTGGTTGCAAGGATATTGGTCACGCACTTTCCg
gcttttaaaatgttttcaaaaaacgtTTGTGGTCACATCAAGCATCCATA
CTCAGAGGAAATGGCAAAGAAATCGGAGATCGTAAGTCGacgaaaagaaa
atgttttaaaaatttctcaaaaattctaAAGCATACTGAATTGCAAGGTA
TTTCTATttcataaaataaatatttctaaaaaataataatctgtcatttt
attttcttaaaggTACCACTTGGCTTATTGTTCAAAGCAGAAAACAAAAC
TGGAGAAATGGTCGACATTCTAAAAGAGCTTACAAATCGTTATGTTCCGA
AAACAAAACTCGAGGATGACACTGTTGAGGTATTAAAATCACTTTGTGAG
ATTATCAATGATATAAGATAAAAATATACGATATGCTAATCATACAGTAa
gaataagaacatattaaaaattgatactttttttcatatttctaggTGAT
TCGGTCTATCGTATTTGGAGGAGACCAGCTTACAGAAGAAAGGGCATCCA
ATGCTCAGAGGGGTTTCCTTGATGGCtcaacaaaatatgaaaaacttcAG
GGACTGCAACCAACCTTCGAAGGATGGCATACAAAAAGATTGCTATATAA
AGTAAGAACTCTGAGAGTTTCTTTCCTTTGCACTAGAAATTTAGTATGCa
acttttcaatttcataaaatgaaTTGAAAGATGCGGATTAAGTATAAACA
TTAAAACATATATATTGAGATATTGAATCTAAATTTACAATATAATCATT
TTAGCTTAAATTCAAACAATTTGGTAAAGAGTCATCACCTAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026508XLOC_026508Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042698-exon-sc0003611-1491911889:6605..7506TCONS_00042698-exon-sc0003611-1491911889:6605..7506Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1510915933:6605..7506TCONS_00042698-exon-sc0003611-1510915933:6605..7506Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1575043694:6605..7506TCONS_00042698-exon-sc0003611-1575043694:6605..7506Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1491911889:7757..8048TCONS_00042698-exon-sc0003611-1491911889:7757..8048Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1510915933:7757..8048TCONS_00042698-exon-sc0003611-1510915933:7757..8048Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1575043694:7757..8048TCONS_00042698-exon-sc0003611-1575043694:7757..8048Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1491911889:8254..8371TCONS_00042698-exon-sc0003611-1491911889:8254..8371Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1510915933:8254..8371TCONS_00042698-exon-sc0003611-1510915933:8254..8371Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1575043694:8254..8371TCONS_00042698-exon-sc0003611-1575043694:8254..8371Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1491911889:8483..8685TCONS_00042698-exon-sc0003611-1491911889:8483..8685Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1510915933:8483..8685TCONS_00042698-exon-sc0003611-1510915933:8483..8685Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1575043694:8483..8685TCONS_00042698-exon-sc0003611-1575043694:8483..8685Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1491911889:8817..8933TCONS_00042698-exon-sc0003611-1491911889:8817..8933Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1510915933:8817..8933TCONS_00042698-exon-sc0003611-1510915933:8817..8933Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1575043694:8817..8933TCONS_00042698-exon-sc0003611-1575043694:8817..8933Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1491911889:9050..9205TCONS_00042698-exon-sc0003611-1491911889:9050..9205Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1510915933:9050..9205TCONS_00042698-exon-sc0003611-1510915933:9050..9205Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1575043694:9050..9205TCONS_00042698-exon-sc0003611-1575043694:9050..9205Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1491911889:9359..9398TCONS_00042698-exon-sc0003611-1491911889:9359..9398Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1510915933:9359..9398TCONS_00042698-exon-sc0003611-1510915933:9359..9398Clytia hemisphaericaexon
TCONS_00042698-exon-sc0003611-1575043694:9359..9398TCONS_00042698-exon-sc0003611-1575043694:9359..9398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003611supercontigsc0003611:6605..9398 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.969697	1.05132	0.906654	0.62806	1.01165	1.66738	1.82437	1.85581	1.6544	1.45454	2.06682	0.601347	1.01708	1.56836	1.18961	0.829839	1.30014	1.78468	0.946786	1.05267	1.30431	1.50441	0.472143	0.460787	1.98045	0.788446	1.8319	1.2097	0.44555	0.184738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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