TCONS_00042696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042696
Unique NameTCONS_00042696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042696 ID=TCONS_00042696|Name=TCONS_00042696|organism=Clytia hemisphaerica|type=transcript|length=626bp
TCTTTATGATCTTCTTCTTTATCCCTCAAAAGTTGTTCCATGTCTGCAAA
TTTATTCAATAAAGTCTCTTTTTGGACACGAAATTCTTCCAAAGAAGTTA
GCTTTCCCTGTAAAACCATGTTTTCAGATGTTAACTGGTCTTTAACTTCT
TGCATTTCAGTTTTAACAGTTGTAATTTCAACTTCATATTTATCCTTTTG
AATATCTTTGGCTTGTTGAACACCAATTATTTTCTCTTGCAAATCAGCAA
TTTCATCTGATCTTTGTTCCAACTGTTTTTTGAGAAAGGAAACAATTTCT
TTCTTATCTGATGCCTGCTGGTCAAATTGTTTTTCCAAGTCCTTATTTCG
TAAATCTAACTCATCACATTTAGTTTGATATCGAGAGATTTTCAATTCCA
AGTCTCTAATTTGAACTAAATAGAACTCCCTTGATAATTCATCAAATATT
TTATCAACCGTTACTGAATTGGACTTGGCGCTTTTGGTAGCACTTTTATT
TTTTCCACTTTTCTTTcctccttttttcttttttgccatgatttatctaa
aaaataaattcttttacTCAAAAACACTAgcataaaaataattacctaAC
GAggactaccttattggaactaattt
Run BLAST on NCBI

protein sequence of TCONS_00042696-protein

>TCONS_00042696-protein ID=TCONS_00042696-protein|Name=TCONS_00042696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MAKKKKGGKKSGKNKSATKSAKSNSVTVDKIFDELSREFYLVQIRDLELK
ISRYQTKCDELDLRNKDLEKQFDQQASDKKEIVSFLKKQLEQRSDEIADL
QEKIIGVQQAKDIQKDKYEVEITTVKTEMQEVKDQLTSENMVLQGKLTSL
EEFRVQKETLLNKFADMEQLLRDKEEDHK
Run BLAST on NCBI

transcript from alignment at sc0003610:10019..10644

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042696 ID=TCONS_00042696|Name=TCONS_00042696|organism=Clytia hemisphaerica|type=transcript|length=626bp|location=Sequence derived from alignment at sc0003610:10019..10644 (Clytia hemisphaerica)
aaattagttccaataaggtagtccTCGTtaggtaattatttttatgcTAG
TGTTTTTGAgtaaaagaatttattttttagataaatcatggcaaaaaaga
aaaaaggaggAAAGAAAAGTGGAAAAAATAAAAGTGCTACCAAAAGCGCC
AAGTCCAATTCAGTAACGGTTGATAAAATATTTGATGAATTATCAAGGGA
GTTCTATTTAGTTCAAATTAGAGACTTGGAATTGAAAATCTCTCGATATC
AAACTAAATGTGATGAGTTAGATTTACGAAATAAGGACTTGGAAAAACAA
TTTGACCAGCAGGCATCAGATAAGAAAGAAATTGTTTCCTTTCTCAAAAA
ACAGTTGGAACAAAGATCAGATGAAATTGCTGATTTGCAAGAGAAAATAA
TTGGTGTTCAACAAGCCAAAGATATTCAAAAGGATAAATATGAAGTTGAA
ATTACAACTGTTAAAACTGAAATGCAAGAAGTTAAAGACCAGTTAACATC
TGAAAACATGGTTTTACAGGGAAAGCTAACTTCTTTGGAAGAATTTCGTG
TCCAAAAAGAGACTTTATTGAATAAATTTGCAGACATGGAACAACTTTTG
AGGGATAAAGAAGAAGATCATAAAGA

Coding sequence (CDS) from alignment at sc0003610:10019..10644

>TCONS_00042696 ID=TCONS_00042696|Name=TCONS_00042696|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0003610:10019..10644 (Clytia hemisphaerica)
atggcaaaaaagaaaaaaggaggAAAGAAAAGTGGAAAAAATAAAAGTGC
TACCAAAAGCGCCAAGTCCAATTCAGTAACGGTTGATAAAATATTTGATG
AATTATCAAGGGAGTTCTATTTAGTTCAAATTAGAGACTTGGAATTGAAA
ATCTCTCGATATCAAACTAAATGTGATGAGTTAGATTTACGAAATAAGGA
CTTGGAAAAACAATTTGACCAGCAGGCATCAGATAAGAAAGAAATTGTTT
CCTTTCTCAAAAAACAGTTGGAACAAAGATCAGATGAAATTGCTGATTTG
CAAGAGAAAATAATTGGTGTTCAACAAGCCAAAGATATTCAAAAGGATAA
ATATGAAGTTGAAATTACAACTGTTAAAACTGAAATGCAAGAAGTTAAAG
ACCAGTTAACATCTGAAAACATGGTTTTACAGGGAAAGCTAACTTCTTTG
GAAGAATTTCGTGTCCAAAAAGAGACTTTATTGAATAAATTTGCAGACAT
GGAACAACTTTTGAGGGATAAAGAAGAAGATCATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026507XLOC_026507Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042696-proteinTCONS_00042696-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042696-exon-sc0003610-1491911889:10019..10644TCONS_00042696-exon-sc0003610-1491911889:10019..10644Clytia hemisphaericaexon
TCONS_00042696-exon-sc0003610-1510915933:10019..10644TCONS_00042696-exon-sc0003610-1510915933:10019..10644Clytia hemisphaericaexon
TCONS_00042696-exon-sc0003610-1575043694:10019..10644TCONS_00042696-exon-sc0003610-1575043694:10019..10644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003610supercontigsc0003610:10019..10644 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.7163	9.38505	5.88328	5.87012	70.6499	47.6513	28.9019	27.2489	11.3046	12.9624	11.9526	11.5048	2.37352	1.54019	1.08107	2.3698	0.501794	1.78053	2.36133	2.49684	5.58617	4.59541	9.10874	8.17497	39.2219	42.1714	12.9189	11.8702	2.50229	4.25644
Blast
[Close]
BLAST of TCONS_00042696 vs. Swiss-Prot (Human)
Match: CF157 (Cilia- and flagella-associated protein 157 OS=Homo sapiens GN=CFAP157 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.362e-38
Identity = 72/154 (46.75%), Postives = 112/154 (72.73%), Query Frame = -1 
Query:    3 VTVDKIFDELSREFYLVQIRDLELKISRYQTKCDELDLRNKDLEKQFDQQASDKKEIVSFLKKQLEQRSDEIADLQEKIIGVQQAKDIQKDKYEVEITTVKTEMQEVKDQLTSENMVLQGKLTSLEEFRVQKETLLNKFADMEQLLRDKEEDHK 464
            V V+    +  +EFY +QIRDLE +++RYQ K DEL ++ K   ++F+Q A++KKEIV+FLK+ L Q+ DEI DL E++  +Q AK+++KD +E ++  V+ E QE KDQLT+EN++L GKL +LEEFR+QKE + +KF  +E+ +R +E + +
Sbjct:   27 VAVEPPLAKEMKEFYHIQIRDLEDRLARYQRKWDELAVQEKMFRQEFEQLANNKKEIVAFLKRTLNQQVDEITDLNEQLQNLQLAKEMEKDAFEAQLAQVRHEFQETKDQLTTENIILGGKLAALEEFRLQKEEVTDKFTLLEEQVRKQENEFR 180
The following BLAST results are available for this feature:
BLAST of TCONS_00042696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CF1572.362e-3846.75Cilia- and flagella-associated protein 157 OS=Homo... [more]
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