TCONS_00042693 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042693
Unique NameTCONS_00042693
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042693 ID=TCONS_00042693|Name=TCONS_00042693|organism=Clytia hemisphaerica|type=transcript|length=1058bp
ctttttttggCTATGTTTGTCAAACCTGATAAAAATGATACACGCAGTTA
TAAAATGAATAATTCCCAAGGGAGTTAAAAAATAAGTAGGATATTTATAA
CATAAGAAACTTGTCCCGAATGCAAAGAGCCGCATCATGGAGCCAAATGT
TGAACGAAGGCCGTCAATTAAACAAGAATTCTCCGATGACACAGTGTTGA
AGAGAAGGACCTTACCAGATGATTGTATGTGAAAATACATCCAAGCCTTG
ATGAACAGGTGAGACAGTAAATAAATGGTTTGCATCTTGTAAGAAGAAAT
GTCCAAAAAGTAAGGCAGTAGTAAATTGGCAAAACTAAATATTGTCAAAG
TTAATGCTGTTGCGtaacaaaaataacttttacgAAGTCCTTGGAAAACT
TTGTATTTGATGAGTACTGTAATGATGATGTAGATGAGGGTTGAAGCAAT
GATATTTAGTCGTGATAAAGAGGCAACATTCCAATGGANCACTGTTATGA
TGATGTAGATGAGGGTTGAAGCAATGATATTTAGTCGTGATAAAGAGGCA
ACATTCCAATGGAATTGGGATAACGCGTACATAACTATCAGAGACATCAT
AGTATTGATTGCGTATCTCATTATACCATAAGATAGACATAATGTTACGA
TATCTACATTGACCAGTTGTTTCCAATGCATTACCAAGCCAATTTTTGAT
CCAGTGCTAATGGCGTCTTCTGATTTTATGGTGTCTGATAGATCATGTTG
TTTTCCAGTACTTTCAACTCTGGGGTCGTCGATATGGTGAGAAAACTTTG
CCTTGATTTCTTCTAATTCTTTCGATGTATTACTCAGACAAAACCACATT
GCAATGTACAGGAACATCGATATGATGGTAATGAAGATATGAACTGCATT
GTATTTATCGATTTTCCAGGAGCCAATTTGGAAATCAATTAGCGTGAAAA
GGATTGGTGCACCAGGGCCAATATTAAATCCAATGGAATAACAGATTTCA
TTCCAACCCAAAACATTGATGAGATCTTTGTCATTGTAACATCGCCTAAA
CTCACCTG
Run BLAST on NCBI

transcript from alignment at sc0003610:3267..5193+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042693 ID=TCONS_00042693|Name=TCONS_00042693|organism=Clytia hemisphaerica|type=transcript|length=1927bp|location=Sequence derived from alignment at sc0003610:3267..5193+ (Clytia hemisphaerica)
ctttttttggCTATGTTTGTCAAACCTGATAAAAATGATACACGCAGTTA
TAAAATGAATAATTCCCAAGGGAGTTAAAAAATAAGTAGGATATTTATAA
CATAAGAAACTTGTCCCGAATGCAAAGAGCCGCATCATGGAGCCAAATGT
TGAACGAAGGCCGTCAATTAAACAAGAATTCTCCGATGACACAGTGTTGA
AGAGAAGGACCTTACCAGATGATTGTATGTGAAAATACATCCAAGCCTTG
ATGAACAGGTGAGACAGTAAATAAATGGTTTGCATCTTGTAAGAAGAAAT
GTCCAAAAAGTAAGGCAGTAGTAAATTGGCAAAACTAAATATTGTCAAAG
TTAATGCTGTTGCGtaacaaaaataacttttacgAAGTCCTTGGAAAACT
TTGTATTTGATGAGTACTGTAATGATGATGTAGATGAGGGTTGAAGCAAT
GATATTTAGTCGTGATAAAGAGGCAACATTCCAATGGANCACTGTTATGA
TGATGTAGATGAGGGTTGAAGCAATGATATTTAGTCGTGATAAAGAGGCA
ACATTCCAATGGAATTGGGATAACGCGTACATAACTATCAGAGACATCAT
GGTATTGATTGCGTATCTCATTATACCATAAGATAGACATAATGTTACGA
TATCTACATTGACCAGTTGTTTCCAATGCATTACCAAGCCACTTTTTGTT
CCAGTGCTAATGACGTCTTCTGATTTTGTGGTGTCTGCTAGATCATGTTG
TTTTCCAGTACTTTCAACTCTGGGGTCGTCGATATGGTGAGAAAACTTTG
CCTTGATTTCTTCTAATTCTTTCGATGTATTACTCAGACAAAACCACATT
GCAATGTACAGGAACATCGATATGATGGTAATGAAAATATGAACTGCATT
GTATTTATCGATTTTCCAGGAGCCAATTTGGAAATCAATTAGCGTGAAAA
GGATTGGTGCACCAGGGCCAATATTAAATCCAATGGAATAACAGATTTCA
TTCCAACCCAAAACATTGATGAGATCTTTGTCATTGTAACATCGCCTAAA
CTCACCTGGAGGAAATAAATGTCTCATTTTTACTTTCAGTCCTTTCAGTG
CAAAAGAAGACGAATGATTTAGCAAAACGATTTCATTTGTTGAAGTTTCG
GGCAAATTCTATTTTCAAGATCCAAACACCTCTTTATCACAGACCAAAGA
AGGGGTGCAGGGTATGTGCGGGGGGGGGGNTTGTAAGAAGAAATGTCCAA
AAAGTAAGGCAGTAGTAAATTGGCAAAACTAAATATTGTCAAAGTTAATG
CTGTTGCGtaacaaaaataacttttacgAAGTCCTTGGAAAACTTTGTAT
TTGATGAGTACTGTAATGATGATGTAGATGAGGGTTGAAGCAATGATATT
TAGTCGTGATAAAGAGGCAACATTCCAATGGAATTGGGATAACGCGTACA
TAGCTATTAAAGACATCATAGTATTGATTGCGTATCTCATTATACCATAA
GATAGACATAATGTTACGATATCTACATTGACCAGTTGTTTCCAATGCAT
TACCAAGCCAATTTTTGATCCAGTGCTAATGGCGTCTTCTGATTTTATGG
TGTCTGATAGATCATGTTGTTTTCCAGTACTTTCAACTCTGGGGTCGTCG
ATATGGTGAGAAAACTTTGCCTTGATTTCTTCTAATTCTTTCGATGTATT
ACTCAGACAAAACCACATTGCAATGTACAGGAACATCGATATGATGGTAA
TGAAGATATGAACTGCATTGTATTTATCGATTTTCCAGGAGCCAATTTGG
AAATCAATTAGCGTGAAAAGGATTGGTGCACCAGGGCCAATATTAAATCC
AATGGAATAACAGATTTCATTCCAACCCAAAACATTGATGAGATCTTTGT
CATTGTAACATCGCCTAAACTCACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026505XLOC_026505Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042693-exon-sc0003610-1491911889:3267..3861TCONS_00042693-exon-sc0003610-1491911889:3267..3861Clytia hemisphaericaexon
TCONS_00042693-exon-sc0003610-1510915933:3267..3861TCONS_00042693-exon-sc0003610-1510915933:3267..3861Clytia hemisphaericaexon
TCONS_00042693-exon-sc0003610-1575043694:3267..3861TCONS_00042693-exon-sc0003610-1575043694:3267..3861Clytia hemisphaericaexon
TCONS_00042693-exon-sc0003610-1491911889:4731..5193TCONS_00042693-exon-sc0003610-1491911889:4731..5193Clytia hemisphaericaexon
TCONS_00042693-exon-sc0003610-1510915933:4731..5193TCONS_00042693-exon-sc0003610-1510915933:4731..5193Clytia hemisphaericaexon
TCONS_00042693-exon-sc0003610-1575043694:4731..5193TCONS_00042693-exon-sc0003610-1575043694:4731..5193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003610supercontigsc0003610:3267..5193 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.541	3.95219	0.177976	0.232421	0	0	0	0	0	0	0	0.0278304	0	0	0	0	0.195217	0.493426	0	0	1.68588	1.89014	3.52059	3.75329	0.431768	0.509463	6.5284	10.7033	0.329993	0.805853
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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