TCONS_00042691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042691
Unique NameTCONS_00042691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042691 ID=TCONS_00042691|Name=TCONS_00042691|organism=Clytia hemisphaerica|type=transcript|length=812bp
TGGTCGAACGGTCAACggttttcaagatggcggcaaatttttagtttttc
attttaaattttaaattgttGATCATAAGAAGATTTCGGTGGAGGATTTT
CACCAGAGAGGAGAACAGGAGAATACGGTGGAGGATTTTCACCAGAGAGG
AGAATACGGTGGAGGATATTGACAAGAGGGGAGATTTCGGTGGAGGATTT
TCTACAAAGTAAAGAACCATCAAACCCATCCTTGAACCAACACTCAACAA
ACAAATCctgtttttcttgtttcaaaaattttaataggGTCAAGAGTGCG
TGGCCTACAAATTACGTAGTTTTTTAGAACCTATGAAATTTACTGAACAG
ACAAAAGAAAAGGCAAGAATATATAGATAAAAGATGGGGGAGAGATCAAC
AACAAAAGCAACAAAAGTCTATGCGGTGAAAACAGGCAGAAAGAAAGGGC
TGTTTGAGACATGGGAAGAGTGCTCAGAACAAGTAAATGGATATAAAGGG
GCAGAATATAAAGGTTTTAAGACTAAAGAAGaggcagaaaaatattttca
agggaTAACCCCTTTCGAGAAAGAAAACAGAGATACACCGAAAGGAGAGG
AAGTAAAACCTAGTGCTTTAATAAATCCTGAACTAGAAGGAAAAAGTACT
CAGGGAGAAGAAGATGATCTGGAAGAGGAAGAATTTTATGATATCCCAGT
AGGAGAGAGTGAGGAAGATTATTTAAGCCAACCCGTGGTGACCCTAAATA
AAGAGTCACACTCGAAACCAAACAGCAATGAGATGGAAGAAAAAGACAAG
GATGAGGCggcc
Run BLAST on NCBI

protein sequence of TCONS_00042691-protein

>TCONS_00042691-protein ID=TCONS_00042691-protein|Name=TCONS_00042691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MGERSTTKATKVYAVKTGRKKGLFETWEECSEQVNGYKGAEYKGFKTKEE
AEKYFQGITPFEKENRDTPKGEEVKPSALINPELEGKSTQGEEDDLEEEE
FYDIPVGESEEDYLSQPVVTLNKESHSKPNSNEMEEKDKDEAA
Run BLAST on NCBI

transcript from alignment at sc0003609:9837..10648

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042691 ID=TCONS_00042691|Name=TCONS_00042691|organism=Clytia hemisphaerica|type=transcript|length=812bp|location=Sequence derived from alignment at sc0003609:9837..10648 (Clytia hemisphaerica)
ggccGCCTCATCCTTGTCTTTTTCTTCCATCTCATTGCTGTTTGGTTTCG
AGTGTGACTCTTTATTTAGGGTCACCACGGGTTGGCTTAAATAATCTTCC
TCACTCTCTCCTACTGGGATATCATAAAATTCTTCCTCTTCCAGATCATC
TTCTTCTCCCTGAGTACTTTTTCCTTCTAGTTCAGGATTTATTAAAGCAC
TAGGTTTTACTTCCTCTCCTTTCGGTGTATCTCTGTTTTCTTTCTCGAAA
GGGGTTAtcccttgaaaatatttttctgcctCTTCTTTAGTCTTAAAACC
TTTATATTCTGCCCCTTTATATCCATTTACTTGTTCTGAGCACTCTTCCC
ATGTCTCAAACAGCCCTTTCTTTCTGCCTGTTTTCACCGCATAGACTTTT
GTTGCTTTTGTTGTTGATCTCTCCCCCATCTTTTATCTATATATTCTTGC
CTTTTCTTTTGTCTGTTCAGTAAATTTCATAGGTTCTAAAAAACTACGTA
ATTTGTAGGCCACGCACTCTTGACcctattaaaatttttgaaacaagaaa
aacagGATTTGTTTGTTGAGTGTTGGTTCAAGGATGGGTTTGATGGTTCT
TTACTTTGTAGAAAATCCTCCACCGAAATCTCCCCTCTTGTCAATATCCT
CCACCGTATTCTCCTCTCTGGTGAAAATCCTCCACCGTATTCTCCTGTTC
TCCTCTCTGGTGAAAATCCTCCACCGAAATCTTCTTATGATCaacaattt
aaaatttaaaatgaaaaactaaaaatttgccgccatcttgaaaaccGTTG
ACCGTTCGACCA

Coding sequence (CDS) from alignment at sc0003609:9837..10648

>TCONS_00042691 ID=TCONS_00042691|Name=TCONS_00042691|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0003609:9837..10648 (Clytia hemisphaerica)
ggccGCCTCATCCTTGTCTTTTTCTTCCATCTCATTGCTGTTTGGTTTCG
AGTGTGACTCTTTATTTAGGGTCACCACGGGTTGGCTTAAATAATCTTCC
TCACTCTCTCCTACTGGGATATCATAAAATTCTTCCTCTTCCAGATCATC
TTCTTCTCCCTGAGTACTTTTTCCTTCTAGTTCAGGATTTATTAAAGCAC
TAGGTTTTACTTCCTCTCCTTTCGGTGTATCTCTGTTTTCTTTCTCGAAA
GGGGTTAtcccttgaaaatatttttctgcctCTTCTTTAGTCTTAAAACC
TTTATATTCTGCCCCTTTATATCCATTTACTTGTTCTGAGCACTCTTCCC
ATGTCTCAAACAGCCCTTTCTTTCTGCCTGTTTTCACCGCATAGACTTTT
GTTGCTTTTGTTGTTGATCTCTCCCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026504XLOC_026504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042691-exon-sc0003609-1491911889:9837..10648TCONS_00042691-exon-sc0003609-1491911889:9837..10648Clytia hemisphaericaexon
TCONS_00042691-exon-sc0003609-1510915933:9837..10648TCONS_00042691-exon-sc0003609-1510915933:9837..10648Clytia hemisphaericaexon
TCONS_00042691-exon-sc0003609-1575043694:9837..10648TCONS_00042691-exon-sc0003609-1575043694:9837..10648Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042691-proteinTCONS_00042691-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003609supercontigsc0003609:9837..10648 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.235342	0.229495	0.0666164	0.130348	0.0793428	0.250791	0	0.283261	0	0.368473	0	0.0783681	0.195648	0.0406364	0	0.143411	0.0441675	0.0905405	0	0	0.0568854	0.16648	0	0	0.379014	0.225507	0.080675	0.0860985	0.0653027	0.0665331
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011320RNase_H1_N
IPR009027Ribosomal_L9/RNase_H1_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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