TCONS_00042688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042688
Unique NameTCONS_00042688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042688 ID=TCONS_00042688|Name=TCONS_00042688|organism=Clytia hemisphaerica|type=transcript|length=545bp
aagaaattcgcgaaattcgaagaaattttCCAACAAAATCCGAACATCGT
CTCGTTGCGTTATGGTCATGCTAATTATCTTGGTTATGAAGATCGGACAC
TTCTCATGTGGGCTGTTCTTGAAGACCGTTTCGACGTTTTCGTTCACTTG
ATGAATTATCCTCAAGATTTTTCACTCGTGGACACTGGAGGTTACAACAT
TCTTCATCATGTTGGTTTTTATGGAAAAGTTCGTCATTTGGAAAAGTTTG
AtcaacaaacaatcaaaatgttgATCGATGGAAGAGACGTACGGAACGAA
ACACCATTGCATGTTGCAGCACGTCACAGCaaacatgacgtcatcagatg
gtTGTTGGCCAAAGGAGCGGATCATGAATTGGAAAATGATCGTGGTGAAC
GCCCTGATGAACAACGGTTTGGTTATTGTGATGGtgttacaaaaaaaatc
attcgaTCGTTTCGTTCGTCTTGattgtttgattgattgtttCCATTGTC
TGTTTCATCGTTTCCAATGACGCCATCGGTTCCAAACATTTCCAC
Run BLAST on NCBI

protein sequence of TCONS_00042688-protein

>TCONS_00042688-protein ID=TCONS_00042688-protein|Name=TCONS_00042688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
KKFAKFEEIFQQNPNIVSLRYGHANYLGYEDRTLLMWAVLEDRFDVFVHL
MNYPQDFSLVDTGGYNILHHVGFYGKVRHLEKFDQQTIKMLIDGRDVRNE
TPLHVAARHSKHDVIRWLLAKGADHELENDRGERPDEQRFGYCDGVTKKI
IRSFRSS
Run BLAST on NCBI

transcript from alignment at sc0003606:7687..8652-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042688 ID=TCONS_00042688|Name=TCONS_00042688|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at sc0003606:7687..8652- (Clytia hemisphaerica)
AAGAAATTCGCGAAATTCGAAGAAATTTTCCAACAAAATCCGAACATCGT
CTCGTTGCGTTATGGTCATGCTAATTATCTTGGTTATGAAGATCGGACAC
TTCTCATGTGGGCTGTTCTTGAAGACCGTTTCGACGTTTTCGTTCACTTG
ATGAATTATCCTCAAGATTTTTCACTCGTGGACACTGGAGGTTACAACAT
TCTTCATCATGTTGGTTTTTATGGAAAAGTTCGTCATTTGGAAAAGTTTG
ATCAACAAACAATCAAAATGTTGATCGATGGAAGAGACGTACGGAACGAA
ACACCATTGCATGTTGCAGCACGTCACAGCAAACATGACGTCATCAGATG
GTTGTTGGCCAAAGGAGCGGATCATGAATTGGAAAATGATCGTGGTGAAC
GCCCTGATGAACAACGGTTTGGTTATTGTGATGGTGTTACAAAAAAAATC
ATTCGATCGTTTCGTTCGTCTTGGTAAGAAAAATATCCACTTTTTCAAGG
ATAGGAACATTTTTTCGGTTGGAAATCTTTTTTTTTCTATTATAGTGCAA
AGTGTTAAAACTTTTTCTTAAAGTTTTTATTTAAAATAGATGTGAAATGT
TTTTTAGGTAGACTTTAAATTTTTCAGTTTGATAAATTTTACCTTTTCGG
AGTTTAAATGAATGAAACGGATAAATTAATTTCAATTTTTTGATTAAGAT
TTTTCATTGCATTGGAGCAGACATATTTTGGAGACATATTTTTGCAAATA
GATGGTTGTTTATGAAATTTTTTCTCTGGTTGTTATGAATTAATTTTTCA
GTGAAGAAAGATATTGTCGTTTTTTTCGATTTCATAGTACGTGTGTTCAT
GTATTTGTTTTCAATTGTTTCTCATTCGATGATTTATTTTTCAGATTGTT
TGATTGATTGTTTCCATTGTCTGTTTCATCGTTTCCAATGACGCCATCGG
TTCCAAACATTTCCAC

Coding sequence (CDS) from alignment at sc0003606:7687..8652-

>TCONS_00042688 ID=TCONS_00042688|Name=TCONS_00042688|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at sc0003606:7687..8652- (Clytia hemisphaerica)
AAAGAAATTCGCGAAATTCGAAGAAATTTTCCAACAAAATCCGAACATCG
TCTCGTTGCGTTATGGTCATGCTAATTATCTTGGTTATGAAGATCGGACA
CTTCTCATGTGGGCTGTTCTTGAAGACCGTTTCGACGTTTTCGTTCACTT
GATGAATTATCCTCAAGATTTTTCACTCGTGGACACTGGAGGTTACAACA
TTCTTCATCATGTTGGTTTTTATGGAAAAGTTCGTCATTTGGAAAAGTTT
GATCAACAAACAATCAAAATGTTGATCGATGGAAGAGACGTACGGAACGA
AACACCATTGCATGTTGCAGCACGTCACAGCAAACATGACGTCATCAGAT
GGTTGTTGGCCAAAGGAGCGGATCATGAATTGGAAAATGATCGTGGTGAA
CGCCCTGATGAACAACGGTTTGGTTATTGTGATGGTGTTACAAAAAAAAT
CATTCGATCGTTTCGTTCGTCTTGAAAGAAATTCGCGAAATTCGAAGAAA
TTTTCCAACAAAATCCGAACATCGTCTCGTTGCGTTATGGTCATGCTAAT
TATCTTGGTTATGAAGATCGGACACTTCTCATGTGGGCTGTTCTTGAAGA
CCGTTTCGACGTTTTCGTTCACTTGATGAATTATCCTCAAGATTTTTCAC
TCGTGGACACTGGAGGTTACAACATTCTTCATCATGTTGGTTTTTATGGA
AAAGTTCGTCATTTGGAAAAGTTTGATCAACAAACAATCAAAATGTTGAT
CGATGGAAGAGACGTACGGAACGAAACACCATTGCATGTTGCAGCACGTC
ACAGCAAACATGACGTCATCAGATGGTTGTTGGCCAAAGGAGCGGATCAT
GAATTGGAAAATGATCGTGGTGAACGCCCTGATGAACAACGGTTTGGTTA
TTGTGATGGTGTTACAAAAAAAATCATTCGATCGTTTCGTTCGTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026501XLOC_026501Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042688-proteinTCONS_00042688-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042688-exon-sc0003606-1575043694:8180..8652TCONS_00042688-exon-sc0003606-1575043694:8180..8652Clytia hemisphaericaexon
TCONS_00042688-exon-sc0003606-1575043694:7687..7758TCONS_00042688-exon-sc0003606-1575043694:7687..7758Clytia hemisphaericaexon
TCONS_00042688-exon-sc0003606-1510915933:8180..8652TCONS_00042688-exon-sc0003606-1510915933:8180..8652Clytia hemisphaericaexon
TCONS_00042688-exon-sc0003606-1510915933:7687..7758TCONS_00042688-exon-sc0003606-1510915933:7687..7758Clytia hemisphaericaexon
TCONS_00042688-exon-sc0003606-1491911889:8180..8652TCONS_00042688-exon-sc0003606-1491911889:8180..8652Clytia hemisphaericaexon
TCONS_00042688-exon-sc0003606-1491911889:7687..7758TCONS_00042688-exon-sc0003606-1491911889:7687..7758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003606supercontigsc0003606:7687..8652 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126089	0.346442	0	0.121797	0	0.231043	0.139536	0.133557	0.395881	0.129359	0.361451	0	1.74125	2.81824	2.48988	3.03155	0.968391	1.03618	1.10646	1.79305	0.352738	0.176877	0.822624	1.01696	0.1157	0.12948	2.9501	1.92579	5.19527	4.70261
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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