TCONS_00042687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042687
Unique NameTCONS_00042687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042687 ID=TCONS_00042687|Name=TCONS_00042687|organism=Clytia hemisphaerica|type=transcript|length=764bp
ATTGATGGTAGATCTGATGTACTCATCTTTGTTTCTGTGTAGAATGAGAG
GGAGAAGGGGTGCTCGAGGTCCTTGATTTCGGTTGCCACCATAGAGCAAA
GTGTGACGGGGTATTGCCAGGGCCTTTGCAATGTTGCGGTTAATGAGGGA
TAGTGGTATCCACGAGCCAGAATAACTTTGGTAAGGAAATTCAGTTCTTT
TGTTAGATTACGGTCATCACTGATTATGAGGTTGTATCGTAGTCCTTGTG
AGTATATAATTCCTTCTTTGACATGTAGGGGGTGATTTGATTGAAGTGAA
GGAATTGGGAGCAGTCAGTGGGTTTTCTGTATATAGAAGTGTGGAACTGA
TGGTTAGAGATAGAAATTGAGAGGTCTAGGAAGTTGATTCTTTCTTTGTA
ATGTTCAAATGTGAATTTTATTGTGTCATGGATTATGTTCATGAATTGTT
TGAGACGGTTTAAGTCTTCATCTGAcccaatgaaaagaaaaaatacatcA
TCAATAAAACGTTTCCAGAGTGGGATGTATTGTTGGAGCTCCATGAGTAT
TGCTGCTTCAACATCAGCCATGAATAAATTTGCATATTGGGGTGCGCATC
GTCCTCCCATGCTGGTGCCATTGTTTTGTATATAGTGGGAATTCAAAAAC
CGGAAATTGCTGTGTTTCAAGACGTGTTCGAGTAGTACTTTGATGGCAAA
AGGACCTCCCATTTGAGTGAAGCAGGTGCGGAGATTGTTTGTAATGTCGG
GAGGTGGCTTCCAG
Run BLAST on NCBI

protein sequence of TCONS_00042687-protein

>TCONS_00042687-protein ID=TCONS_00042687-protein|Name=TCONS_00042687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
WKPPPDITNNLRTCFTQMGGPFAIKVLLEHVLKHSNFRFLNSHYIQNNGT
SMGGRCAPQYANLFMADVEAAILMELQQYIPLWKRFIDDVFFLFIGSDED
LNRLKQFMNIIHDTIKFTFEHYKERINFLDLSISISNHQFHTSIYRKPTD
CSQFLHFNQITPYMSKKELYTHKDYDTTS
Run BLAST on NCBI

transcript from alignment at sc0003605:9133..9896

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042687 ID=TCONS_00042687|Name=TCONS_00042687|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at sc0003605:9133..9896 (Clytia hemisphaerica)
CTGGAAGCCACCTCCCGACATTACAAACAATCTCCGCACCTGCTTCACTC
AAATGGGAGGTCCTTTTGCCATCAAAGTACTACTCGAACACGTCTTGAAA
CACAGCAATTTCCGGTTTTTGAATTCCCACTATATACAAAACAATGGCAC
CAGCATGGGAGGACGATGCGCACCCCAATATGCAAATTTATTCATGGCTG
ATGTTGAAGCAGCAATACTCATGGAGCTCCAACAATACATCCCACTCTGG
AAACGTTTTATTGATgatgtattttttcttttcattgggTCAGATGAAGA
CTTAAACCGTCTCAAACAATTCATGAACATAATCCATGACACAATAAAAT
TCACATTTGAACATTACAAAGAAAGAATCAACTTCCTAGACCTCTCAATT
TCTATCTCTAACCATCAGTTCCACACTTCTATATACAGAAAACCCACTGA
CTGCTCCCAATTCCTTCACTTCAATCAAATCACCCCCTACATGTCAAAGA
AGGAATTATATACTCACAAGGACTACGATACAACCTCATAATCAGTGATG
ACCGTAATCTAACAAAAGAACTGAATTTCCTTACCAAAGTTATTCTGGCT
CGTGGATACCACTATCCCTCATTAACCGCAACATTGCAAAGGCCCTGGCA
ATACCCCGTCACACTTTGCTCTATGGTGGCAACCGAAATCAAGGACCTCG
AGCACCCCTTCTCCCTCTCATTCTACACAGAAACAAAGATGAGTACATCA
GATCTACCATCAAT

Coding sequence (CDS) from alignment at sc0003605:9133..9896

>TCONS_00042687 ID=TCONS_00042687|Name=TCONS_00042687|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0003605:9133..9896 (Clytia hemisphaerica)
TGGAAGCCACCTCCCGACATTACAAACAATCTCCGCACCTGCTTCACTCA
AATGGGAGGTCCTTTTGCCATCAAAGTACTACTCGAACACGTCTTGAAAC
ACAGCAATTTCCGGTTTTTGAATTCCCACTATATACAAAACAATGGCACC
AGCATGGGAGGACGATGCGCACCCCAATATGCAAATTTATTCATGGCTGA
TGTTGAAGCAGCAATACTCATGGAGCTCCAACAATACATCCCACTCTGGA
AACGTTTTATTGATgatgtattttttcttttcattgggTCAGATGAAGAC
TTAAACCGTCTCAAACAATTCATGAACATAATCCATGACACAATAAAATT
CACATTTGAACATTACAAAGAAAGAATCAACTTCCTAGACCTCTCAATTT
CTATCTCTAACCATCAGTTCCACACTTCTATATACAGAAAACCCACTGAC
TGCTCCCAATTCCTTCACTTCAATCAAATCACCCCCTACATGTCAAAGAA
GGAATTATATACTCACAAGGACTACGATACAACCTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026500XLOC_026500Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042687-proteinTCONS_00042687-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042687-exon-sc0003605-1491911889:9133..9896TCONS_00042687-exon-sc0003605-1491911889:9133..9896Clytia hemisphaericaexon
TCONS_00042687-exon-sc0003605-1510915933:9133..9896TCONS_00042687-exon-sc0003605-1510915933:9133..9896Clytia hemisphaericaexon
TCONS_00042687-exon-sc0003605-1575043694:9133..9896TCONS_00042687-exon-sc0003605-1575043694:9133..9896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003605supercontigsc0003605:9133..9896 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0959192	0.131532	0.153797	0.139385	0	0	0.447319	0	0	0	0.463817	0	0	0	0	0	0	0	7.69584e-05	0	0	0.198587	0	0	0	0.280644	0	0	0	0.138446
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top