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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042685 ID=TCONS_00042685|Name=TCONS_00042685|organism=Clytia hemisphaerica|type=transcript|length=1167bp
gccaaattgaATTTTCTTCCGGGTTGAATTTGGACTTTGGGATTTTGGGA
TACCTcaatctttttctaatttttttcctttaatgCATTCGTTTCAGAGT
GATTGGACACATGAGTACGTCGTCTTCACCGAGGAAATCTGGTCCGGCGc
tagaaaaaaaacgaaaagaagACAAAGATATTTCTAATTGTAAAATGATC
CAtggcttttatattttttagccAGATAAACTTTTattcttttagttttt
ttacCTTACTTACACTTTCGATAAATTACAATTAGGTAACACTACCATCA
ATTTTTACTTCACAGCTTGACGATAATTTTTGTCTGTCACGGACGGTTCA
TTGGGCCCTTCGTCTTTAAGTCAAGcgatattctgaaaaaaaatgaaagc
gTTGTTATACATTAAATTCCAAGTCAAATGTTCAAAATTTAACCGTGATT
GTTGTTCTAACTTAAACCCGAAAATGTTCTACTTTATATTCGACAATCAA
TAAACGGGGAACGGGCACAAACACTTAATGAGGCATTGAAGCACAGAAAT
TTACCCTTTAATGGATTTGCaagaatttggtttgtgggTTGTGTTTGGTT
TGtggttaaaaaaatattctaatcATTATGCATTAAGATAAGTGagctta
tattttttattgttggGATTTAGAGAAAATAGATGTTCTTCTTTGCTTTC
CCCGTgtttttactttaattttccACCGTATCCCTATCCGCTTTTAGCCA
CACCTCTCAGTTCGTACCGAATAACTTATCCTTTTGTGAAGTGAAATTCT
CAGTCATTCAGAAATAATTTCATTGAAAACCGTCTTATGGGAATTCTTAT
TGCTGACGCGATTCCTTTAGTTTGGTTTTAACGACCGTTGATTAATTACG
GTTATTTTCACAGTTTCTTGTTTCTACGTCATTTGTTAAACCTCTTAGTA
GGAGAACAGgtctttttataaggaattttataacacttcgtggcagatta
aaaagacgattagaaaacgaaagcttcttcgtttttcattttcgcattta
tggggaagaatgaaattttcagaagatgctttattcgATATGAGGATTCC
CAATTGCGTAAAATCGCGATTCCCCATAGTTGCGAAATGgtggctatggg
taattcctttgttcttt Run BLAST on NCBI transcript from alignment at sc0003605:1563..3164+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042685 ID=TCONS_00042685|Name=TCONS_00042685|organism=Clytia hemisphaerica|type=transcript|length=1602bp|location=Sequence derived from alignment at sc0003605:1563..3164+ (Clytia hemisphaerica)
gccaaattgaATTTTCTTCCGGGTTGAATTTGGACTTTGGGATTTTGGGA
TACCTcaatctttttctaatttttttcctttaatgCATTCGTTTCAGAGT
GATTGGACACATGAGTACGTCGTCTTCACCGAGGGTAAGAGTCATATCTT
CTTATTCAAATTCAATTAGTTTCGTGATGGACAGGAAATTACATGAATAC
GAGATCCGGACGAAATTCCACCATACTTTGAGACTGTCAAAGTTGCTGCC
ATCAAAACGAGAAATCGGTTTAATCCCCATTCAATTTTATACCCCACCCT
GTGGCCTATTCGCTATACGTCATAGTTTTTATCTACGCTATATGTACTTT
TGAGCACCCTGTCTCACATCCCCCGGTGGAAGTGGGGATTCGGGacaaat
ttctatcgaaatcccaatggggatataaatctattgaatttcaaatgaag
attaaatcaaagttaattttccATGGAAtgaaatttggctaaattttcca
gtgtggCTGTACTGTGATGAGCACGGGTAGCTTTTAGAGGGACTCTATAT
TGTATTTATCTCTATCTAGAAATCTGGTCCGGCGctagaaaaaaaacgaa
aagaagACAAAGATATTTCTAATTGTAAAATGATCCAtggcttttatatt
ttttagccAGATAAACTTTTattcttttagtttttttacCTTACTTACAC
TTTCGATAAATTACAATTAGGTAACACTACCATCAATTTTTACTTCACAG
CTTGACGATAATTTTTGTCTGTCACGGACGGTTCATTGGGCCCTTCGTCT
TTAAGTCAAGcgatattctgaaaaaaaatgaaagcgTTGTTATACATTAA
ATTCCAAGTCAAATGTTCAAAATTTAACCGTGATTGTTGTTCTAACTTAA
ACCCGAAAATGTTCTACTTTATATTCGACAATCAATAAACGGGGAACGGG
CACAAACACTTAATGAGGCATTGAAGCACAGAAATTTACCCTTTAATGGA
TTTGCaagaatttggtttgtgggTTGTGTTTGGTTTGtggttaaaaaaat
attctaatcATTATGCATTAAGATAAGTGagcttatattttttattgttg
gGATTTAGAGAAAATAGATGTTCTTCTTTGCTTTCCCCGTgtttttactt
taattttccACCGTATCCCTATCCGCTTTTAGCCACACCTCTCAGTTCGT
ACCGAATAACTTATCCTTTTGTGAAGTGAAATTCTCAGTCATTCAGAAAT
AATTTCATTGAAAACCGTCTTATGGGAATTCTTATTGCTGACGCGATTCC
TTTAGTTTGGTTTTAACGACCGTTGATTAATTACGGTTATTTTCACAGTT
TCTTGTTTCTACGTCATTTGTTAAACCTCTTAGTAGGAGAACAGgtcttt
ttataaggaattttataacacttcgtggcagattaaaaagacgattagaa
aacgaaagcttcttcgtttttcattttcgcatttatggggaagaatgaaa
ttttcagaagatgctttattcgATATGAGGATTCCCAATTGCGTAAAATC
GCGATTCCCCATAGTTGCGAAATGgtggctatgggtaattcctttgttct
tt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042685-exon-sc0003605-1491911889:1563..1696 | TCONS_00042685-exon-sc0003605-1491911889:1563..1696 | Clytia hemisphaerica | exon |
| TCONS_00042685-exon-sc0003605-1510915933:1563..1696 | TCONS_00042685-exon-sc0003605-1510915933:1563..1696 | Clytia hemisphaerica | exon |
| TCONS_00042685-exon-sc0003605-1575043694:1563..1696 | TCONS_00042685-exon-sc0003605-1575043694:1563..1696 | Clytia hemisphaerica | exon |
| TCONS_00042685-exon-sc0003605-1491911889:2132..3164 | TCONS_00042685-exon-sc0003605-1491911889:2132..3164 | Clytia hemisphaerica | exon |
| TCONS_00042685-exon-sc0003605-1510915933:2132..3164 | TCONS_00042685-exon-sc0003605-1510915933:2132..3164 | Clytia hemisphaerica | exon |
| TCONS_00042685-exon-sc0003605-1575043694:2132..3164 | TCONS_00042685-exon-sc0003605-1575043694:2132..3164 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003605 | supercontig | sc0003605:1563..3164 + |
Blast
The following BLAST results are available for this feature:
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