TCONS_00042684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042684
Unique NameTCONS_00042684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042684 ID=TCONS_00042684|Name=TCONS_00042684|organism=Clytia hemisphaerica|type=transcript|length=270bp
GGAAAGGTGGGAGAACGTGGTTGCAATTTGTCTGCTGGTCAGAAACAACT
GATGTGTCTTGCACGAGCTCTTCTCAAAAAGTCCAAGATCATTTGTATAG
ACGAGGCAACAGCTTCAGTTGACATGGAAACGGATCAACAGATAcaggaa
gcattacgtaatgaattCGTTGCAAGTACTGTGCTGACAATTGCACACAG
GTATTAATTCAATGGTTCTCAAAAATTGTTCAATGTCTTAGATTCTTACA
CCCTTGTGTCtaagacccgg
Run BLAST on NCBI

transcript from alignment at sc0003604:4740..5274+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042684 ID=TCONS_00042684|Name=TCONS_00042684|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at sc0003604:4740..5274+ (Clytia hemisphaerica)
GGAAAGGTGGGAGAACGTGGTTGCAATTTGTCTGCTGGTCAGAAACAACT
GATGTGTCTTGCACGAGCTCTTCTCAAAAAGTCCAAGGTATAAAATTTGT
TCATAGTGTGGAAAGTGGTGGGATCCCCCACTTTTTGGTCTCCCCAAtct
tcaaatttgtttatccCCAAGGGGTGATTAAACTAGTTTTTAGAAGCACT
GACCAAGATCTGACCATTATTGCTTCAGGCTAGAGCGTAAAAGGTTAGAA
TTTGCAGTATAAAGATAAAAAGTGCTAAAGTGAATGATTACTTTATTGAG
TAAATTACTTTGTAAGCTTGGCCTTCTATTCTACCGTCTCGCTTATTTCC
AGATCATTTGTATAGACGAGGCAACAGCTTCAGTTGACATGGAAACGGAT
CAACAGATAcaggaagcattacgtaatgaattCGTTGCAAGTACTGTGCT
GACAATTGCACACAGGTATTAATTCAATGGTTCTCAAAAATTGTTCAATG
TCTTAGATTCTTACACCCTTGTGTCtaagacccgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026497XLOC_026497Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042684-exon-sc0003604-1491911889:4740..4826TCONS_00042684-exon-sc0003604-1491911889:4740..4826Clytia hemisphaericaexon
TCONS_00042684-exon-sc0003604-1510915933:4740..4826TCONS_00042684-exon-sc0003604-1510915933:4740..4826Clytia hemisphaericaexon
TCONS_00042684-exon-sc0003604-1575043694:4740..4826TCONS_00042684-exon-sc0003604-1575043694:4740..4826Clytia hemisphaericaexon
TCONS_00042684-exon-sc0003604-1491911889:5092..5274TCONS_00042684-exon-sc0003604-1491911889:5092..5274Clytia hemisphaericaexon
TCONS_00042684-exon-sc0003604-1510915933:5092..5274TCONS_00042684-exon-sc0003604-1510915933:5092..5274Clytia hemisphaericaexon
TCONS_00042684-exon-sc0003604-1575043694:5092..5274TCONS_00042684-exon-sc0003604-1575043694:5092..5274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003604supercontigsc0003604:4740..5274 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.20288	4.34776	3.70027	2.14923	0.764262	1.20786	0	0.682122	2.34645	1.52376	1.1599	3.12564	5.40517	3.63819	8.20362	6.1765	5.96751	4.81766	5.18894	7.78193	4.56923	0.844308	0.319424	4.45715	0	0	0.765167	1.47903e-05	3.47948	9.13908
Blast
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BLAST of TCONS_00042684 vs. Swiss-Prot (Human)
Match: MRP2 (Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 5.930e-22
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    4 KVGERGCNLSAGQKQLMCLARALLKKSKIICIDEATASVDMETDQQIQEALRNEFVASTVLTIAHR 201
            +V E G NLS GQ+QL+CL RALL+KSKI+ +DEATA+VD+ETD  IQ  ++NEF   TV+TIAHR
Sbjct: 1429 EVTEAGGNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAHCTVITIAHR 1494
The following BLAST results are available for this feature:
BLAST of TCONS_00042684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRP25.930e-2263.64Canalicular multispecific organic anion transporte... [more]
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